| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4042090 | 24 (1.240) | 3 (0.160) | 3/250 | NT | 12.4% | coding (134/852 nt) | PP_3563 | hypothetical protein |
| ? | NC_002947 | = 4042115 | 19 (1.010) | coding (159/852 nt) | PP_3563 | hypothetical protein | |||||
TGACATCCGTTGTCGCCTTGTCACTGGGCCTGGTCGTTTCGACCGGGGCGCTGGCAGCCACCGGCGAAGAGGCGCAGTTGATCGATTCGATCAATGTCTACCGCAGCAAGGCCCAGCCCTGCGGTGGCGAGGCGTCGTTGGAACTGCCGCCGCTCAACAGCGACACACGCCTTGCGCTGTCGCCAGAGGGCACCCGCGACCTGCAACAGGCCATGACCCGCGCCGCCTACCCCATGGTCAGCGTCCAGGCCATCAGCCTGTCGGGGCCACGCGACGCACGCGCCGCCATGC > NC_002947/4041967‑4042257 | tGACATCCGTTGTCGCCTTGTCACTGGGCCTGGTCGTTTCGACCGGGGCGCTGGCAGCCACCGGCGAAGAGGCGCAGTTGATCGATTCGATCAATGTCTACCGCAGCAAGGCCCAGCCCTGCGGTGGCGAGGCGTCGTTGGAACTGCCGc < 1:323580‑M2/150‑2 (MQ=255) gCCTTGTCACTGGGCCTGGGCGTTTCGACCGGGGCGCTGGCAGCCACCGGCGAAGAGGCGCAGTTGATCGATTCGATCAATGTCTACCGCAGCAAGGCCCAGCCCTGCGGTGGCGAGACGTCGTTGGAACTGCCGCCACTCAACAGCGac > 2:429260/1‑150 (MQ=255) gTTTCGACCGGGGCGCTGGCAGCCACCGGCGAAGAGGCGCAGTTGATCGATTCGATCAATGTCTACCGCAGCAAGGCCCAGCCCTGCGGTGGCGAGGCGTCGTTGGAACTGCCGCCGCTCAACAGCGACACACGCCTTGCGCTGTCGCCa < 1:432128/150‑1 (MQ=255) cGACCGGGGCGCTGGCAGCCACCGGCGAAGAGGCGCAGTTGATCGATTCGATCAATGTCTACCGCAGCAAGGCCCAGCCCTGCGGTGGCGAGGCGTCGTTGGAACTGCCGCCGCTCAACAGCGACACACGCCTTGCGCTGTCGCCAGAgg < 2:308962/150‑1 (MQ=255) gcTGGCAGCCACCGGCGAAGAGGCGCAGTTGATCGATTCGATCAATGTCTACCGCAGCAAGGCCCAGCCCTGCGGTGGCGAGGCGTCGTTGGAACTGCCGCCGCTCAACAGCGACACACGCCTTGCGCTGTCGCCAGAGGGCACCCGCGa < 2:323580/150‑1 (MQ=255) aGCCACCGGCGAAGAGGCGCAGTTGATCGATTCGATCAATGTCTACCGCAGCAAGGCCCAGCCCTGCGGTGGCGAGGCGTCGTTGGAACTGCCGCCGCTCAACAGCGACACACGCCTTgc < 2:5396/120‑1 (MQ=255) aGCCACCGGCGAAGAGGCGCAGTTGATCGATTCGATCAATGTCTACCGCAGCAAGGCCCAGCCCTGCGGTGGCGAGGCGTCGTTGGAACTGCCGCCGCTCAACAGCGACACACGCCTTgc > 1:5396/1‑120 (MQ=255) gCCACCGGCGAAGAGGCGCAGTTGATCGATTCGATCAATGTCTACCGCAGCAAGGCCCAGCCCTGAGGTGGAGACCAGTCGTTGGACCTACCTCCGCTCAACATCGTTACACGCCTTGCGCTGTCGCCAGAGGGCACCCGCGACCTGCaa < 1:429260/150‑1 (MQ=255) tacgggCGAAGAGGCGCAGTTGATCGATTCGATCAATGTCTACCGCAGCAAGGCCCAGCCCTGCGGTGGCGAGGCGTCGTTGGAACTGCCGCCGCTCAACAGCGACACACGCCTTGCGCTGTCGCCAGAGGGCACCCGCGACCTGCAACa > 2:83673/5‑150 (MQ=255) gcgcAGTTGATCGATTCGATCAATGTCTACCGCAGCAAGGCCCAGCCCTGCGGTGGCGAGGCGTCGTTGGAACTGCCGCCGCTCAACAGCGACACACGCCTTGCGCTGTCGCCAGAGGGCACCCGCGACCTGCAACAGGCCATGACCcgc > 2:434472/1‑150 (MQ=255) gattcgatCAATGTCTACCGCAGCAAGGCCCAGCCCTGCGGTGGCGAGGCGTCGTTGGAACTGCCGCCGCTCAACAGCGACACACGCCTTGCGCTGTCGCCAGAGGGCACCCGCGACCTGCAACAGGCCATGACCCGCGCCGCCTAcccc > 2:15153/1‑150 (MQ=255) gatCAATGTCTACCGCAGCAAGGCCCAGCCCTGCGGTGGCGAGGCGTCGTTGGAACTGCCGCCGCTCAACAGCGACACACGCCTTGCGCTGTCGCCAGAGGGCACCCGCGACCTGCAACAGGCCATGACCCGCGCCGCCTACCCCATGGt < 1:15153/150‑1 (MQ=255) tCAATGTCTACCGCAGCAAGGCCCAGCCCTGCGGTGGCGAGGCGTCGTTGGAACTGCCGCCGCTCAACAGCGACACACGCCTTGCGCTGTCGCCAGAGGGCACCCGCGACCTGCAACAGGCCATGACCCGCGCCGCCTACCCCATGGTCa < 1:77010/150‑1 (MQ=255) aCCGCAGCAAGGCCCAGCCCTGCGGTGGCGAGGCGTCGTTGGAACTGCCGCCGCTCAACAGCGACACACGCCTTGCGCTGTCGCCAGAGGGCACCCGCGACCTGCAACAGGCCATGACCCGCGCCGCCTACCCCATGGTCAGCGTCCAgg > 2:368471/1‑150 (MQ=255) cagcaAGGCCCAGCCCTGCGGTGGCGAGGCGTCGTTGGAACTGCCGCCGCTCAACAGCGACACACGCCTTGCGCTGTCGCCAGAGGGCACCCGCGACCTGCAACAGGCCATGACCCGCGCCGCCTACCCCATGGTCAGCGTCCAGGCCAt > 1:197035/1‑150 (MQ=255) gcaAGGCCCAGCCCTGCGGTGGCGAGGCGTCGTTGGAACTGCCGCCGCTCAACAGCGACACACGCCTTGCGCTGTCGCCAGAGGGCACCCGCGACCTGCAACAGGCCATGACCCGCGCCGCCTACCCCATGGTCAGCGTCCAGGCCATCa < 1:368471/150‑1 (MQ=255) cAGCCCTGCGGTGGCGAGGCGTCGTTGGAACTGCCGccgcagggctgggccttgctgcggtagacattgatcgaatcgatcaactgcgcctcttcgccggtggctgccagcgccccggtcgaaacgaccaggcccagtgacaaggcgaca < 1:88021‑M2/150‑115 (MQ=255) aGCCCTGCGGTGGCGAGGCGTCGTTGGAACTGCCGccgcagggctgggccttgctgcggtagacattgatcgaatcgatcaactgcgcctcttcgccggtggctgccagcgccccggtcgaa < 2:229502‑M2/122‑88 (MQ=255) aGCCCTGCGGTGGCGAGGCGTCGTTGGAACTGCCGccgcagggctgggccttgctgcggtagacattgatcgaatcgatcaactgcgcctcttcgccggtggctgccagcgccccggtcgaa > 1:229502‑M2/1‑35 (MQ=255) ccTGCGGTGGCGAGGCGTCGTTGGAACTGCCGCCGCTCAACAGCGACACACGCCTCGCGCTGTCGCCAGAGGGCACCCGCGACCTGCAACAGGCCATGACCCGCGCCGCCTAc > 2:265634/1‑113 (MQ=255) ccTGCGGTGGCGAGGCGTCGTTGGAACTGCCGCCGCTCAACAGCGACACACGCCTCGCGCTGTCGCCAGAGGGCACCCGCGACCTGCAACAGGCCATGACCCGCGCCGCCTAc < 1:265634/113‑1 (MQ=255) gCGAGGCGTCGTTGGAACTGCCGCCGCTCAACAGCGACACACGCCTTGCGCTGTCGCCAGAGGGCACCCGCGACCTGCAACAGGCCATGACCCGCGCCGCCTACCCCATGGTCAGCGTCCAGGCCATCAGCCTGTCGGGGCCACGCGacg > 2:90403/1‑150 (MQ=255) aaCTGCCGCCGCTCAACAGCGACACACGCCTTGCGCTGTCGCCAGAGGGCACCCGCGACCTGCAACAGGCCATGACCCGCGCCGCCTACCCCATGGTCAGCGTCCAGGCCATCAGCCTGTCGGGGCCACGCGACGCACGCGCCGCcatgc > 2:80895/1‑150 (MQ=255) | TGACATCCGTTGTCGCCTTGTCACTGGGCCTGGTCGTTTCGACCGGGGCGCTGGCAGCCACCGGCGAAGAGGCGCAGTTGATCGATTCGATCAATGTCTACCGCAGCAAGGCCCAGCCCTGCGGTGGCGAGGCGTCGTTGGAACTGCCGCCGCTCAACAGCGACACACGCCTTGCGCTGTCGCCAGAGGGCACCCGCGACCTGCAACAGGCCATGACCCGCGCCGCCTACCCCATGGTCAGCGTCCAGGCCATCAGCCTGTCGGGGCCACGCGACGCACGCGCCGCCATGC > NC_002947/4041967‑4042257 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |