New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5920482 =	18 (1.110)	4 (0.260)	4/244	NT	19.9%	coding (1012/1674 nt)	PP_5190	type II secretion system protein
	?	NC_002947	5920517 =	15 (0.970)					coding (1047/1674 nt)	PP_5190	type II secretion system protein

GCGCCTGTTCGACCCGCACCAGTTGCAAGAGGGCTTCGACCGCCTTGGCCTGCACGGCCAGCAACTGGCCCAATGGCAGCGCCTGCTTCGTCAGCGCCAAGGCATCATCCTGGTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGAAGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTGCAGCCCGCGCTGGACCTGGG  >  NC_002947/5920373‑5920642                                                                                                                                                 |                                                                                                                              gcgcCTGTTCGACCCGCACCAGTTGCAAGAGGGCTTCGACCGCCTTGGCCTGCACGGCCAGCAACTGGCCCAATGGCAGCGCCTGCTTCGTCAGCGCCAAGGCATCATCCTGGTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCt                                                                                                                          <  2:355168/150‑1 (MQ=255)              ccGCACCAGTTGCAAGAGGGCTTCGACCGCCTTGGCCTGCACGGCCAGCAACTGGCCCAATGGCAGCGCCTGCTTCGTCAGCGCCAAGGCATCATCCTGGTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTg                                                                                                                         <  1:177498/138‑1 (MQ=255)              ccGCACCAGTTGCAAGAGGGCTTCGACCGCCTTGGCCTGCACGGCCAGCAACTGGCCCAATGGCAGCGCCTGCTTCGTCAGCGCCAAGGCATCATCCTGGTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTg                                                                                                                         >  2:177498/1‑138 (MQ=255)                       ttGCAAGAGGGCTTCGACCGCCTTGGCCTGCACGGCCAGCAACTGGCCCAATGGCAGCGCCTGCTTCGTCAGCGCCAAGGCATCATCCTGGTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAActgctg                                                                                                    <  1:237429/150‑1 (MQ=255)                                                 ccTGCACGGCCAGCAACTGGCCCAATGGCAGCGCCTGCTTCGTCAGCGCCAAGGCATCATCCTGGTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGc                                                                                                                           >  2:42818/1‑101 (MQ=255)                                                 ccTGCACGGCCAGCAACTGGCCCAATGGCAGCGCCTGCTTCGTCAGCGCCAAGGCATCATCCTGGTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGc                                                                                                                           <  1:42818/101‑1 (MQ=255)                                                          ccAGCAACTGGCCCAATGGCAGCGCCTGCTTCGTCAGCGCCAAGGCATCATCCTGGTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGAAGa                                                                 >  1:249222/1‑150 (MQ=255)                                                           cAGCAACTGGCCCAATGGCAGCGCCTGCTTCGTCAGCGCCAAGGCATCATCCTGGTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGAAGAc                                                                >  2:281788/1‑150 (MQ=255)                                                                  tGGCCCAATGGCAGCGCCTGCTTCGTCAGCGCCAAGGCATCATCCTGGTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCCCAAACTGCTGGCCCACCCCCAGGTCAACCTGTGCACCATCGAAGACCCGATCg                                                         >  2:217097/1‑150 (MQ=255)                                                                                   agcagtttgaggctggtgtacagcgtgCTGGTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTaca                                                                                                                     >  1:136988‑M1/28‑73 (MQ=255)                                                                                   agcagtttgaggctggtgtacagcgtgCTGGTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTaca                                                                                                                     <  2:136988‑M1/46‑1 (MQ=255)                                                                                                gcCAAGGCATCATCCTGGTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGAAGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGc                           <  2:234369/150‑1 (MQ=255)                                                                                                   tgtacagcgtgctggtcttgccggagccggtggggccggtgaccagCACGCTGTACACCAGCCTCAAActgct                                                                                                     >  1:136988‑M2/47‑73 (MQ=255)                                                                                                   tgtacagcgtgctggtcttgccggagccggtggggccggtgaccagCACGCTGTACACCAGCCTCAAActgct                                                                                                     <  2:136988‑M2/27‑1 (MQ=255)                                                                                                    aGGCATCATCCTGGTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGAAGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGt                       >  1:75230/1‑150 (MQ=255)                                                                                                    aGGCATCATCCTGGTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGAAGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGt                       >  1:228915/1‑150 (MQ=255)                                                                                                     ggCATCATCCTGGTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGAAGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTg                      <  2:225838/150‑1 (MQ=255)                                                                                                         tcatcCTGGTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGAAGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTGCAGc                  <  1:281788/150‑1 (MQ=255)                                                                                                               tggtcttgccggagccggtggggccggtgaccagCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGAAGACCCGATCGa                                                        <  2:27934‑M2/72‑1 (MQ=255)                                                                                                               tggtcttgccggagccggtggggccggtgaccagCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGAGCACCATCGAAGACCCGATCGa                                                        >  1:27934‑M2/35‑106 (MQ=255)                                                                                                                  TCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCGAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGAAGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTGCAGCCCGCGCTgg         <  1:70492‑M1/150‑1 (MQ=255)                                                                                                                         ccccACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGAAGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTCCATCGCGGGCTTCACCTgtg  <  2:228915/150‑3 (MQ=255)                                                                                                                            cACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGAAGACCCGATCGAGCGcc                                                   >  1:408035/1‑98 (MQ=255)                                                                                                                            cACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGAAGACCCGATCGAGCGcc                                                   <  2:408035/98‑1 (MQ=255)                                                                                                                                              cagCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTTGAcctgtggt                                                                           <  1:88149‑M2/53‑3 (MQ=255)                                                                                                                                              cagCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTTGAcctgtggt                                                                           >  2:88149‑M2/4‑54 (MQ=255)                                                                                                                                                 |                                                                                                                              GCGCCTGTTCGACCCGCACCAGTTGCAAGAGGGCTTCGACCGCCTTGGCCTGCACGGCCAGCAACTGGCCCAATGGCAGCGCCTGCTTCGTCAGCGCCAAGGCATCATCCTGGTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGAAGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTGCAGCCCGCGCTGGACCTGGG  >  NC_002947/5920373‑5920642

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.