New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5920482 = | 18 (1.110) | 4 (0.260) | 4/244 | NT | 19.9% | coding (1012/1674 nt) | PP_5190 | type II secretion system protein |
? | NC_002947 | 5920517 = | 15 (0.970) | coding (1047/1674 nt) | PP_5190 | type II secretion system protein |
CCAGCGCGGGCTGCACCTGCAACTGGTTGAAGGCTGGCTCCAGGCGCTCGATCGGGTCTTCGATGGTGCACAGGTTGACCTGTGGTGTGGCCAGCAGTTTGAGGCTGGTGTACAGCGTGCTGGTCTTGCCGGAGCCGGTGGGGCCGGTGACCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5920635‑5920482 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaccagCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGAAGACCCGATCGA > NC_002947/5920517‑5920588 CCAGCGCGGGCTGCACCTGCAACTGGTTGAAGGCTGGCTCCAGGCGCTCGATCGGGTCTTCGATGGTGCACAGGTTGACCTGTGGTGTGGCCAGCAGTTCGAGGCTGGTGTACAGCGTGCTGGTCTTGCCGGAGCCGGTGGGGCCGGTGA < 1:70492/150‑1 TGTACAGCGTGCTGGTCTTGCCGGAGCCGGTGGGGCCGGTGACCAGCACGCTGTACACCAGCCTCAAACTGCT > 1:136988/1‑73 TGTACAGCGTGCTGGTCTTGCCGGAGCCGGTGGGGCCGGTGACCAGCACGCTGTACACCAGCCTCAAACTGCT < 2:136988/73‑1 TGGTCTTGCCGGAGCCGGTGGGGCCGGTGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGAAGACCCGATCGA < 2:27934/106‑1 TGGTCTTGCCGGAGCCGGTGGGGCCGGTGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGAGCACCATCGAAGACCCGATCGA > 1:27934/1‑106 CAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTTGACCTGTGgt < 1:88149/56‑3 CAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTTGACCTGTGgt > 2:88149/1‑54 CCAGCGCGGGCTGCACCTGCAACTGGTTGAAGGCTGGCTCCAGGCGCTCGATCGGGTCTTCGATGGTGCACAGGTTGACCTGTGGTGTGGCCAGCAGTTTGAGGCTGGTGTACAGCGTGCTGGTCTTGCCGGAGCCGGTGGGGCCGGTGACCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5920635‑5920482 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaccagCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGAAGACCCGATCGA > NC_002947/5920517‑5920588 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |