New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 4744213 = | 15 (0.930) | 3 (0.190) | 3/246 | NT | 18.5% | coding (658/813 nt) | PP_4198 | OmpA family protein |
? | NC_002947 | 4744257 = | 12 (0.770) | coding (614/813 nt) | PP_4198 | OmpA family protein |
TCTCAAGCTGTCGCGCGACCGGGCGCAGTCCGTGGCTGACATGCTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4744259‑4744213 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcttgAGATTCTCCTCGCCCGCGCCAGTACTGTCGGTATAGCCCTCAATACGCACTACCCGGCGCGGGTTGAGCTGCAGGAACTGCACCAGCTTGAGCACAGTCCGGC > NC_002947/4744257‑4744359 TCTCAAGCTGTCGCGCGACCGGGCGCAGTCCGTGGCTGACATGCTTGAGATTCTCCTCGCCCGCGCCAGTACTGTCGGTATAGCCCTCAATACGCACTACCCGGCGCGGGTTGAGCTGCAGGAACTGCACCAGCTTGAGCACAGTCCGGC > 2:2773/1‑150 CTCAAGCTGTCGCGCGACCGGGCGCAGTCCGTGGCTGACATGCTTGAGATTCTCCTCGCCCGCGCCAGTACTGTCGGTATAGCCCTCAATACGCACTACCCGGCGCGGGTTGAGCTGCAGGAACTGCACCAGCTTGAG > 1:73008/1‑138 CTCAAGCTGTCGCGCGACCGGGCGCAGTCCGTGGCTGACATGCTTGAGATTCTCCTCGCCCGCGCCAGTACTGTCGGTATAGCCCTCAATACGCACTACCCGGCGCGGGTTGAGCTGCAGGAACTGCACCAGCTTGAG < 2:73008/138‑1 TCTCAAGCTGTCGCGCGACCGGGCGCAGTCCGTGGCTGACATGCTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4744259‑4744213 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcttgAGATTCTCCTCGCCCGCGCCAGTACTGTCGGTATAGCCCTCAATACGCACTACCCGGCGCGGGTTGAGCTGCAGGAACTGCACCAGCTTGAGCACAGTCCGGC > NC_002947/4744257‑4744359 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |