New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5164637 = | 13 (0.800) | 4 (0.260) | 4/244 | NT | 24.7% | coding (3291/3906 nt) | hrpA | ATP‑dependent helicase HrpA |
? | NC_002947 | 5164754 = | 12 (0.780) | coding (3174/3906 nt) | hrpA | ATP‑dependent helicase HrpA |
CCCAGCTGCCGCGCTTGCGTTCAGCCAGCGCGGCCAAGGCCGCACCTTCACGTGGCAACGGTTGTTCGCCTTCAAGGATGCAACTGTCCAGGCTGGCCAGCAGAATGTCTTCGACCAGCGCTTCTACCCGCCCCATTTCACGGTACAGCAGGCCCAGCTCGGTCAGCCCCGGCAG‑CTTGCCGCGCAGGAACTTGGCCGGCTCGGCCAGTTGCTGCAGCAACAGCCGTTGCAAGGCGCGGCGGTGCTGAAACTCCGCTTCGGCCTGGGTCGAGAAACGCCCTTCACGCACAGTGCCG > NC_002947/5164489‑5164784 | cccAGCTGCCGCGCTTGCGTTCAGCCAGCGCGGCCAAGGCCGCACCTTCACGTGGCAACGGTTGTTCGCCTTCAAGGATGCAACTGTCCAGGCTGGCCAGCAGAATGTCTTCGACCAGCGCTTCTACCCGCCCCATTTCACGGTAcagca < 2:295799/150‑1 (MQ=255) agcGCGGCCAAGGCCGCACCTTCACGTGGCAACGGTTGTTCGCCTTCAAGGATGCAACTGTCCAGGCTGGCCAGCAGAATGTCTTCGACCAGCGCTTCTACCCGCCCCATTTCACGGTACAGCAGGCCCAGCTCGGTCAGCCCCGGCAG‑c > 2:270239/1‑150 (MQ=255) ccAAGGCCGCACCTTCACGTGGCAACGGTTGTTCGCCTTCAAGGATGCAACTGTCCAGGCTGGCCAGCAGAATGTCTTCGACCAGCGCTTCTACCCGCCCCATTTCACGGTACAGCAGGCCCAGCTCGGTCAGCCCCGGCAG‑CTTGCcgc > 2:68552/1‑150 (MQ=255) aGGCCGCACCTTCACGTGGCAACGGTTGTTCGCCTTCAAGGATGCAACTGTCCAGGCTGGCCAGCAGAATGTCTTCGACCAGCGCTTCTACCCGCCCCATTTCACGGTAAAGCAGGCCCAGCTCGGTCAGCCCCGGCAG‑CTTGCCGCGCa < 1:424906/150‑1 (MQ=255) ttcagcgaagtgaaacagaccgcccagcagaagatcgccggcctgtcgatgaccgtgtacccggcactggtggaagacaacggcactgtgcgtgaagggcgtttctcgaccCAGGCCCAGCTCGGTCAGCCCCGGCAG‑CTTGCCGCGCAg < 2:89814‑M1/39‑1 (MQ=255) gaagatcgccggcctgtcgatgaccgtgtacccggcactggtggaagacaacggcactgtgcgtgaagggcgtttctcgaccCAGGCCCAGCTCGGTCAGCCCCGGCAG‑CTTGCCGCGCAGGAACTTGGCCGGCTCGGCCAGTTGCTgca < 2:40378‑M1/68‑1 (MQ=255) cGCCTTCAAGGATGCAACTGTCCAGGCTGGCCAGCAGAATGTCTTCGACCAGCGCTTCTACCCGCCCCATTTCACGGTACAGCAGGGCTACCTCGTCCATCCCCGGCAG‑CTTGCCGCGCAGGAACTTGGCCGGCTCGGCCAGTTGCTgca < 2:373460/150‑1 (MQ=255) aaGGATGCAACTGTCCAGGCTGGCCAGCAGAATGTCTTCGACCAGCGCTTCTACCCGCCCCATTTCACGGTACAGCAGGCCCAGCTCGGTCAGCCCCGGCAG‑CTTGCCGCGCAGGAACTTGGCCGGCTCGGCCAGTTGCTGCAGCAACAg > 2:348726/1‑150 (MQ=255) gCCAGCAGAATGTCTTCGACCAGCGCTTCTACCCGCCCCATTTCACGGTACAGCAGGCCCAGCTCGGTCAGCCCCGGCAG‑CTTGCCGCGCAGGAACTTGGCCGGCTCGGCCAGTTGCTGCAGCAACAGCCGTTGCAAGGCGCGGCGGTGc < 2:205428/150‑1 (MQ=255) gcagAATGTCTTCGACCAGCGCTTCTACCCGCCCCATTTCACGGTACAGCAGGCCCAGCTCGGTCAGCCCCGGCAG‑CTTGCCGCGCAGGAACTTGGCCGGCTCGGCCAGTTGCTGCAGCAACAGCCGTTGCAAGGCGCGGCGGTGCTGaa < 1:270239/150‑1 (MQ=255) gcagAATGTCTTCGACCAGCGCTTCTACCCGCCCCATTTCACGGTACAGCAGGCCCAGCTCGGTCAGCCCCGGCAG‑CTTGCCGCGCAGGAACTTGGCCGGCTCGGCCAGTTCCCGCAGCAACAGCCGTTGCAAGGCGCGGCGGTGCTGaa > 1:23226/1‑150 (MQ=255) cagAATGTCTTCGACCAGCGCTTCTACCCGCCCCATTTCACGGTACAGCAGGCCCAGCTCGGTCAGCCCCGGCAG‑CTTGCCGCGCAGGAACTTGGCCGGCTCGGCCAGTTGCTGCAGCAACAGCCGTTGCAAGGCGCGGCGGTGCTGaaa < 1:348726/150‑1 (MQ=255) cAGCGCTTCTACCCGCCCCATTTCACGGTACAGCAGGCCCAGCTCGGCCCGAAAC‑ACAGCCACGGCGCGCAGGAACTTGGCCGGCTCGGCCAGTTGCTGCAGCAACAGCCGTTGCAAGGCGCGGCGGTGCTGAAACTCCGCTTCGGCCTg > 2:220723/1‑150 (MQ=255) cggcactgtgcgtgaagggcgtttctcgaccCAGGCCCAGCTCGGTCAGCCCCGGCAG‑CTTGCCGCGCAGGAACTTGGCCGGCTCGGCCAGTTGCTGCAGCAACAGCCGTTGCAAGGCGCGGCGGTGCTGAAACTCCGCTTCGGCCTggg > 1:40378‑M1/32‑150 (MQ=255) actgtgcgtgaagggcgtttctcgaccCAGGCCCAGCTCGGTCAGCCCCGGCAG‑CTTGCCGCGCAGGAACTTGGCCGGCTCGGCCAGTTGCTGCAGCAACAGCCGTTGCAAGGCGCGGCGGTGCTGAAACTCCGCTTCGGCCTGGGTCga > 1:89814‑M1/28‑150 (MQ=255) cATTTCACGGTACAGCAGGCCCAGCTCGGTCAGCCCCGGCAG‑CTTGCCGCGCAGGAACTTGGCCGGCTCGGCCAGTTGCTGCAGCAACAGCCGTTGCAAGGCGCGGCGGTGCTGAAACTCCGCTTCGGCCTGGGTCGAGAAACGCCCTTc > 1:210352/1‑150 (MQ=255) ttCACGGTACAGCAGGCCCAGCTCGGTCAGCCCCGGCAG‑CTTGCCGCGCAGGAACTTGGCCGGCTCGGCCAGTTGCTGCAGCAAc < 1:195370/85‑1 (MQ=255) ttCACGGTACAGCAGGCCCAGCTCGGTCAGCCCCGGCAG‑CTTGCCGCGCAGGAACTTGGCCGGCTCGGCCAGTTGCTGCAGCAAc > 2:195370/1‑85 (MQ=255) agcagGCCCAGCTCGGTCAGCCCCGGCAG‑CTTGCCGCGCAGGAACTTGGCCGGCTCGGCCACTTGCGGCAGCAAAAGCCGTTGAAAGACGCGGCGGTGCTGAAACTCCGCTTCGGCCTGGGTCCAGACACGCCCCGCACGCACCGTGccc > 2:212891/1‑149 (MQ=255) | CCCAGCTGCCGCGCTTGCGTTCAGCCAGCGCGGCCAAGGCCGCACCTTCACGTGGCAACGGTTGTTCGCCTTCAAGGATGCAACTGTCCAGGCTGGCCAGCAGAATGTCTTCGACCAGCGCTTCTACCCGCCCCATTTCACGGTACAGCAGGCCCAGCTCGGTCAGCCCCGGCAG‑CTTGCCGCGCAGGAACTTGGCCGGCTCGGCCAGTTGCTGCAGCAACAGCCGTTGCAAGGCGCGGCGGTGCTGAAACTCCGCTTCGGCCTGGGTCGAGAAACGCCCTTCACGCACAGTGCCG > NC_002947/5164489‑5164784 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |