New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5140177 =	23 (1.420)	4 (0.260)	4/246	NT	14.5%	coding (1221/1380 nt)	PP_4524	sodium‑solute symporter
	?	NC_002947	5140211 =	25 (1.610)					coding (1255/1380 nt)	PP_4524	sodium‑solute symporter

CCGGCCTGGTGGTGCTGGGCATCGCGCTGATGGTGAATGATGTGATCAACGCCCTGACCCTGGCTTATAACCTGCTGGTCGGCGGCATGCTGATCCCGCTGATCGGGGCGATCTTCTGGAAGCGTGCGACCACTGCAGGCGCGATTGCCAGCATGTCGCTGGGCTTTGCCACCGCCCTGCTGTTCATGTTCCTGGACGGGCTGGAGGCCAATACGCCGATCTACTACAGCCTGGCAGTAGGGCTGGTGAGCTTTGTGGGCGTGAGCCTGGTGTCGCGCAAGTCAGTGGCGGCGGTGAA  >  NC_002947/5140029‑5140326                                                                                                                                                     |                                                                                                                                                      ccGGCCTGGTGGTGCTGGGCATCGCGCTGATGGTGAATGATGTGATCAACGCCCTGACCCTGGCTTATAACCTGCTGGTCGGCGGCATGCTGATCCCGCTGATCGGGGCGATCTTCTGGAAGCGTTCGACCACTGCAGGCGCGATTGCCa                                                                                                                                                      <  2:140320/150‑1 (MQ=255)                                  tGAATGATGTGATCAACGCCCTGACCCTGGCTTATAACCTGCTGGTCGGCGGCATGCTGATCCCGCTGATCGGGGCGATCTTCTGGAAGCGTGCGACCACTGCAGGCGCGATTGCCAGCATGTCGCTGGGCTTTGCCACCGCCCTGCTGt                                                                                                                     >  2:123840/1‑150 (MQ=255)                                     ccgccgccactgacttgcgcgacaccaggctcacgcccacaaagctcaccagccctactgccaggctgtagtagatcggcgtattggcctccagcccgtccaggaacatgaaCAGCATGTCGCTGGGCTTTGCCACCGCCCTGCTGtt                                                                                                                    <  2:234371‑M1/36‑1 (MQ=255)                                     ccgccgccactgacttgcgcgacaccaggctcacgcccacaaagctcaccagccctactgccaggctgtagtagatcggcgtattggcctccagcccgtccaggaacatgaaCAGCATGTCGCTGGGCTTTGCCACCGCCCTGCTGtt                                                                                                                    >  1:234371‑M1/113‑148 (MQ=255)                                      tgatgTGATCAACGCCCTGACCCTGGCTTATAACCTGCTGGTCGGCGGCATGCTGATCCCGCTGATCGGGGCGATCTTCTGGAAGCGTGCGACCACTGCAGGCGCGATTGCCAGCATGTCGCTGGGCTTTGCCACCGCCCTGCTGTTCAt                                                                                                                 <  2:224288/150‑1 (MQ=255)                                             aTCAACGCCCTGACCCTGGCTTATAACCTGCTGGTCGGCGGCATGCTGATCCCGCTGATCGGGGCGATCTTCTGGAAGCGTGCGACCACTGCAGGCGCGATTGCCAGCATGTCGCTGGTCTTTGCCACCGCCCTGCTGTTCATTTTGCTg                                                                                                          >  2:90910/1‑150 (MQ=255)                                             aTCAACGCCCTGACCCTGGCTTATAACCTGCTGGTCGGCGGCATGCTGATCCCGCTGATCGGGGCGATCTTCTGGAAGCGTGCGACCACTGCAGGCGCGATTGCCAGCATGTCGCTGGGCTTTGCCACCGCCCTGCTGTTCATGTTCCt                                                                                                           <  1:293049/149‑1 (MQ=255)                                             aTCAACGCCCTGACCCTGGCTTATAACCTGCTGGTCGGCGGCATGCTGATCCCGCTGATCGGGGCGATCTTCTGGAAGCGTGCGACCACTGCAGGCGCGATTGCCAGCATGTCGCTGGGCTTTGCCACCGCCCTGCTGTTCATGTTCCt                                                                                                           >  2:293049/1‑149 (MQ=255)                                                     ccTGACCCTGGCTTATAACCTGCTGGTCGGCGGCATGCTGATCCCGCTGATCGGGGCGATCTTCTGGAAGCGTGCGACCACTGCAGGCGCGATTGCCAGCATGTCGCTGGGCTTTGCCACCGCCCTGCTGTTCATGTTCCTGGACGGGCt                                                                                                  >  2:277869/1‑150 (MQ=255)                                                         aCCCTGGCTTATAACCTGCTGGTCGGCGGCATGCTGATCCCGCTGATCGGGGCGATCTTCTGGAAGCGTGCGACCACTGCAGGCGCGATTGCCAGCATGTCGCTGGGCTTTGCCACCGCCCTGCTGTTCATGTTCCTGGACGGGCTGGAg                                                                                              <  1:130909/150‑1 (MQ=255)                                                          cccTGGCTTATAACCTGCTGGTCGGCGGCATGCTGATCCCGCTGATCGGGGCGATCTTCTGGAAGCGTGCGACCACTGCAGGCGCGATTGCCAGCATGTCGCTGGGCTTTGCCACCGCCCTGCTGTTCATGTTCCTGGACGGGCTGGAgg                                                                                             <  1:123840/150‑1 (MQ=255)                                                           ccTGGCTTATAACCTGTTGGTCGGCGGCATGCTGATCCCGCTGATCGGGGCGATCTTCTGGAAGCGTGCGACCACTGCAGGCGCGATTGCCAGCATGTCGCTGGGCTTTGCCACCGCCCTGCTGTTCATGTTCCTGGACGGGCTGGAGGc                                                                                            >  1:55761/1‑150 (MQ=255)                                                               gCTTATAACCTGCTGGTCGGCGACATGCTGATCCCGCTGATCGGGGCGATCTTCTGGAAGCGTGCGACCACTGCAGGCGCGATTGCCAGCATGTCGCTGGGCTTTGCCCCCTTCCTGCTGTTCATGTTCCTGGACGGGCTGGAGGCCAAt                                                                                        >  1:227919/1‑150 (MQ=255)                                                                    taACCTGCTGGTCGGCGGCATGCTGATCCCGCTGATCGGGGCGATCTTCTGGAAGCGTGCGACCACTGCAGGCGCGATTGCTAGCATGTCGCGGTGCTTTGCCACCGGCCTGCGGTTCGTGTGTCTGTACTGGTGTGGGGCCAATACGca                                                                                   >  2:427066/1‑149 (MQ=255)                                                                       gcccacaaagctcaccagccctactgccaggctgtagtagatcggcgtattggcctccagcccgtccaggaacatgaaCAGCATGTCGCTGGGCTTTGCCACCGCCctgct                                                                                                                       >  2:331287‑M1/79‑111 (MQ=255)                                                                       gcccacaaagctcaccagccctactgccaggctgtagtagatcggcgtattggcctccagcccgtccaggaacatgaaCAGCATGTCGCTGGGCTTTGCCACCGCCctgct                                                                                                                       <  1:331287‑M1/33‑1 (MQ=255)                                                                        ctgctgGTCGGCGGCATGCTGATCCAGCGAAGCGGGGCGATCTTCTGGAAGCGTGCGACCACTGCAGGCGCGATTGCCAGCATGTCGCTGGGCTTTGCCACCGCCCTGCTGTTCATGATCCTGGACGGGCTGAAGGCCAATACGCCGATc                                                                               >  1:11931/1‑150 (MQ=255)                                                                                       aTGCTGATCCCGCTGATCGGGGCGATCTTCTGGAAGCGTGCGACCACTGCAGGCGCGGGTGCCAGCATGTCGCTGGGCTTTGCCACCGCCCTGCTGTTCATGTTCCTGGACGGGCTGGAGGCCAATACGCCGATCTACTACAGCCTGGCa                                                                <  2:60735/150‑1 (MQ=255)                                                                                          cTGATCCCGCTGATCGGGGCGATCTTCTGGAAGCGTGCGACCACTGCAGGCGCGATTGCCAGCATGTCGCTGGGCTTTGCCACCGCCCTGCTGTTCATGTTCCTGGACGGGCTGGAGGCCAATACGCCGATCTACTACAGCCTGGCAGTa                                                             <  2:264078/150‑1 (MQ=255)                                                                                             aTCCCGCTGATCGGGGCGATCTTCTGGAAGCGTGCGACCACTGCAGGCGCGATTGCCAGCATGTCGCTGGGCTTTGCCACCGCCCTGCTGTTCATGTTCCTGGACGGGCTGGAGGCCAATACGCCGATCTACTACAGCCTGGCAGTAggg                                                          >  1:95679/1‑150 (MQ=255)                                                                                               cccGCTGATCGGGGCGCTCTTCTGGAAGCGTGCGACCACTGCAGGCGCGATTGCCAGCATGTCGCTg                                                                                                                                           <  1:201449/67‑1 (MQ=255)                                                                                               cccGCTGATCGGGGCGATCTTCTGGAAGCGTGCGACCACTGCAGGCGCGATTGCCAGCATGTCGCTg                                                                                                                                           >  2:201449/1‑67 (MQ=255)                                                                                                             cGATCTTCTGGAAGCGTGCGACGACTGCAGGCGCTATGGCCAGCATTTCGCTGGGCTTTGCCACCGCCCTGCTGTTCATGTTCCTGGACGGGCTGGAGGCCAATACGCCGATCTACTACAGCCTGGCAGTAGCGCTGGTGAGCTTTGTgg                                          <  2:227919/150‑1 (MQ=255)                                                                                                             cGATCTTCTGGAAGCGTGCGACCACTGCAGGCGCGATTGCCAGCATGTCGCTGGGCTTTGCCACCGCCCTGCTGTTCATGTTCCTGGACGGGCTGGAGGCCAATACGCCGATCTACTACAGCCTGGCAGTAGGGCTGGTGAGCTTTGTgg                                          <  1:32145/150‑1 (MQ=255)                                                                                                                     tGGAAGCGTGCGACCACTGCAGGCGCGATTGCCAGCATGTCGCTGGGCTTTGCCACCGCCCTGCTGTTCATGTTCCTGGACGGGCTGGAGGCCAATACGCCGATCTACTACAGCCTGGCAGTAGGGCTGGTGAGCttt                                              <  2:294581/138‑1 (MQ=255)                                                                                                                     tGGAAGCGTGCGACCACTGCAGGCGCGATTGCCAGCATGTCGCTGGGCTTTGCCACCGCCCTGCTGTTCATGTTCCTGGACGGGCTGGAGGCCAATACGCCGATCTACTACAGCCTGGCAGTAGGGCTGGTGAGCttt                                              >  1:294581/1‑138 (MQ=255)                                                                                                                                          ggCGCGATTGCCAGCATGTCGCTGGGCTTTGCCACCGCCCTGCTGTTCATGTTCCTGGACGGGCTGGAGGCCAATACGCCGATCTACTACAGCCTGGCAGGAGGGCTGGTGAGCTTTGTGGGCGTGAGCCTGGTGTCGCGCAAGTCAGTg             >  2:162807/1‑150 (MQ=255)                                                                                                                                           gcgcGATTGCCAGCATGTCGCTGGGCTTTGCCACCGCCCTGCTGTTCATGTTCCTGGACGGGCTGGAGGCCAATACGCCGATCTACTACAGCCTGGCAGTAGGGCTGGTGAGCTTTGTGGGCGTGAGCCTGGTGTCGCGCAAGTCAGTgg            >  2:297149/1‑150 (MQ=255)                                                                                                                                                 ttGCCAGCATGTCGCTGGGCTTTGCCACCGCCCTGCTGTTCATGTTCCTGGACGGGCTGGAGGCCAATACGCCGATCTACTACAGCCTGGCAGTAGGGCTGGTGAGCTTTGTGGGCGTGAGCCTGGTGTCGCGCAAGTCAGTGGcggcgg      <  1:297149/150‑1 (MQ=255)                                                                                                                                                     CAGCATGTCGCTGGGCTTTGCCACCGCCCTGCTGTTCATGTTCCTGGACGGGCTGGAGGCCAATACGCCGATCTACTACAGCCTg                                                                   <  2:317305‑M1/85‑1 (MQ=255)                                                                                                                                                     CAGCATGTCGCTGGGCTTTGCCACCGCCCTGCTGTTCATGTTCCTGGACGGGCTGGAGGCCAATACGCCGATCTACTACAGCCTg                                                                   >  1:317305‑M1/1‑85 (MQ=255)                                                                                                                                                     CAGCATGTCGCTGGGCTTTGCCACCGCCCTGCTGTTCATGTTCCTGGACGGGCTGGAGGCCAATACGCCGATCTACTACAGCCTGGCAGTAGGGCTGGTGAGCTTTGTGGGCGTGAGCCTGGTGTCGCGCAAGTCAGTGGCGGCGGTGaa  <  1:39018‑M1/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                      CCGGCCTGGTGGTGCTGGGCATCGCGCTGATGGTGAATGATGTGATCAACGCCCTGACCCTGGCTTATAACCTGCTGGTCGGCGGCATGCTGATCCCGCTGATCGGGGCGATCTTCTGGAAGCGTGCGACCACTGCAGGCGCGATTGCCAGCATGTCGCTGGGCTTTGCCACCGCCCTGCTGTTCATGTTCCTGGACGGGCTGGAGGCCAATACGCCGATCTACTACAGCCTGGCAGTAGGGCTGGTGAGCTTTGTGGGCGTGAGCCTGGTGTCGCGCAAGTCAGTGGCGGCGGTGAA  >  NC_002947/5140029‑5140326

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.