New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 4042090 | 24 (1.240) | 3 (0.160) | 3/250 | NT | 12.4% | coding (134/852 nt) | PP_3563 | hypothetical protein |
? | NC_002947 | = 4042115 | 19 (1.010) | coding (159/852 nt) | PP_3563 | hypothetical protein |
TGTCGCCTTGTCACTGGGCCTGGTCGTTTCGACCGGGGCGCTGGCAGCCACCGGCGAAGAGGCGCAGTTGATCGATTCGATCAATGTCTACCGCAGCAAGGCCCAGCCCTGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4041977‑4042090 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggCGGCAGTTCCAACGACGCCTCGCCACCGCAGGGCTGGGCCTTGCTGCGGTAGACATTGATCGAATCGATCAACTGCGCCTCTTCGCCGGTGGCTGCCAGCGCCCCGGTCGAAACGACCAGGCCCAGTGACAAGGCGACAACGGATGTCA < NC_002947/4042115‑4041967 TGTCGCCTTGTCACTGGGCCTGGTCGTTTCGACCGGGGCGCTGGCAGCCACCGGCGAAGAGGCGCAGTTGATCGATTCGATCAATGTCTACCGCAGCAAGGCCCAGCCCTGCGGCGGCAGTTCCAACGACGCCTCGCCACCGCAGGGCTG < 1:88021/150‑1 TTCGACCGGGGCGCTGGCAGCCACCGGCGAAGAGGCGCAGTTGATCGATTCGATCAATGTCTACCGCAGCAAGGCCCAGCCCTGCGGCGGCAGTTCCAACGACGCCTCGCCACCGCAGGGCT > 1:229502/1‑122 TTCGACCGGGGCGCTGGCAGCCACCGGCGAAGAGGCGCAGTTGATCGATTCGATCAATGTCTACCGCAGCAAGGCCCAGCCCTGCGGCGGCAGTTCCAACGACGCCTCGCCACCGCAGGGCT < 2:229502/122‑1 GCGGCAGTTCCAACGACGCCTCGCCACCGCAGGGCTGGGCCTTGCTGCGGTAGACATTGATCGAATCGATCAACTGCGCCTCTTCGCCGGTGGCTGCCAGCGCCCCGGTCGAAACGACCAGGCCCAGTGACAAGGCGACAACGGATGTCA < 1:323580/150‑1 TGTCGCCTTGTCACTGGGCCTGGTCGTTTCGACCGGGGCGCTGGCAGCCACCGGCGAAGAGGCGCAGTTGATCGATTCGATCAATGTCTACCGCAGCAAGGCCCAGCCCTGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4041977‑4042090 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggCGGCAGTTCCAACGACGCCTCGCCACCGCAGGGCTGGGCCTTGCTGCGGTAGACATTGATCGAATCGATCAACTGCGCCTCTTCGCCGGTGGCTGCCAGCGCCCCGGTCGAAACGACCAGGCCCAGTGACAAGGCGACAACGGATGTCA < NC_002947/4042115‑4041967 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |