New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5164637 =	13 (0.800)	4 (0.260)	4/244	NT	24.7%	coding (3291/3906 nt)	hrpA	ATP‑dependent helicase HrpA
	?	NC_002947	5164754 =	12 (0.780)					coding (3174/3906 nt)	hrpA	ATP‑dependent helicase HrpA

TCGACCCAGGCCGAAGCGGAGTTTCAGCACCGCCGCGCCTTGCAACGGCTGTTGCTGCAGCAACTGGCCGAGCCGGCCAAGTTCCTGCGCGGCAAGCTGCCGGGGCTGACCGAGCTGGGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5164759‑5164637 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcctgGGTCGAGAAACGCCCTTCACGCACAGTGCCGTTGTCTTCCACCAGTGCCGGGTACACGGTCATCGACAGGCCGGCGATCTTCTGCTGGGCGGTCTGTTTCACTTCGCTGAA  >  NC_002947/5164754‑5164864                                                                                                                                                                                                                                            TCGACCCAGGCCGAAGCGGAGTTTCAGCACCGCCGCGCCTTGCAACGGCTGTTGCTGCAGCAACTGGCCGAGCCGGCCAAGTTCCTGCGCGGCAAGCTGCCGGGGCTGACCGAGCTGGGCCTGGGTCGAGAAACGCCCTTCACGCACAGT                                                                                      >  1:89814/1‑150     CCCAGGCCGAAGCGGAGTTTCAGCACCGCCGCGCCTTGCAACGGCTGTTGCTGCAGCAACTGGCCGAGCCGGCCAAGTTCCTGCGCGGCAAGCTGCCGGGGCTGACCGAGCTGGGCCTGGGTCGAGAAACGCCCTTCACGCACAGTGCCG                                                                                  >  1:40378/1‑150                                                        TGCAGCAACTGGCCGAGCCGGCCAAGTTCCTGCGCGGCAAGCTGCCGGGGCTGACCGAGCTGGGCCTGGGTCGAGAAACGCCCTTCACGCACAGTGCCGTTGTCTTCCACCAGTGCCGGGTACACGGTCATCGACAGGCCGGCGATCTTC                               <  2:40378/150‑1                                                                                     CTGCGCGGCAAGCTGCCGGGGCTGACCGAGCTGGGCCTGGGTCGAGAAACGCCCTTCACGCACAGTGCCGTTGTCTTCCACCAGTGCCGGGTACACGGTCATCGACAGGCCGGCGATCTTCTGCTGGGCGGTCTGTTTCACTTCGCTGAA  <  2:89814/150‑1                                                                                                                                                                                                                                            TCGACCCAGGCCGAAGCGGAGTTTCAGCACCGCCGCGCCTTGCAACGGCTGTTGCTGCAGCAACTGGCCGAGCCGGCCAAGTTCCTGCGCGGCAAGCTGCCGGGGCTGACCGAGCTGGGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5164759‑5164637 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcctgGGTCGAGAAACGCCCTTCACGCACAGTGCCGTTGTCTTCCACCAGTGCCGGGTACACGGTCATCGACAGGCCGGCGATCTTCTGCTGGGCGGTCTGTTTCACTTCGCTGAA  >  NC_002947/5164754‑5164864

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.