| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5920482 = | 18 (1.110) | 4 (0.260) | 4/244 | NT | 19.9% | coding (1012/1674 nt) | PP_5190 | type II secretion system protein |
| ? | NC_002947 | 5920517 = | 15 (0.970) | coding (1047/1674 nt) | PP_5190 | type II secretion system protein | |||||
TTCGACCCTGCCCACCCCATTTGGCGAGAAACTGGTGTTGCGCCTGTTCGACCCGCACCAGTTGCAAGAGGGCTTCGACCGCCTTGGCCTGCACGGCCAGCAACTGGCCCAATGGCAGCGCCTGCTTCGTCAGCGCCAAGGCATCATCCTGGTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGAAGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTGCAGC > NC_002947/5920334‑5920626 | ttCGACCCTGCCCACCCCATTTGGCGAGAAACTGGTGTTGCGCCTGTTCGACCCGCACCAGTTGCAAGAGGGCTTCGACCGCCTTGGCCTGCACGGCCAGCAACTGGCCCAATGGCAGCGCCTGCTTCGTCAGCGCCAAGGCATCATCCt < 1:204851/150‑1 (MQ=255) tCGACCCTGCCCACCCCATTTGGCGAGAAACTGGTGTTGCGCCTGTTCGACCCGCACCAGTTGCAAGAGGGCTTCGACCGCCTTGGCCTGCACGGCCAGCAACTGGCCCAATGGCAGCGCCTGCTTCGTCAGCGCCAAGGCATCATCCTg < 1:98979/150‑1 (MQ=255) tCGACCCTGCCCACCCCATTTGGCGAGAAACTGGTGTTGCGCCTGTTCGACCCGCACCAGTTGCAAGAGGGCTTCGACCGCCTTGGCCTGCACGGCCAGCAACTGGCCCAATGGCAGCGCCTGCTTCGTCAGCGCCAAGGCATCATCCTg < 1:206043/150‑1 (MQ=255) ccACCCCATTTGGCGAGAAACTGGTGTTGCGCCTGTTCGACCCGCACCAGTTGCAAGAGGGCTTCGACCGCCTTGGCCTGCACGGCCAGCAACTGGCCCAATGGCAGCGCCTGCTTCGTCAGCGCCAAGGCATCATCCTGGTCACCGGcc > 2:237429/1‑150 (MQ=255) ggCGAGAAACTGGTGTTGCGCCTGTTCGACCCGCACCAGTTGCAAGAGGGCTTCGACCGCCTTGGCCTGCACGGCCAGCAACTGGCCCAATGGCAGCGCCTGCTTCGTCAGCGCCAAGGCATCATCCTGGTCACCGGCCCCACCGGCTcc < 1:191389/150‑1 (MQ=255) aaCTGGTGTTGCGCCTGTTCGACCCGCACCAGTTGCAAGAGGCCTTCGACCGCCTTGGCCTGCACGGCCAGCAACCGGCCCAATGGCAGCCCCTGCTTCGTCAGCGCCAAGGCATCATCCTGGTCACCGGCCCCACCGGCTCCGGCAAGa < 1:16770/150‑1 (MQ=255) aCTGGTGTTGCGCCTGTTCGACCCGCACCAGTTGCAAGAGGGCTTCGACCGCCTTGGCCTGCACGGCCAGCAACTGGCCCAATGGCAGCGCCTGCTTCGTCAGCGCCAAGGCATCATCCTGGTCACCGGCCCCACCGGCTCCGGCAAGAc < 2:153437/150‑1 (MQ=255) aCTGGTGTTGCGCCTGTTCGACCCGCACCAGTTGCAAGAGGGCTTCGACCGCCTTGGCCTGCACGGCCAGCAACTGGCCCAATGGCAGCGCCTGCTTCGTCAGCGCCAAGGCATCATCCTGGTCACCGGCCCCACCGGCTCCGGCAAGAc > 1:225838/1‑150 (MQ=255) gcgcCTGTTCGACCCGCACCAGTTGCAAGAGGGCTTCGACCGCCTTGGCCTGCACGGCCAGCAACTGGCCCAATGGCAGCGCCTGCTTCGTCAGCGCCAAGGCATCATCCTGGTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCt < 2:355168/150‑1 (MQ=255) ccGCACCAGTTGCAAGAGGGCTTCGACCGCCTTGGCCTGCACGGCCAGCAACTGGCCCAATGGCAGCGCCTGCTTCGTCAGCGCCAAGGCATCATCCTGGTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTg > 2:177498/1‑138 (MQ=255) ccGCACCAGTTGCAAGAGGGCTTCGACCGCCTTGGCCTGCACGGCCAGCAACTGGCCCAATGGCAGCGCCTGCTTCGTCAGCGCCAAGGCATCATCCTGGTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTg < 1:177498/138‑1 (MQ=255) ttGCAAGAGGGCTTCGACCGCCTTGGCCTGCACGGCCAGCAACTGGCCCAATGGCAGCGCCTGCTTCGTCAGCGCCAAGGCATCATCCTGGTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAActgctg < 1:237429/150‑1 (MQ=255) tcgatcgggtcttcgatggtgctcaggttgacctgtggtgtggccagcagtttgaggctggtgtacagcgtgCTGGTCACCGGCCCCACCGGCTCCGGCAAGACCa > 1:27934‑M1/73‑106 (MQ=255) tcgatcgggtcttcgatggtgcacaggttgacctgtggtgtggccagcagtttgaggctggtgtacagcgtgCTGGTCACCGGCCCCACCGGCTCCGGCAAGACCa < 2:27934‑M1/34‑1 (MQ=255) ccTGCACGGCCAGCAACTGGCCCAATGGCAGCGCCTGCTTCGTCAGCGCCAAGGCATCATCCTGGTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGc > 2:42818/1‑101 (MQ=255) ccTGCACGGCCAGCAACTGGCCCAATGGCAGCGCCTGCTTCGTCAGCGCCAAGGCATCATCCTGGTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGc < 1:42818/101‑1 (MQ=255) accacaggtcaacctgtggtgtggccagcagtttgaggctggtgtacagcgtgCTg > 2:88149‑M1/54‑56 (MQ=255) accacaggtcaacctgtggtgtggccagcagtttgaggctggtgtacagcgtgCTg < 1:88149‑M1/3‑1 (MQ=255) ccAGCAACTGGCCCAATGGCAGCGCCTGCTTCGTCAGCGCCAAGGCATCATCCTGGTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGAAGa > 1:249222/1‑150 (MQ=255) cAGCAACTGGCCCAATGGCAGCGCCTGCTTCGTCAGCGCCAAGGCATCATCCTGGTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGAAGAc > 2:281788/1‑150 (MQ=255) tGGCCCAATGGCAGCGCCTGCTTCGTCAGCGCCAAGGCATCATCCTGGTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCCCAAACTGCTGGCCCACCCCCAGGTCAACCTGTGCACCATCGAAGACCCGATCg > 2:217097/1‑150 (MQ=255) agcagtttgaggctggtgtacagcgtgCTGGTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTaca < 2:136988‑M1/46‑1 (MQ=255) agcagtttgaggctggtgtacagcgtgCTGGTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTaca > 1:136988‑M1/28‑73 (MQ=255) gcCAAGGCATCATCCTGGTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGAAGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGc < 2:234369/150‑1 (MQ=255) aGGCATCATCCTGGTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGAAGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGt > 1:75230/1‑150 (MQ=255) aGGCATCATCCTGGTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGAAGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGt > 1:228915/1‑150 (MQ=255) ggCATCATCCTGGTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGAAGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTg < 2:225838/150‑1 (MQ=255) tcatcCTGGTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGAAGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTGCAGc < 1:281788/150‑1 (MQ=255) | TTCGACCCTGCCCACCCCATTTGGCGAGAAACTGGTGTTGCGCCTGTTCGACCCGCACCAGTTGCAAGAGGGCTTCGACCGCCTTGGCCTGCACGGCCAGCAACTGGCCCAATGGCAGCGCCTGCTTCGTCAGCGCCAAGGCATCATCCTGGTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGAAGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTGCAGC > NC_002947/5920334‑5920626 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |