| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4573244 | 26 (1.610) | 3 (0.190) | 3/244 | NT | 10.4% | intergenic (+8/‑129) | PP_4054/glgX | hypothetical protein/glycogen debranching enzyme |
| ? | NC_002947 | = 4573328 | 27 (1.750) | intergenic (+92/‑45) | PP_4054/glgX | hypothetical protein/glycogen debranching enzyme | |||||
GAAGCGCTGGCGCCCAAGGCAGCCCCGCGCAAGAAGGCAGCGGCCAAGCCGAAGGCGCCTGCCGAACCCAAGGCGGCTGCCCTGCCGGGGGTTAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4573090‑4573244‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgtccTGCATTGGCCACTTCGCGGGTAAACCCGCTCCTACATGCGCCTGTGATGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGGACAGGCTTAACCGGCAGTAGGCTTTTTCACCGCCCGGGGCTTTTTCACCGCAGTGGGTTTAAC < NC_002947/4573328‑4573180 GAAGCGCTGGCGCCCAAGGCAGCCCCGCGCAAGAAGGCAGCGGCCAAGCCGAAGGCGCCTGCCGAACCCAAGGCGGCTGCCCTGCCGGGGGTTAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCC > 1:252290/1‑150 AAGCGCTGGCGCCCAAGGCAGCCCCGCGCAAGAAGGCAGCGGCCAAGCCGAAGGCGCCTGCCGAACCCAAGGCGGCTGCCCTGCCGGGGGTTAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCT > 1:57354/1‑150 GCTGGCGCCCAAGGCAGCCCCGCGCAAGAAGGCAGCGGCCAAGCCGAAGGCGCCTGCCGAACCCAAGGCGGCTGCCCTGCCGGGGGTTAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCC > 2:45226/1‑150 CTGCCGAACCCAAGGCGGCTGCCCTGCCGGGGGTTAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCTGCATTGGCCACTTCGCGGGTAAACCCGCTCCTACATGCGCCTGTGATGAACC > 2:219402/1‑150 GAACCCAAGGCGGCTGCCCTGCCGGGGGTTAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCTGCATTGGCCACTTCGCGGGTAAACCCGCTCCTACATGCGCCTGTGATGAACCTTTAG < 1:219402/150‑1 CCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCTGCATTGGCCACTTCGCGGGTAAACCCGCTCCTACATGCGCCTGTGATGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGGACAGGC < 2:323405/150‑1 TGTCCTGCATTGGCCACTTCGCGGGTAAACCCGCTCCTACATGCGCCTGTAATGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGGACAGGCTTAACCGGCAGTCTATGTCTTCACCGCCCGGGGCTTTTTCACCGCAGTGGGTT > 1:357514/1‑150 TCCTGCATTGGCCACTTCGCGGGTAAACCCGCTCCTACATGCGCCTGTGATGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGGACAGGCTTAACCGGCAGTAGGCTTTTTCACCGCCCGGGGCTTTTTCACCGCAGTGGGTTTA > 1:393740/1‑150 TCCTGCATTGGCCACTTCGCGGGTAAACCCGCTCCTACATGCGCCTGTGATGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGGACAGGCTTAACCGGCAGTAGGCTTTTTCACCGCCCGGGGCTTTTTCACCGCAGTGGGTTTA > 2:379760/1‑150 CTGCATTGGCCACTTCGCGGGTAAACCCGCTCCTACATGCGCCTGTGATGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGGACAGGCTTAACCGGCAGTAGGCTTTTTCACCGCCCGGGGCTTTTTCACCGCAGTGGGTTTAAC > 2:266587/1‑150 CTGCATTGGCCACTTCGCGGGTAAACCCGCTCCTACATGCGCCTGTGATGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGGACAGGCTTAACCGGCAGTAGGCTTTTTCACCGCCCGG > 1:40372/1‑124 CTGCATTGGCCACTTCGCGGGTAAACCCGCTCCTACATGCGCCTGTGATGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGGACAGGCTTAACCGGCAGTAGGCTTTTTCACCGCCCGG < 2:40372/124‑1 GAAGCGCTGGCGCCCAAGGCAGCCCCGCGCAAGAAGGCAGCGGCCAAGCCGAAGGCGCCTGCCGAACCCAAGGCGGCTGCCCTGCCGGGGGTTAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4573090‑4573244‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgtccTGCATTGGCCACTTCGCGGGTAAACCCGCTCCTACATGCGCCTGTGATGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGGACAGGCTTAACCGGCAGTAGGCTTTTTCACCGCCCGGGGCTTTTTCACCGCAGTGGGTTTAAC < NC_002947/4573328‑4573180 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |