New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4042090	24 (1.240)	3 (0.160)	3/250	NT	12.4%	coding (134/852 nt)	PP_3563	hypothetical protein
	?	NC_002947	= 4042115	19 (1.010)					coding (159/852 nt)	PP_3563	hypothetical protein

TGCGCGTCCTGACATCCGTTGTCGCCTTGTCACTGGGCCTGGTCGTTTCGACCGGGGCGCTGGCAGCCACCGGCGAAGAGGCGCAGTTGATCGATTCGATCAATGTCTACCGCAGCAAGGCCCAGCCCTGCGGTGGCGAGGCGTCGTTGGAACTGCCGCCGCTCAACAGCGACACACGCCTTGCGCTGTCGCCAGAGGGCACCCGCGACCTGCAACAGGCCATGACCCGCGCCGCCTACCCCATGGTCAGCGTCCAGGCCATCAGCCTGTCGGGGCCACGCG  >  NC_002947/4041958‑4042239                                                                                                                                     |                                                                                                                                                      tGCGCGTCCTGACATCCGTTGTCGCCTTGTCACTGGGCCTGGTCGTTTCGACCGGGGCGCTGGCAGCCACCGGCGAAGAGGCGCAGTTGATCGATTCGATCAATGTCTACCGCAGCAAGGCCCAGCCCTGCGGTGGCGAGGCGTCGTTgg                                                                                                                                      <  2:55425/150‑1 (MQ=255)          tGACATCCGTTGTCGCCTTGTCACTGGGCCTGGTCGTTTCGACCGGGGCGCTGGCAGCCACCGGCGAAGAGGCGCAGTTGATCGATTCGATCAATGTCTACCGCAGCAAGGCCCAGCCCTGCGGTGGCGAGGCGTCGTTGGAACTGCCGc                                                                                                                             <  1:323580‑M2/150‑2 (MQ=255)                    tGTCGCCTTGTCACTGGGCCTGGTCGTTTCGACCGGGGCGCTGGCAGCCACCGGCGAAGAGGCGCAGTTGATCGATTCGATCAATGTCTACCGCAGCAAGGCCCAGCCCTGCGGcggcagttccaacgacgcctcgccaccgcagggctg                                                                                                                   <  1:88021‑M1/150‑37 (MQ=255)                        gCCTTGTCACTGGGCCTGGGCGTTTCGACCGGGGCGCTGGCAGCCACCGGCGAAGAGGCGCAGTTGATCGATTCGATCAATGTCTACCGCAGCAAGGCCCAGCCCTGCGGTGGCGAGACGTCGTTGGAACTGCCGCCACTCAACAGCGac                                                                                                               >  2:429260/1‑150 (MQ=255)                           ttGTCACTGGGCCTGGTCGTTTCGACCGGGGCGCTGGCAGCCACCGGCGAAGAGGCGCAGTTGATCGATTCGATCAATGTCTACCGCAGCAAGGCCCAGCCCTGCGGTGGCGAGGCGTCGTTg                                                                                                                                       <  1:132387/123‑1 (MQ=255)                           ttGTCACTGGGCCTGGTCGTTTCGACCGGGGCGCTGGCAGCCACCGGCGAAGAGGCGCAGTTGATCGATTCGATCAATGTCTACCGCAGCAAGGCCCAGCCCTGCGGTGGCGAGGCGTCGTTg                                                                                                                                       >  2:132387/1‑123 (MQ=255)                           ttGTCACTGGGCCTGGTCGTTTCGACCGGGGCGCTGGCAGCCACCGGCGAAGAGGCGCAGTTGATCGATTCGATCAATGTCTACCGCAGCAAGGCCCAGCCCTGCGGTGGCGAGGCGTCGTTg                                                                                                                                       >  2:273599/1‑123 (MQ=255)                           ttGTCACTGGGCCTGGTCGTTTCGACCGGGGCGCTGGCAGCCACCGGCGAAGAGGCGCAGTTGATCGATTCGATCAATGTCTACCGCAGCAAGGCCCAGCCCTGCGGTGGCGAGGCGTCGTTg                                                                                                                                       <  1:273599/123‑1 (MQ=255)                                             gTTTCGACCGGGGCGCTGGCAGCCACCGGCGAAGAGGCGCAGTTGATCGATTCGATCAATGTCTACCGCAGCAAGGCCCAGCCCTGCGGTGGCGAGGCGTCGTTGGAACTGCCGCCGCTCAACAGCGACACACGCCTTGCGCTGTCGCCa                                                                                          <  1:432128/150‑1 (MQ=255)                                               ttCGACCGGGGCGCTGGCAGCCACCGGCGAAGAGGCGCAGTTGATCGATTCGATCAATGTCTACCGCAGCAAGGCCCAGCCCTGCGGcggcagttccaacgacgcctcgccaccgcagggct                                                                                                                    >  1:229502‑M1/1‑87 (MQ=255)                                               ttCGACCGGGGCGCTGGCAGCCACCGGCGAAGAGGCGCAGTTGATCGATTCGATCAATGTCTACCGCAGCAAGGCCCAGCCCTGCGGcggcagttccaacgacgcctcgccaccgcagggct                                                                                                                    <  2:229502‑M1/122‑36 (MQ=255)                                                 cGACCGGGGCGCTGGCAGCCACCGGCGAAGAGGCGCAGTTGATCGATTCGATCAATGTCTACCGCAGCAAGGCCCAGCCCTGCGGTGGCGAGGCGTCGTTGGAACTGCCGCCGCTCAACAGCGACACACGCCTTGCGCTGTCGCCAGAgg                                                                                      <  2:308962/150‑1 (MQ=255)                                                           gcTGGCAGCCACCGGCGAAGAGGCGCAGTTGATCGATTCGATCAATGTCTACCGCAGCAAGGCCCAGCCCTGCGGTGGCGAGGCGTCGTTGGAACTGCCGCCGCTCAACAGCGACACACGCCTTGCGCTGTCGCCAGAGGGCACCCGCGa                                                                            <  2:323580/150‑1 (MQ=255)                                                                 aGCCACCGGCGAAGAGGCGCAGTTGATCGATTCGATCAATGTCTACCGCAGCAAGGCCCAGCCCTGCGGTGGCGAGGCGTCGTTGGAACTGCCGCCGCTCAACAGCGACACACGCCTTgc                                                                                                    >  1:5396/1‑120 (MQ=255)                                                                 aGCCACCGGCGAAGAGGCGCAGTTGATCGATTCGATCAATGTCTACCGCAGCAAGGCCCAGCCCTGCGGTGGCGAGGCGTCGTTGGAACTGCCGCCGCTCAACAGCGACACACGCCTTgc                                                                                                    <  2:5396/120‑1 (MQ=255)                                                                  gCCACCGGCGAAGAGGCGCAGTTGATCGATTCGATCAATGTCTACCGCAGCAAGGCCCAGCCCTGAGGTGGAGACCAGTCGTTGGACCTACCTCCGCTCAACATCGTTACACGCCTTGCGCTGTCGCCAGAGGGCACCCGCGACCTGCaa                                                                     <  1:429260/150‑1 (MQ=255)                                                                    tacgggCGAAGAGGCGCAGTTGATCGATTCGATCAATGTCTACCGCAGCAAGGCCCAGCCCTGCGGTGGCGAGGCGTCGTTGGAACTGCCGCCGCTCAACAGCGACACACGCCTTGCGCTGTCGCCAGAGGGCACCCGCGACCTGCAACa                                                                   >  2:83673/5‑150 (MQ=255)                                                                                 gcgcAGTTGATCGATTCGATCAATGTCTACCGCAGCAAGGCCCAGCCCTGCGGTGGCGAGGCGTCGTTGGAACTgcc                                                                                                                               >  2:100304/1‑77 (MQ=255)                                                                                 gcgcAGTTGATCGATTCGATCAATGTCTACCGCAGCAAGGCCCAGCCCTGCGGTGGCGAGGCGTCGTTGGAACTgcc                                                                                                                               <  1:100304/77‑1 (MQ=255)                                                                                 gcgcAGTTGATCGATTCGATCAATGTCTACCGCAGCAAGGCCCAGCCCTGCGGTGGCGAGGCGTCGTTGGAACTGCCGCCGCTCAACAGCGACACACGCCTTGCGCTGTCGCCAGAGGGCACCCGCGACCTGCAACAGGCCATGACCcgc                                                      >  2:434472/1‑150 (MQ=255)                                                                                             gattcgatCAATGTCTACCGCAGCAAGGCCCAGCCCTGCGGTGGCGAGGCGTCGTTGGAACTGCCGCCGCTCAACAGCGACACACGCCTTGCGCTGTCGCCAGAGGGCACCCGCGACCTGCAACAGGCCATGACCCGCGCCGCCTAcccc                                          >  2:15153/1‑150 (MQ=255)                                                                                                  gatCAATGTCTACCGCAGCAAGGCCCAGCCCTGCGGTGGCGAGGCGTCGTTGGAACTGCCGCCGCTCAACAGCGACACACGCCTTGCGCTGTCGCCAGAGGGCACCCGCGACCTGCAACAGGCCATGACCCGCGCCGCCTACCCCATGGt                                     <  1:15153/150‑1 (MQ=255)                                                                                                    tCAATGTCTACCGCAGCAAGGCCCAGCCCTGCGGTGGCGAGGCGTCGTTGGAACTGCCGCCGCTCAACAGCGACACACGCCTTGCGCTGTCGCCAGAGGGCACCCGCGACCTGCAACAGGCCATGACCCGCGCCGCCTACCCCATGGTCa                                   <  1:77010/150‑1 (MQ=255)                                                                                                             aCCGCAGCAAGGCCCAGCCCTGCGGTGGCGAGGCGTCGTTGGAACTGCCGCCGCTCAACAGCGACACACGCCTTGCGCTGTCGCCAGAGGGCACCCGCGACCTGCAACAGGCCATGACCCGCGCCGCCTACCCCATGGTCAGCGTCCAgg                          >  2:368471/1‑150 (MQ=255)                                                                                                                 cagcaAGGCCCAGCCCTGCGGTGGCGAGGCGTCGTTGGAACTGCCGCCGCTCAACAGCGACACACGCCTTGCGCTGTCGCCAGAGGGCACCCGCGACCTGCAACAGGCCATGACCCGCGCCGCCTACCCCATGGTCAGCGTCCAGGCCAt                      >  1:197035/1‑150 (MQ=255)                                                                                                                   gcaAGGCCCAGCCCTGCGGTGGCGAGGCGTCGTTGGAACTGCCGCCGCTCAACAGCGACACACGCCTTGCGCTGTCGCCAGAGGGCACCCGCGACCTGCAACAGGCCATGACCCGCGCCGCCTACCCCATGGTCAGCGTCCAGGCCATCa                    <  1:368471/150‑1 (MQ=255)                                                                                                                           cAGCCCTGCGGTGGCGAGGCGTCGTTGGAACTGCCGccgcagggctgggccttgctgcggtagacattgatcgaatcgatcaactgcgcctcttcgccggtggctgccagcgccccggtcgaaacgaccaggcccagtgacaaggcgaca            <  1:88021‑M2/150‑115 (MQ=255)                                                                                                                            aGCCCTGCGGTGGCGAGGCGTCGTTGGAACTGCCGccgcagggctgggccttgctgcggtagacattgatcgaatcgatcaactgcgcctcttcgccggtggctgccagcgccccggtcgaa                                       <  2:229502‑M2/122‑88 (MQ=255)                                                                                                                            aGCCCTGCGGTGGCGAGGCGTCGTTGGAACTGCCGccgcagggctgggccttgctgcggtagacattgatcgaatcgatcaactgcgcctcttcgccggtggctgccagcgccccggtcgaa                                       >  1:229502‑M2/1‑35 (MQ=255)                                                                                                                               ccTGCGGTGGCGAGGCGTCGTTGGAACTGCCGCCGCTCAACAGCGACACACGCCTCGCGCTGTCGCCAGAGGGCACCCGCGACCTGCAACAGGCCATGACCCGCGCCGCCTAc                                             >  2:265634/1‑113 (MQ=255)                                                                                                                               ccTGCGGTGGCGAGGCGTCGTTGGAACTGCCGCCGCTCAACAGCGACACACGCCTCGCGCTGTCGCCAGAGGGCACCCGCGACCTGCAACAGGCCATGACCCGCGCCGCCTAc                                             <  1:265634/113‑1 (MQ=255)                                                                                                                                     gcggcagttccaacgacgcctcgccaccgcagggctgggccttgctgcggtagacattgatcgaatcgatcaactgcgcctcttcgccggtggctgccagcgccccggtcgaaacgaccaggcccagtgacaaggcgacaacggatgtca  <  1:323580‑M1/150‑150 (MQ=255)                                                                                                                                     |                                                                                                                                                      TGCGCGTCCTGACATCCGTTGTCGCCTTGTCACTGGGCCTGGTCGTTTCGACCGGGGCGCTGGCAGCCACCGGCGAAGAGGCGCAGTTGATCGATTCGATCAATGTCTACCGCAGCAAGGCCCAGCCCTGCGGTGGCGAGGCGTCGTTGGAACTGCCGCCGCTCAACAGCGACACACGCCTTGCGCTGTCGCCAGAGGGCACCCGCGACCTGCAACAGGCCATGACCCGCGCCGCCTACCCCATGGTCAGCGTCCAGGCCATCAGCCTGTCGGGGCCACGCG  >  NC_002947/4041958‑4042239

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.