New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5164637 = | 13 (0.800) | 4 (0.260) | 4/244 | NT | 24.7% | coding (3291/3906 nt) | hrpA | ATP‑dependent helicase HrpA |
? | NC_002947 | 5164754 = | 12 (0.780) | coding (3174/3906 nt) | hrpA | ATP‑dependent helicase HrpA |
GCGCTTCTACCCGCCCCATTTCACGGTACAGCAGGCCCAGCTCGGTCAGCCCCGGCAGCTTGCCGCGCAGGAACTTGGCCGGCTCGGCCAGTTGCTGCAGCAACAGCCGTTGCAAGGCGCGGCGGTGCTGAAACTCCGCTTCGGCCTGGGTCGAGAAACGCCCTTCACGCACAGTGCCGTTGTCTTCCACCAGTGCCGGGTACACGGTCATCGACAGGCCGGCGATCTTCTGCTGGGCGGTCTGTTTCACTTCGCTGAAGGCCTTGGCCTGCACCGGCTGCTCACC > NC_002947/5164606‑5164891 | cggcactgtgcgtgaagggcgtttctcgaccCAGGCCCAGCTCGGTCAGCCCCGGCAGCTTGCCGCGCAGGAACTTGGCCGGCTCGGCCAGTTGCTGCAGCAACAGCCGTTGCAAGGCGCGGCGGTGCTGAAACTCCGCTTCGGCCTggg > 1:40378‑M1/32‑150 (MQ=255) actgtgcgtgaagggcgtttctcgaccCAGGCCCAGCTCGGTCAGCCCCGGCAGCTTGCCGCGCAGGAACTTGGCCGGCTCGGCCAGTTGCTGCAGCAACAGCCGTTGCAAGGCGCGGCGGTGCTGAAACTCCGCTTCGGCCTGGGTCga > 1:89814‑M1/28‑150 (MQ=255) cATTTCACGGTACAGCAGGCCCAGCTCGGTCAGCCCCGGCAGCTTGCCGCGCAGGAACTTGGCCGGCTCGGCCAGTTGCTGCAGCAACAGCCGTTGCAAGGCGCGGCGGTGCTGAAACTCCGCTTCGGCCTGGGTCGAGAAACGCCCTTc > 1:210352/1‑150 (MQ=255) tcgacccaggccgaagcggagtttcagcaccgccgcgccttgcaacggctgttgctgcagcaactggccgagccggccaagttcctgcgcggcaagctgccggggctgaccgagctgggcctgGGTCGAGAAACGCCCTTCACGCACAGt > 1:89814‑M2/124‑150 (MQ=255) cccaggccgaagcggagtttcagcaccgccgcgccttgcaacggctgttgctgcagcaactggccgagccggccaagttcctgcgcggcaagctgccggggctgaccgagctgggcctgGGTCGAGAAACGCCCTTCACGCACAGTGCCg > 1:40378‑M2/120‑150 (MQ=255) agcagGCCCAGCTCGGTCAGCCCCGGCAGCTTGCCGCGCAGGAACTTGGCCGGCTCGGCCACTTGCGGCAGCAAAAGCCGTTGAAAGACGCGGCGGTGCTGAAACTCCGCTTCGGCCTGGGTCCAGACACGCCCCGCACGCACCGTGccc > 2:212891/1‑149 (MQ=255) gCTCGGTCAGCCCCGGCAGCTTGCCGCGCAGGAACTTGGCCGGCTCGGCCAGTTGCTGCAGCAACAGCCGTTGCAAGGCGCGGCGGTGCTGAAACTCCGCTTCGGCCTGGGTCGAGAAACGCCCTTCACGCACAGTGCCGTTGTCTTcca > 1:17691/1‑150 (MQ=255) ttGCCGCGCAGGAACTTGGCCGGCTCGGCCAGTTGCTGCAGCAACAGCCGTTGCAAGGCGCGGCGGTGCTGAAACTCCGCTTCGGCCTGGCTCGAGAAACGCCCTTCACGCACAGTGCCGTTGTCTTCCACCAGTGCCGGGTACACGGTc < 1:68552/150‑1 (MQ=255) gcAGGAACTTGGCCGGCTCGGCCAGTTGCTGCAGCAACAGCCGTTGCAAGGCGCGGCGGTGCTGAAACTCCGCTTCGGCCTGGGTCGAGAAACGCCCTTCACGCACAGTGCCGTTGTCTTCCACCAGTGCCGGGTACACGGTCATCGACa < 2:17691/150‑1 (MQ=255) tgcagcaactggccgagccggccaagttcctgcgcggcaagctgccggggctgaccgagctgggcctgGGTCGAGAAACGCCCTTCACGCACAGTGCCGTTGTCTTCCACCAGTGCCGGGTACACGGTCATCGACAGGCCGGCGAtcttc < 2:40378‑M2/82‑1 (MQ=255) tCGGCCAGTTGCTGCAGCAACAGCCGTTGCAAGGCGCGGCGGTGCTGAAACTCCGCTTCGGCCTGGGTCGAGAAACGCCCTTCACGCACAGTGCCGTTGTCTTCCACCAGTGCCGGGTACACGGTCATCGACAGGCCGGCGATCTTctgc < 1:220723/150‑1 (MQ=255) cagcaACAGCCGTTGCAAGGCGCGGCGGTGCTGAAACTCCGCTTCGGCCTGGGTCGAGAAACGCCCTTCACGCACAGTGCCGTTGTCTTCCACCAGTGCCGGGTACACGGTCATCGACAGGCCGGCGATCTTCTGCTGGGCGGTCTGttt > 1:382079/1‑150 (MQ=255) aCAGCCGTTGCAAGGCGCGGCGGTGCTGAAACTCCGCTTCGGCCTGGGTCGAGAAACGCCCTTCACGCACAGTGCCGTTGTCTTCCACCAGTGCCGGGTACACGGTCATCGACAGGCCGGCGATCTTCTGCTGGGCGGTCTGTTTCACtt > 1:5067/1‑150 (MQ=255) ctgcgcggcaagctgccggggctgaccgagctgggcctgGGTCGAGAAACGCCCTTCACGCACAGTGCCGTTGTCTTCCACCAGTGCCGGGTACACGGTCATCGACAGGCCGGCGATCTTCTGCTGGGCGGTCTGTTTCACTTCGCTGaa < 2:89814‑M2/111‑1 (MQ=255) gcggctGTGCTTAAACTCCGCTTCGTTCTGTGTCGAGAAACGCCCTTCACGCACAGTGCCATTTTCTTCCACTAGTGCTGCGTACCCGGTCATCGACAGGCCCGCGATCTTCTGCTGGGCGGTCTGTTTCACTTCGCTGAAGGCCTCggt < 2:210352/150‑2 (MQ=255) gTGCTGAAACTCCGCTTCGGCCTGGGTCGAGAAACGCCCTTCACGCACAGTGCCGTTGTCTTCCACCAGTGCCGGGTACACGGTCATCGACAGGCCGGCGATCTTCTGCTGGGCGGTCTGTTTCACTTCGCTGAAGGCCTTGGCCTGCAc > 2:439123/1‑150 (MQ=255) aCTCCGCTTCGGCCTGGGTCGAGAAACGCCCTTCACGCACAGTGCCGTTGTCTTCCACCAGTGCCGGGTACACGGTCATCGACAGGCCGGCGATCTTCTGCTGGGCGGTCTGTTTCACTTCGCTGAAGGCCTTGGCCTGCACCGgctgct > 1:254523/1‑150 (MQ=255) cGCTTCGGCCTGGGTCGAGAAACGCCCTTCACGCACAGTGCCGTTGTCTTCCACCAGTGCCGGGTACACGGTCATCGACAGGCCGGCGATCTTCTGCTGGGCGGTCTGTTTCACTTCGCTTAAGGCCTTGGCCTGCACCGGCTGCTCAcc > 1:182667/1‑150 (MQ=255) | GCGCTTCTACCCGCCCCATTTCACGGTACAGCAGGCCCAGCTCGGTCAGCCCCGGCAGCTTGCCGCGCAGGAACTTGGCCGGCTCGGCCAGTTGCTGCAGCAACAGCCGTTGCAAGGCGCGGCGGTGCTGAAACTCCGCTTCGGCCTGGGTCGAGAAACGCCCTTCACGCACAGTGCCGTTGTCTTCCACCAGTGCCGGGTACACGGTCATCGACAGGCCGGCGATCTTCTGCTGGGCGGTCTGTTTCACTTCGCTGAAGGCCTTGGCCTGCACCGGCTGCTCACC > NC_002947/5164606‑5164891 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |