New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4722310 =	19 (1.170)	3 (0.190)	3/248	NT	15.6%	coding (1300/1905 nt)	htpG	chaperone protein HtpG
	?	NC_002947	4722348 =	14 (0.890)					coding (1262/1905 nt)	htpG	chaperone protein HtpG

GATGCGATCAGTGAGCAGCAGCACTTCGATGCCTTTCTTGCGGAAGACTTCCAGGTGCGGGCTGTTCTTGACCTGCGCGTACGACTCGCCGGTGAGATAGTAGATCTTGTCCTGACCTTCCTTGGCGCGGGCCAGGTAGTCGGCCAGGGCGACGCTCTGCTCGCCGCTGTCGTCCTGGGTGGACGCAAAGCGCAGCAGACCGGCGATTTTCTCCTTGTTGGCGAAGTCTTCGGCCGGGCCCTCTTTCAGCACCTGACCGAAGTTTTTCCAGAAGCCCTTGTATTTCTCGGGTTCGTT  >  NC_002947/4722200‑4722496                                                                                                                                                     |                                                                                                                                                     gATGCGATCAGTGAGCAGCAGCACTTCGATGCCTTTCTTGCGGAAGACTTCCAGGTGCGGGCTGTTCTTGACCTGCGCGTATTACTCGCCGGTGAGATAGTAGATCTTGTCCTGACCTTCCTTGGCGCGGGCCAGGTAGTCGGCCAGGGc                                                                                                                                                     <  2:218411/150‑1 (MQ=255)  aTGCGATCAGTGAGCAGCAGCACTTCGATGCCTTTCTTGCGGAAGACTGCCAGGTGCGGGCTGTTCTTGACCTGCGCGTACGACTCGCCGGTGAGATAGTAGATCTTGTCCTGACCTTCCTTGGCGCGGGCCAGGTAGTCGGCCAGGGCg                                                                                                                                                    >  2:239686/1‑150 (MQ=255)                         ttCGATGCCTTTCTTGCGGAAGACTTCCAGGTGCGGGCTGTTCTTGACCTGCGCGTACGACTCGCCGGTGAGATAGTAGATCTTGTCCTGACCTTCCTTGGCGCGGGCCAGGTAGTCGGCCAGGGCGACGCTCTGCTCGCCGCTgtcgtc                                                                                                                             <  1:340752/150‑1 (MQ=255)                                 cTTTCTTGCGGAAGACTTCCAGGTGCGGGCTGTTCTTGACCTGCGCGTACGACTCGCCGGTGAGATAGTAGATCTTGTCCTGACCTTCCTTGGCGCGGGCCAGGTAGTCGGCCAGGGCGACGCTCTGCTCGCCGCTGTCGTCCTGGGTgg                                                                                                                     >  1:105156/1‑150 (MQ=255)                                          ggAAGACTTCCAGGTGCGGGCTGTTCTTGACCTGCGCGTACGACTCGCCGGTGAGATAGTAGATCTTGTCCTGACCTTCCTTGGCGCGGGCCAGGTAGTCGGCCAGGGCGACGCTCTGCTCGCCGCTGTCGTCCTGGGTGGACGCAAAgc                                                                                                            >  2:388842/1‑150 (MQ=255)                                                                          tGCGCGTACGACTCGCCGGTGAGATAGTAGATCTTGTCCTGACCTTCCTTGGCGCGGGCCAGGTAGTCGGCCAGGGCGACGCTCTGCTCGCCGCTGTCGTCCTGGGTGGACGCAAAGCGCAGCAGACCGGCGATTTTCTCCTTGTTGGCg                                                                            <  2:105156/150‑1 (MQ=255)                                                                            cgcgTACGACTCGCCGGTGAGATAGTAGATCTTGTCCTGACCTTCCTTGGCGCGGGCCAGGTAGTCGGCCAGGGCGACGCTCTGCTCGCCGCTGTCGTCCTGGGTGGACGCAAAGCGCAGCAGACCGGCGATTTTCTCCTTGTTGGCGaa                                                                          <  1:239686/150‑1 (MQ=255)                                                                                   gACTCGCCGGTGAGATAGTAGATCTTGTCCTGACCTTCCTTGGCGCGGGCCAGGTAGTCGGCCAGGGCGACGCTCTGCTCGCCGCTGTCGTCCTGGGTGGACGCAAAGCGCAGCAGACCGGCGATTTTCTCCTTGTTGGCGAAGTCTTCg                                                                   >  2:438879/1‑150 (MQ=255)                                                                                          cGGTGAGATAGTAGATCTTGTCCTGACCTTCCTTGGCGCGGGCCAGGTAGTCGGCCAGGGCGACGCTCTGCTCGCCGCTGTCGTCCTGGGTGGACGCAAAGCGCAGCAGACCGGCGATTTTCTCCTTGTTGGCGAAGTCTTCGGCCGGGc                                                            <  1:438879/150‑1 (MQ=255)                                                                                           ggTGAGATAGTAGATCTTGTCCTGACCTTCCTTGGCGCGGGCCAGGTAGTCGGCCAGGGCGACGCTCTGCTCGCCGCTGTCGTCCTGGGTGGACGCAAAGCGCAGCAGACCGGCGATTTTCTCCTTGTTGGCGAAGTCTTCGGCCGGGcc                                                           >  1:242729/1‑150 (MQ=255)                                                                                                     tagATCTTGTCCTGACCTTCCTTGGCGCGGGCCAGGTAGTCGGCCAGGGCGACGCTCTGCTCGCCGCTGTCGTCCTGGGTGGACGCAAAGCGCAGCAGACCGGCGATTTTCTCCTTGTTGGCGAAGTCTTCGGCCGGGCCCTCTTTCAGc                                                 <  2:242729/150‑1 (MQ=255)                                                                                                       gATCTTGTCCTGACCTTCCTTGGCGCGGGCCAGGTAGTCGGCCAGGGCGACGCTCTGCTCGCCGCTGTCTTCCTGGGTCGCAAAAAACCCCAGCTGACCGGCGATTTTCTCCTTGTTGGCGAAGTCTTCGGCCGGGCCCTCTTTCAGCAc                                               >  1:144780/1‑150 (MQ=255)                                                                                                         tCTTGTCCTGACCTTCCTTGGCGCGGGCCAGGTAGTCGGCCAGGGCGACGCTCTGCTCGCCGCTGTCGTGCTGGGTGGACGCAAAGCGCAGCAGACCGGCGATTTTCTCCTTGTTGGCGAAGTCTTCGGCCGGGCCCTCTTTCAg                                                  >  2:188100/1‑145 (MQ=255)                                                                                                         tCTTGTCCTGACCTTCCTTGGCGCGGGCCAGGTAGTCGGCCAGGGCGACGCTCTGCTCGCCGCTGTCGTCCTGGGTGGACGCAAAGCGCAGCAGACCGGCGATTTTCTCCTTGTTGGCGAAGTCTTCGGCCGGGCCCTCTTTCAg                                                  <  1:188100/145‑1 (MQ=255)                                                                                                               cctggccgactacctggcccgcgccaaggaaggtcaggGCGACGCTCTGCTCGCCGCTGTCGTCCTGGGTGGACGCAAAGCGCAGCAGACCGGCGATTTTCTCCTTGTTGGCGaa                                                                          <  1:61538‑M2/77‑1 (MQ=255)                                                                                                               cctggccgactacctggcccgcgccaaggaaggtcaggGCGACGCTCTGCTCGCCGCTGTCGTCCTGGGTGGACGCAAAGCGCAGCAGACCGGCGATTTTCTCCTTGTTGGCGaa                                                                          >  2:61538‑M2/39‑115 (MQ=255)                                                                                                                 tggccgactacctggcccgcgccaaggaaggtcaggGCGACGCTCTGCTCGCCGCTGTCGTCCTGGGTGGACGCAAAGCGCAGCAGACCGGCGATTTTCTCCTTGTTGGCGAAGTCTTCGGCCGGGCCCTCTCTCAGCACCTGACCGAAg                                     >  2:9944‑M2/37‑150 (MQ=255)                                                                                                                  GACCTTCCTTGGCGCGGGCCAGGTAGTCGGCCAGGGCGACGCTCTGCTCGCCGCTGTCGTCCTGGGTGGACGCAAAGCGCAGCAGACCGGCGATTTTCTCCTTGTTGGCGAAGTCTTCGGCCGGGCCCTCTTTCAGCACCTGACCGAAGt                                    <  1:403622‑M1/150‑1 (MQ=255)                                                                                                                      ttccttGGCGCGGGCCAGGTAGTCGGCCAGGGCGACGCTCTGCTCGCCGCTGTCGTCCTGGGTGGACGCAAAGCGCACCAGACCGGCGATTTTCTCCTTGTTGGCGAAGTCTTCGGCCGGGCCCTCTTTCAGCACCTGACCGAAGttttt                                <  1:388842/150‑1 (MQ=255)                                                                                                                       tccttGGCGCGGGCCAGGTAGTCGGCCAGGGCGACGCTCTGCTCGCCGCTGTCGTCCTGGGTGGACGCAAAGCGCAGCAGACCGGCGATTTTCTCCTTGTTGGCGAAGTCTTCGGCCGGGCCCTCTTTCAGCACCTGACCGAAGTTTTTc                               <  1:145816/150‑1 (MQ=255)                                                                                                                                                  aggGCGACGCTCTGCTCGCCGCTGTCGTCCTGGGTGGACGCAAAGCGCAGCAGACCGGCGATTTTCTCCTTGTTGGCGAAGTCTTCGGCCGGGCCCTCTTTCAGCACCTGACCGAAGTTTTTCCAGAAGCCCTTGTATTTCTCGGgttcg    >  1:242402‑M2/4‑150 (MQ=255)                                                                                                                                                    gGCGACGCTCTGCTCGCCGCTGTCGTCCTGGGTGGACGCAAAGCGCAGCAGACCGGCGATTTTCTCCTTGTTGGCGAAGTCTTCGGCCGGGCCCTCTTTCAGCACCTGACCGAAGTTTTTCCAGAAGCCCTTGTATTTCTCGGgttcgtt  >  1:267188‑M2/2‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                                     GATGCGATCAGTGAGCAGCAGCACTTCGATGCCTTTCTTGCGGAAGACTTCCAGGTGCGGGCTGTTCTTGACCTGCGCGTACGACTCGCCGGTGAGATAGTAGATCTTGTCCTGACCTTCCTTGGCGCGGGCCAGGTAGTCGGCCAGGGCGACGCTCTGCTCGCCGCTGTCGTCCTGGGTGGACGCAAAGCGCAGCAGACCGGCGATTTTCTCCTTGTTGGCGAAGTCTTCGGCCGGGCCCTCTTTCAGCACCTGACCGAAGTTTTTCCAGAAGCCCTTGTATTTCTCGGGTTCGTT  >  NC_002947/4722200‑4722496

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.