New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4722310 =	19 (1.170)	3 (0.190)	3/248	NT	15.6%	coding (1300/1905 nt)	htpG	chaperone protein HtpG
	?	NC_002947	4722348 =	14 (0.890)					coding (1262/1905 nt)	htpG	chaperone protein HtpG

GCCGTCGAATTCGTTGAGGTAGCTCATCAGCCACTCGTCGATGCGATCAGTGAGCAGCAGCACTTCGATGCCTTTCTTGCGGAAGACTTCCAGGTGCGGGCTGTTCTTGACCTGCGCGTACGACTCGCCGGTGAGATAGTAGATCTTGTCCTGACCTTCCTTGGCGCGGGCCAGGTAGTCGGCCAGGGCGACGCTCTGCTCGCCGCTGTCGTCCTGGGTGGACGCAAAGCGCAGCAGACCGGCGATTTTCTCCTTGTTGGCGAAGTCTTCGGCCGGGCCCTCTTTCAGCAC  >  NC_002947/4722161‑4722451                                                                                                                                                      |                                                                                                                                              aacgaacccgagaaatacaagggcttctggaaaaacttcggtcaggtgctgaaagagggcccggccgaagacttcgccaacaaggagaaaatcgccggtctgctgcgctttgcgtccacccaggacgacagcggcgagcagagcgtcgcc                                                                                                                                               >  1:267188‑M1/150‑150 (MQ=255)   cgaacccgagaaatacaagggcttctggaaaaacttcggtcaggtgctgaaagagggcccggccgaagacttcgccaacaaggagaaaatcgccggtctgctgcgctttgcgtccacccaggacgacagcggcgagcagagcgtcgcCCt                                                                                                                                             >  1:242402‑M1/148‑150 (MQ=255)      cGAATTCGTTGAGGTAGCTCATCAGCCACTCGTCGATGCGATCAGTGAGCAGCAGCACTTCGATGCCTTTCTTGCGGAAGACTTCCAGGTGCGGGCTGTTCTTGACCTGCGCGTACGACTCGCCGGTGAGATAGTAGATCTTGTCCTGAc                                                                                                                                          <  2:146744/150‑1 (MQ=255)          ttCGTTGAGGTAGCTCATCAGCCACTCGTCGATGCGATCAGTGAGCAGCAGCACTTCGATGCCTTTCTTGCGGAAGACTTCCAGGTGCGGGCTGTTCTTGACCTGCGCGTACGACTCGCCGGTGAGATAGTAGATCTTGTCCTGAccttc                                                                                                                                      <  2:301275/150‑1 (MQ=255)                    tatcTCATCAGCCACTCGTCGATGCGATCAGTGAGCAGCAGCACTTCGATGCCTTTCTTGCGGAAGACTTCCAGGTGCGGGCTGTTCTTGTCCTGCGCGTACAACTCGCCGGTGAGATAGTAGATCTTGGCCTGACCTCCCTTGGCGCgg                                                                                                                            <  2:12911/147‑1 (MQ=255)                             aGCCACTCGTCGATGCGATCAGTGAGCAGCAGCACTTCGATGCCTTTCTTGCGGAAGACTTCCAGGTGCGGGCTGTTCTTGACCTGCGCGTACGACTCGCCGGTGAGATAGTAGATCTTGTCCTGACCTTCCTTGGCGCGGGCCAGGTAg                                                                                                                   >  2:130526/1‑150 (MQ=255)                                 aCTCGTCGATGCGATCAGTGAGCAGCAGCACTTCGATGCCTTTCTTGCGGAAGACTTCCAGGTGCGGGCTGTTCTTGACCTGCGCGTACGACTCGCCGGTGAGATAGTAGATCTTGTCCTGACCTTCCTTGGCGCGGGCCAGGTAGTCgg                                                                                                               >  1:189770/1‑150 (MQ=255)                                    cttcggtcaggtgctgagagagggcccggccgaagacttcgccaacaaggagaaaatcgccggtctgctgcgctttgcgtccacccaggacgacagcggcgagcagagcgtcgcCCTGACCTTCCTTGGCGCGGGCCAGGTAGTCGGCCa                                                                                                            >  2:9944‑M1/115‑150 (MQ=255)                                        gATGCGATCAGTGAGCAGCAGCACTTCGATGCCTTTCTTGCGGAAGACTTCCAGGTGCGGGCTGTTCTTGACCTGCGCGTATTACTCGCCGGTGAGATAGTAGATCTTGTCCTGACCTTCCTTGGCGCGGGCCAGGTAGTCGGCCAGGGc                                                                                                        <  2:218411/150‑1 (MQ=255)                                         aTGCGATCAGTGAGCAGCAGCACTTCGATGCCTTTCTTGCGGAAGACTGCCAGGTGCGGGCTGTTCTTGACCTGCGCGTACGACTCGCCGGTGAGATAGTAGATCTTGTCCTGACCTTCCTTGGCGCGGGCCAGGTAGTCGGCCAGGGCg                                                                                                       >  2:239686/1‑150 (MQ=255)                                                                ttCGATGCCTTTCTTGCGGAAGACTTCCAGGTGCGGGCTGTTCTTGACCTGCGCGTACGACTCGCCGGTGAGATAGTAGATCTTGTCCTGACCTTCCTTGGCGCGGGCCAGGTAGTCGGCCAGGGCGACGCTCTGCTCGCCGCTgtcgtc                                                                                <  1:340752/150‑1 (MQ=255)                                                                        cTTTCTTGCGGAAGACTTCCAGGTGCGGGCTGTTCTTGACCTGCGCGTACGACTCGCCGGTGAGATAGTAGATCTTGTCCTGACCTTCCTTGGCGCGGGCCAGGTAGTCGGCCAGGGCGACGCTCTGCTCGCCGCTGTCGTCCTGGGTgg                                                                        >  1:105156/1‑150 (MQ=255)                                                                         ttcgccaacaaggagaaaatcgccggtctgctgcgctttgcgtccacccaggacgacagcggcgagcagagcgtcgcCCTGACCTTCCTTGGCGCGGGCCAGGTAGTCGGCCAgg                                                                                                          <  1:61538‑M1/38‑1 (MQ=255)                                                                         ttcgccaacaaggagaaaatcgccggtctgctgcgctttgcgtccacccaggacgacagcggcgagcagagcgtcgcCCTGACCTTCCTTGGCGCGGGCCAGGTAGTCGGCCAgg                                                                                                          >  2:61538‑M1/78‑115 (MQ=255)                                                                                 ggAAGACTTCCAGGTGCGGGCTGTTCTTGACCTGCGCGTACGACTCGCCGGTGAGATAGTAGATCTTGTCCTGACCTTCCTTGGCGCGGGCCAGGTAGTCGGCCAGGGCGACGCTCTGCTCGCCGCTGTCGTCCTGGGTGGACGCAAAgc                                                               >  2:388842/1‑150 (MQ=255)                                                                                                                 tGCGCGTACGACTCGCCGGTGAGATAGTAGATCTTGTCCTGACCTTCCTTGGCGCGGGCCAGGTAGTCGGCCAGGGCGACGCTCTGCTCGCCGCTGTCGTCCTGGGTGGACGCAAAGCGCAGCAGACCGGCGATTTTCTCCTTGTTGGCg                               <  2:105156/150‑1 (MQ=255)                                                                                                                   cgcgTACGACTCGCCGGTGAGATAGTAGATCTTGTCCTGACCTTCCTTGGCGCGGGCCAGGTAGTCGGCCAGGGCGACGCTCTGCTCGCCGCTGTCGTCCTGGGTGGACGCAAAGCGCAGCAGACCGGCGATTTTCTCCTTGTTGGCGaa                             <  1:239686/150‑1 (MQ=255)                                                                                                                          gACTCGCCGGTGAGATAGTAGATCTTGTCCTGACCTTCCTTGGCGCGGGCCAGGTAGTCGGCCAGGGCGACGCTCTGCTCGCCGCTGTCGTCCTGGGTGGACGCAAAGCGCAGCAGACCGGCGATTTTCTCCTTGTTGGCGAAGTCTTCg                      >  2:438879/1‑150 (MQ=255)                                                                                                                                 cGGTGAGATAGTAGATCTTGTCCTGACCTTCCTTGGCGCGGGCCAGGTAGTCGGCCAGGGCGACGCTCTGCTCGCCGCTGTCGTCCTGGGTGGACGCAAAGCGCAGCAGACCGGCGATTTTCTCCTTGTTGGCGAAGTCTTCGGCCGGGc               <  1:438879/150‑1 (MQ=255)                                                                                                                                  ggTGAGATAGTAGATCTTGTCCTGACCTTCCTTGGCGCGGGCCAGGTAGTCGGCCAGGGCGACGCTCTGCTCGCCGCTGTCGTCCTGGGTGGACGCAAAGCGCAGCAGACCGGCGATTTTCTCCTTGTTGGCGAAGTCTTCGGCCGGGcc              >  1:242729/1‑150 (MQ=255)                                                                                                                                            tagATCTTGTCCTGACCTTCCTTGGCGCGGGCCAGGTAGTCGGCCAGGGCGACGCTCTGCTCGCCGCTGTCGTCCTGGGTGGACGCAAAGCGCAGCAGACCGGCGATTTTCTCCTTGTTGGCGAAGTCTTCGGCCGGGCCCTCTTTCAGc    <  2:242729/150‑1 (MQ=255)                                                                                                                                              gATCTTGTCCTGACCTTCCTTGGCGCGGGCCAGGTAGTCGGCCAGGGCGACGCTCTGCTCGCCGCTGTCTTCCTGGGTCGCAAAAAACCCCAGCTGACCGGCGATTTTCTCCTTGTTGGCGAAGTCTTCGGCCGGGCCCTCTTTCAGCAc  >  1:144780/1‑150 (MQ=255)                                                                                                                                                tCTTGTCCTGACCTTCCTTGGCGCGGGCCAGGTAGTCGGCCAGGGCGACGCTCTGCTCGCCGCTGTCGTGCTGGGTGGACGCAAAGCGCAGCAGACCGGCGATTTTCTCCTTGTTGGCGAAGTCTTCGGCCGGGCCCTCTTTCAg     >  2:188100/1‑145 (MQ=255)                                                                                                                                                tCTTGTCCTGACCTTCCTTGGCGCGGGCCAGGTAGTCGGCCAGGGCGACGCTCTGCTCGCCGCTGTCGTCCTGGGTGGACGCAAAGCGCAGCAGACCGGCGATTTTCTCCTTGTTGGCGAAGTCTTCGGCCGGGCCCTCTTTCAg     <  1:188100/145‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                              GCCGTCGAATTCGTTGAGGTAGCTCATCAGCCACTCGTCGATGCGATCAGTGAGCAGCAGCACTTCGATGCCTTTCTTGCGGAAGACTTCCAGGTGCGGGCTGTTCTTGACCTGCGCGTACGACTCGCCGGTGAGATAGTAGATCTTGTCCTGACCTTCCTTGGCGCGGGCCAGGTAGTCGGCCAGGGCGACGCTCTGCTCGCCGCTGTCGTCCTGGGTGGACGCAAAGCGCAGCAGACCGGCGATTTTCTCCTTGTTGGCGAAGTCTTCGGCCGGGCCCTCTTTCAGCAC  >  NC_002947/4722161‑4722451

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.