New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4573244	26 (1.610)	3 (0.190)	3/244	NT	10.4%	intergenic (+8/‑129)	PP_4054/glgX	hypothetical protein/glycogen debranching enzyme
	?	NC_002947	= 4573328	27 (1.750)					intergenic (+92/‑45)	PP_4054/glgX	hypothetical protein/glycogen debranching enzyme

GTTAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCACGGCCACTCGAGGATCGTCATGAGCCCCCGCACCCCAAAGAAAACCCGCTCGGTCGCACCATCGCGCATTCGCGAAGGCATGCCCTTCCCCCTCGGCGCCACCTGGGATGGCCTTGG  >  NC_002947/4573180‑4573470                                                                                                                                                     |                                                                                                                                               gTTAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGCGGGTTTACCCGCGAAGTGGCCAATGCAg                                                                                                                                               >  2:266587‑M2/1‑149 (MQ=255)   tAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGCGGGTTTACCCGCGAAGTGGCCAATGCAgga                                                                                                                                             >  2:379760‑M2/1‑147 (MQ=255)   tAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGCGGGTTTACCCGCGAAGTGGCCAATGCAgga                                                                                                                                             >  1:393740‑M2/1‑147 (MQ=255)     aaCCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAGACATAGACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATTACAGGCGCATGTAGGAGCGGGTTTACCCGCGAAGTGGCCAATGCAggaca                                                                                                                                           >  1:357514‑M2/1‑145 (MQ=255)            tGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTTCAGGTTCATCACAGGCGCATGTAGGAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAAt                                                                                                                                    >  2:363811/1‑150 (MQ=255)              cGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTc                                                                                                                                  <  1:53867/150‑1 (MQ=255)                gTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTccc                                                                                                                                <  2:267462/150‑1 (MQ=255)                           ccGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGCGGGTTTACCCGCGAAGTGGCCAATGCAg                                                                                                                                               <  2:40372‑M2/124‑2 (MQ=255)                           ccGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGCGGGTTTACCCGCGAAGTGGCCAATGCAg                                                                                                                                               >  1:40372‑M2/1‑123 (MQ=255)                                        aaGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCACGGCCACTCGAGGAt                                                                                                        >  2:5229/1‑150 (MQ=255)                                           ccTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCACGGCCACTCGa                                                                                                            >  1:315390/1‑143 (MQ=255)                                           ccTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCACGGCCACTCGa                                                                                                            <  2:315390/143‑1 (MQ=255)                                                tGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCACGGCCACTCGAGGATCGTCATGa                                                                                                <  2:115313/150‑1 (MQ=255)                                                     gTTAAGCCTGTCCGGGCCACTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCACGGCCACTCGAGGATCGTCATGAGcccc                                                                                           >  1:82115/1‑150 (MQ=255)                                                          gCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGCGGGTTTACCCGCGAAGTGGCCAATGCAggacaggcttaaccggcagtaggctttttcaccgcccggggctttttcaccgcagtgg                                                                                      <  2:323405‑M2/150‑59 (MQ=255)                                                                ccGTGCCACTTCGCGGGTACACCCGCTCCTACAAGTTCATCACAGGCGCGTGTAGGAGCGGGTTTACCCGCGAAGTGCCCAATGCAGGACAGCACAATTCCCCTTCCATCGCGGCCACTCTAGGATCGTCATGAGCCCCCGCACCCCaaa                                                                                <  1:411783/150‑1 (MQ=255)                                                                ccGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCACGGCCACTCGAGGATCGTCATGAGCCCCCGCACCCCaaa                                                                                <  2:401322/150‑1 (MQ=255)                                                                      ctctTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCACGGCCACTCGAGGATCGTCATGAGCCCCCGCACCCCAAAGAAAAc                                                                          <  2:57354/150‑1 (MQ=255)                                                                       tctTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACCATTCCCCTTCCATCACGGCCACTCGAGGATCGTCACTACCTCCCCCACACCACAGCAAAcc                                                                         >  2:56371/1‑150 (MQ=38)                                                                       tctTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCACGGCCACTCGAGGATCGTCATGAGCCCCCGCACCCCaaa                                                                                <  1:249842/143‑1 (MQ=255)                                                                       tctTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCACGGCCACTCGAGGATCGTCATGAGCCCCCGCACCCCaaa                                                                                >  2:249842/1‑143 (MQ=255)                                                                        ctTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCACGGCCCCTCGAGGATCGTCATGAGCCCCCGCACCCCAAAGAAAAccc                                                                        <  1:56371/150‑1 (MQ=255)                                                                                     cccGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCACGGCCACTCGAGGATCGTCATGAGCCCCCGCACCCCAAAGAAAACCCGCTCGGTCGCAcc                                                           >  1:150851/1‑150 (MQ=255)                                                                                          tCCTACAGGTTCATCACAGGCGCATGTAGGAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCACGGCCACTCGAGGATCGTCATGAGCCCCCGCACCCCaca                                                                                >  2:215266/1‑122 (MQ=255)                                                                                          tCCTACAGGTTCATCACAGGCGCATGTAGGAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCAACACGGCCACTCGAGGATCGTCATGAGCCCCCGCACCCCaaa                                                                                <  1:215266/124‑1 (MQ=255)                                                                                            cTAAAGGTTCATCACAGGCGCATGTAGGAGCGGGTTTACCCGCGAAGTGGCCAATGCAggacaggcttaaccggcagtaggctttttcaccgcccggggctttttcaccgcagtgggtttaacccccggcagggcagccgccttgggttc                                                    <  1:219402‑M2/150‑93 (MQ=255)                                                                                                 ggTTCATCACAGGCGCATGTAGGAGCGGGTTTACCCGCGAAGTGGCCAATGCAggacaggcttaaccggcagtaggctttttcaccgcccggggctttttcaccgcagtgggtttaacccccggcagggcagccgccttgggttcggcag                                               >  2:219402‑M2/1‑53 (MQ=255)                                                                                                  gTTCATCACAGGCGCATGTAGGAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCACGGCCACTCGAGGATCGTCATGAGCCCCCGCACCCCAAAGAAAACCCGCTCGGTCGCACCATCGCGCATTcgc                                              >  1:224424/1‑150 (MQ=255)                                                                                                      atcaCAGGCGCATGTAGGAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCACGGCCACTCGAGGATCGTCATGAGCCCCCGCACCCCAAAGAAAACCCGCTCGGTCGCACCATCGCGCATTCGCGAAg                                          >  1:79797/1‑150 (MQ=255)                                                                                                      atcaCAGGCGCATGTAGGAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCACGGCCACTCGAGGATCGTCATGAGCCCCCGCACCCCAAAGAAAACCCGCTCGGTCGCACCATCGCGCATTCGCGAAg                                          <  1:421083/150‑1 (MQ=255)                                                                                                                  tgcaggaggCGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCAGCACAGCGACGGGAAGATCGTCCTGAGCCCCCGCACCCCAAAGAAACCCTGCTCGGGCGCACCATCGCGCATTCGCGAAGGCATGCCCTTcc                              <  1:365384/147‑1 (MQ=255)                                                                                                                  ggTAGGAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCACGGCCACTCGAGGATCGTCATGAGCCCCCGCACCCCAAANANAACCCGNTCGGTCGCACCANCGCGCATTCGCGAAGGCATGCCCTNcc                              <  1:280373/149‑1 (MQ=255)                                                                                                                        aGCGGGTTTACCCGCGAAGAGGCCCATGCAGGACAGCACAATTCCCCTTCCATCACGGCCACTCGAGGATCGTCATGAGCCCCCGCACCCCAAAGAAAACCCGCTCGGTCGCACCATCGCGCATTCGCGAAGGCATGCCCTTCCCCCTCg                        >  1:197370/1‑150 (MQ=255)                                                                                                                                   ccGCGAAGTGGCCAATGCAGGACAGCACAATTACCCTTCCATCACGTCCACTCGATGATCGTCATGAGCCCCCGCACCCCAAAGAAAACCCGCTCGGTCGCACCATCGCGCATTCGCGAAGGCATGCCCTTCCCCCTCGGCGCCACCTgg             <  1:363811/150‑1 (MQ=255)                                                                                                                                    cgcgAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCACGGCCACTCGAGGATCGTCATGAGCCCCCGCACCCCAAAGAAAACCCGCTCGGTCGCACCATCGCGCATTCGCGAAGGCATGCCCTTCCCCCTCGGCGCCACCTggg            >  1:6751/1‑150 (MQ=255)                                                                                                                                              ccAATGCAGGACAGCACAATTCCCCTTCCATCACGGCCACTCGAGGATCGTCATGAGCCCCCGCACCCCAAAGAAAACCCGCTCGGTCGCACCATCGCGCATTCGCGAAGGCATGCCCTTCCCCCTCGGCGCCACCTGGGATGGCCTTgg  <  2:224424/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                               GTTAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCACGGCCACTCGAGGATCGTCATGAGCCCCCGCACCCCAAAGAAAACCCGCTCGGTCGCACCATCGCGCATTCGCGAAGGCATGCCCTTCCCCCTCGGCGCCACCTGGGATGGCCTTGG  >  NC_002947/4573180‑4573470

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.