New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4744213 =	15 (0.930)	3 (0.190)	3/246	NT	18.5%	coding (658/813 nt)	PP_4198	OmpA family protein
	?	NC_002947	4744257 =	12 (0.770)					coding (614/813 nt)	PP_4198	OmpA family protein

CCGCCCCTTGTCATCGGAGAATACGATCTCCACCCGACGGTTCTGCGCCCTGCCCCGCTCCGAAGCATTGGCCTCGATCGGGTACTGGTCGCCATAGCCTTCAACCTGCAGGCGCTTTTCGTCGATGCCCAGGTCCACAAGCATGTCAGCCACGGACTGCGCCCGGTCGCGCGACAGCTTGAGATTCTCCTCGCCCGCGCCAGTACTGTCGGTATAGCCCTCAATACGCACTACCCGGCGCGGGTTGAGCTGCAGGAACTGCACCAGCTTGAGCACAGTCC  >  NC_002947/4744076‑4744356                                                                                                                                          |                                                                                                                                                ccgccCCTTGTCATCGGAGAATACGATCTCCACCCGACGGTTCTGCGCCCTGCCCCGCTCCGAAGCATTGGCCTCGATCGGGTACTGGTCGCCATAGCCTTCAACCTGCAGGCGCTTTTCGTCGATGCCCAGGTCCACAAGCATGTCAGc                                                                                                                                     <  2:53442/150‑1 (MQ=255)         tGTCATCGGAGAATACGATACACACACGACGGTTCTGCGCCCTGCCCCGCTCCGAAGCATTGGCCTCGATCGGGTACTGGTCGCCATAGCCTTCAACCTGCAGGCGCTTTTCGTCGATGCCCAGGTCCACAAGCATGTCAGCCACGGACt                                                                                                                             <  2:208141/150‑1 (MQ=255)                                   gccggactgtgctcaagctggtgcagttcctgcagctcaacccgcgccgggtagtgcgtattgagggctataccgacagtactggcgcgggcgaggagaatctCAAGCATGTCAGCCACGGACTGCGCCCGGTCGCGCGACAGCTTgaga                                                                                                   >  2:2773‑M1/104‑150 (MQ=255)                                   cGACGGTTCTGCGCCCTGCCCCGCTCCGAAGCATTGGCCTCGATCGGGTACTGGTCGCCATAGCCTTCAACCTGCAGGCGCTTTTCGTCGATGCCCAGGTCCACAAGCATGTCAGCCACGGACTGCGCCCGGTCGCGCGa                                                                                                             <  2:418894/140‑1 (MQ=255)                                   cGACGGTTCTGCGCCCTGCCCCGCTCCGAAGCATTGGCCTCGATCGGGTACTGGTCGCCATAGCCTTCAACCTGCAGGCGCTTTTCGTCGATGCCCAGGTCCACAAGCATGTCAGCCACGGACTGCGCCCGGTCGCGCGa                                                                                                             >  1:418894/1‑140 (MQ=255)                                              ctcaagctggtgcagttcctgcagctcaacccgcgccgggtagtgcgtattgagggctataccgacagtactggcgcgggcgaggagaatctCAAGCATGTCAGCCACGGACTGCGCCCGGTCGCGCGACAGCTTgag                                                                                                    >  1:73008‑M1/93‑138 (MQ=255)                                              ctcaagctggtgcagttcctgcagctcaacccgcgccgggtagtgcgtattgagggctataccgacagtactggcgcgggcgaggagaatctCAAGCATGTCAGCCACGGACTGCGCCCGGTCGCGCGACAGCTTgag                                                                                                    <  2:73008‑M1/46‑1 (MQ=255)                                                      cccGCTCCGAAGCATTGGCCTCGATCGGGTACTGGTCGCCATAGCCTTCAACCTGCAGGCGCTTTTCGTCGATGCCCAGGTCCACAAGCATGTCAGCCACGGACTGCGCCCGGTCGCGCGACAGCTTGAGATTCTCCTCGCCCGCGCCAg                                                                                >  1:50926/1‑150 (MQ=255)                                                             cGAAGCATTGGCCTCGATCGGGTACTGGTCGCCATAGCCTTCAACCTGCAGGCGCTTTTCGTCGATGCCCAGGTCCACAAGCATg                                                                                                                                          >  2:274317/1‑85 (MQ=255)                                                             cGAAGCATTGGCCTCGATCGGGTACTGGTCGCCATAGCCTTCAACCTGCAGGCGCTTTTCGTCGATGCCCAGGTCCACAAGCATg                                                                                                                                          <  1:274317/85‑1 (MQ=255)                                                                    ttGGCCTCGATCGGGTACTGGTCGCCATAGCCTTCAACCTGCAGGCGCTTTTCGTCGATGCCCAGGTCCACAAGCATGTCAGCCACGGACTGCGCCCGGTCGCGCGACAGCTTGAGATTCTCCTCGCCCGCGCCAGTACTGTCGGGATAg                                                                  <  1:2720/150‑1 (MQ=255)                                                                                        gTCGCCATAGCCTTCAACCTGCAGGCGCTTTTCGTCGATGCCCAGGTCCACAAGCATGTCAGCCACGGACTGCGCCCGGTCGCGCGACAGCTTGAGATTCTCCTCGCCCGCGCCAGTACTGTCGGTATAGCCCTCAATACGCACTACCCg                                              >  1:300357/1‑150 (MQ=255)                                                                                                    ttCAACCTGCAGGCGCTTTTCGTCGATGCCCAGGTCCACAAGCATGTCAAATAGGGACTGCGCCCGGTCGCGCGACAGCTTGAGATTCTCCTCGCCCGCGCCAGTACTGTCGGTATAGCCCTCAATACGCACTACCCGGCGCGGGTTGAg                                  >  1:254928/1‑150 (MQ=255)                                                                                                         ccTGCAGGCGCTTTTCGTCGATGCCCAGGTCCACAAGCATGTCAGCCACGGACTGCGCCCGGTCGCGCGACAGCTTGAGATTCTCCTCGCCCGCGCCAGTACTGTCGGTATAGCCCTCAATACGCACTACCCGGCGCGGGTTGAGCTGCa                             <  2:50926/150‑1 (MQ=255)                                                                                                          cTGCAGTCGCTTCAGCTCGATGCCCAGGTCAACAAGAATGTAAGCCACCGACTGCGACCGGCCGCGCGACAACTTGAGATTCTCCTCGCCCGCTCCAGTACTGTCGGTATAGCCCTCAATACGCACTACCCGGCGCGGGTTGAGCTGCAg                            <  1:425259/150‑1 (MQ=255)                                                                                                          cTGCAGGCGCTTTTCGTCGATGCCCAGGTCCACAAGCATGTCAGCCACGGACATCGCCCGGTCGCGCGACAGCTTGAGATTCTCCTCGCCCGCGCCAGTACTGTCGGTATAGCCCTCAATACGCACTACCCGGCGCGGGTTGAGCTGCAg                            >  1:11330/1‑150 (MQ=255)                                                                                                                                cccAGGTCCACAAGCATGTCAGCCACGGACTGCGCCCGGTCGCGCGACAGCTTGAGATTCTCCTCGCCCGCGCCAGTACTGTCGGTATAGCCCTCAATACGCACTACCCGGCGCGGGTTGAGCTGCAGGAACTGCACCAGCTTGAGcaca      <  2:300357/150‑1 (MQ=255)                                                                                                                                    ggTCCACAAGCATGTCCGCTACTGTCTGCGCCCGGTCGCGCGACAGCTTGAGATTCTCCTCGCCCGCGCCAGTACTGTCGGTATAGCCCTCAATACGCACTACCCGGCGCGGGTTGAGCTGCAGGAACTGCACCAGCTTGAGCACAGTcc  <  1:135871/150‑1 (MQ=255)                                                                                                                                          |                                                                                                                                                CCGCCCCTTGTCATCGGAGAATACGATCTCCACCCGACGGTTCTGCGCCCTGCCCCGCTCCGAAGCATTGGCCTCGATCGGGTACTGGTCGCCATAGCCTTCAACCTGCAGGCGCTTTTCGTCGATGCCCAGGTCCACAAGCATGTCAGCCACGGACTGCGCCCGGTCGCGCGACAGCTTGAGATTCTCCTCGCCCGCGCCAGTACTGTCGGTATAGCCCTCAATACGCACTACCCGGCGCGGGTTGAGCTGCAGGAACTGCACCAGCTTGAGCACAGTCC  >  NC_002947/4744076‑4744356

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.