New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4744213 =	15 (0.930)	3 (0.190)	3/246	NT	18.5%	coding (658/813 nt)	PP_4198	OmpA family protein
	?	NC_002947	4744257 =	12 (0.770)					coding (614/813 nt)	PP_4198	OmpA family protein

CGACGGTTCTGCGCCCTGCCCCGCTCCGAAGCATTGGCCTCGATCGGGTACTGGTCGCCATAGCCTTCAACCTGCAGGCGCTTTTCGTCGATGCCCAGGTCCACAAGCATGTCAGCCACGGACTGCGCCCGGTCGCGCGACAGCTTGAGATTCTCCTCGCCCGCGCCAGTACTGTCGGTATAGCCCTCAATACGCACTACCCGGCGCGGGTTGAGCTGCAGGAACTGCACCAGCTTGAGCACAGTCCGGCTGGCCGAGTTCTTCAGGTCGGCACTGC  >  NC_002947/4744110‑4744386                                                                                                                                                    |                                                                                                                                  gccggactgtgctcaagctggtgcagttcctgcagctcaacccgcgccgggtagtgcgtattgagggctataccgacagtactggcgcgggcgaggagaatctCAAGCATGTCAGCCACGGACTGCGCCCGGTCGCGCGACAGCTTgaga                                                                                                                                 >  2:2773‑M1/104‑150 (MQ=255)            ctcaagctggtgcagttcctgcagctcaacccgcgccgggtagtgcgtattgagggctataccgacagtactggcgcgggcgaggagaatctCAAGCATGTCAGCCACGGACTGCGCCCGGTCGCGCGACAGCTTgag                                                                                                                                  >  1:73008‑M1/93‑138 (MQ=255)            ctcaagctggtgcagttcctgcagctcaacccgcgccgggtagtgcgtattgagggctataccgacagtactggcgcgggcgaggagaatctCAAGCATGTCAGCCACGGACTGCGCCCGGTCGCGCGACAGCTTgag                                                                                                                                  <  2:73008‑M1/46‑1 (MQ=255)                    cccGCTCCGAAGCATTGGCCTCGATCGGGTACTGGTCGCCATAGCCTTCAACCTGCAGGCGCTTTTCGTCGATGCCCAGGTCCACAAGCATGTCAGCCACGGACTGCGCCCGGTCGCGCGACAGCTTGAGATTCTCCTCGCCCGCGCCAg                                                                                                              >  1:50926/1‑150 (MQ=255)                                  ttGGCCTCGATCGGGTACTGGTCGCCATAGCCTTCAACCTGCAGGCGCTTTTCGTCGATGCCCAGGTCCACAAGCATGTCAGCCACGGACTGCGCCCGGTCGCGCGACAGCTTGAGATTCTCCTCGCCCGCGCCAGTACTGTCGGGATAg                                                                                                <  1:2720/150‑1 (MQ=255)                                                      gTCGCCATAGCCTTCAACCTGCAGGCGCTTTTCGTCGATGCCCAGGTCCACAAGCATGTCAGCCACGGACTGCGCCCGGTCGCGCGACAGCTTGAGATTCTCCTCGCCCGCGCCAGTACTGTCGGTATAGCCCTCAATACGCACTACCCg                                                                            >  1:300357/1‑150 (MQ=255)                                                                  ttCAACCTGCAGGCGCTTTTCGTCGATGCCCAGGTCCACAAGCATGTCAAATAGGGACTGCGCCCGGTCGCGCGACAGCTTGAGATTCTCCTCGCCCGCGCCAGTACTGTCGGTATAGCCCTCAATACGCACTACCCGGCGCGGGTTGAg                                                                >  1:254928/1‑150 (MQ=255)                                                                       ccTGCAGGCGCTTTTCGTCGATGCCCAGGTCCACAAGCATGTCAGCCACGGACTGCGCCCGGTCGCGCGACAGCTTGAGATTCTCCTCGCCCGCGCCAGTACTGTCGGTATAGCCCTCAATACGCACTACCCGGCGCGGGTTGAGCTGCa                                                           <  2:50926/150‑1 (MQ=255)                                                                        cTGCAGTCGCTTCAGCTCGATGCCCAGGTCAACAAGAATGTAAGCCACCGACTGCGACCGGCCGCGCGACAACTTGAGATTCTCCTCGCCCGCTCCAGTACTGTCGGTATAGCCCTCAATACGCACTACCCGGCGCGGGTTGAGCTGCAg                                                          <  1:425259/150‑1 (MQ=255)                                                                        cTGCAGGCGCTTTTCGTCGATGCCCAGGTCCACAAGCATGTCAGCCACGGACATCGCCCGGTCGCGCGACAGCTTGAGATTCTCCTCGCCCGCGCCAGTACTGTCGGTATAGCCCTCAATACGCACTACCCGGCGCGGGTTGAGCTGCAg                                                          >  1:11330/1‑150 (MQ=255)                                                                                              cccAGGTCCACAAGCATGTCAGCCACGGACTGCGCCCGGTCGCGCGACAGCTTGAGATTCTCCTCGCCCGCGCCAGTACTGTCGGTATAGCCCTCAATACGCACTACCCGGCGCGGGTTGAGCTGCAGGAACTGCACCAGCTTGAGcaca                                    <  2:300357/150‑1 (MQ=255)                                                                                                  ggTCCACAAGCATGTCCGCTACTGTCTGCGCCCGGTCGCGCGACAGCTTGAGATTCTCCTCGCCCGCGCCAGTACTGTCGGTATAGCCCTCAATACGCACTACCCGGCGCGGGTTGAGCTGCAGGAACTGCACCAGCTTGAGCACAGTcc                                <  1:135871/150‑1 (MQ=255)                                                                                                     tctcaagctgtcgcgcgaccgggcgcagtccgtggctgacatgcttgAGATTCTCCTCGCCCGCGCCAGTACTGTCGGTATAGCCCTCAATACGCACTACCCGGCGCGGGTTGAGCTGCAGGAACTGCACCAGCTTGAGCACAGTCCGGc                             >  2:2773‑M2/48‑150 (MQ=255)                                                                                                      ctcaagctgtcgcgcgaccgggcgcagtccgtggctgacatgcttgAGATTCTCCTCGCCCGCGCCAGTACTGTCGGTATAGCCCTCAATACGCACTACCCGGCGCGGGTTGAGCTGCAGGAACTGCACCAGCTTGAg                                        <  2:73008‑M2/92‑1 (MQ=255)                                                                                                      ctcaagctgtcgcgcgaccgggcgcagtccgtggctgacatgcttgAGATTCTCCTCGCCCGCGCCAGTACTGTCGGTATAGCCCTCAATACGCACTACCCGGCGCGGGTTGAGCTGCAGGAACTGCACCAGCTTGAg                                        >  1:73008‑M2/47‑138 (MQ=255)                                                                                                              tGTCAGCCACGGACTGCGCCCGGTCGCGCGACAGCTTGAGATTCTCCTCGCCCGCGCCAGTACTGTCGGTATAGCCCTCAATACGCACTACCCGGCGCGGGTTGAGCTGCAGGAACTGCCCCAGCTTTAGCACAGTCCGGCTGGCCGAGt                    >  2:214941/1‑150 (MQ=255)                                                                                                                      aCGGACTGCGCCCGGTCGCGCGACAGCTTGAGATTCTCCTCGCCCGCGCCAGTACTGTCGGTATAGCCCTCAATACGCACTACCCGGCGCGGGTTGAGCTGCAGGAACTGCACCAGCTTGAGCACAGTCCGGCTGGCCGAGTTCTTCCgg            >  2:427479/1‑150 (MQ=255)                                                                                                                                cccGGTCGCGCGACAGCTTGAGATTCTCCTCGCCCGCGCCAGTACTGTCGGTATAGCCCTCAATACGCACTACCCGGCGCGGGTTGAGCTGCAGGAACTGCACCAGCTTGAGCACAGTCCGGCTGGCCGAGTTCTTCAGGTCGGCACTGc  >  1:396771/1‑150 (MQ=255)                                                                                                                                                    |                                                                                                                                  CGACGGTTCTGCGCCCTGCCCCGCTCCGAAGCATTGGCCTCGATCGGGTACTGGTCGCCATAGCCTTCAACCTGCAGGCGCTTTTCGTCGATGCCCAGGTCCACAAGCATGTCAGCCACGGACTGCGCCCGGTCGCGCGACAGCTTGAGATTCTCCTCGCCCGCGCCAGTACTGTCGGTATAGCCCTCAATACGCACTACCCGGCGCGGGTTGAGCTGCAGGAACTGCACCAGCTTGAGCACAGTCCGGCTGGCCGAGTTCTTCAGGTCGGCACTGC  >  NC_002947/4744110‑4744386

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.