New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 134103326 (1.180)3 (0.140) 3/246 NT 11.8% coding (242/870 nt) PP_1165 hypothetical protein
?NC_002947 = 1341066 20 (0.940)coding (209/870 nt) PP_1165 hypothetical protein

CACTGTCTAGCGTCAGCCGTGCTCGCTGTTCACTGTGGTGCTCCACCTGCCAGGCCTGCTGCCAGGCACTGCCATGGATCGGGTAAGGGTCATGCCCGGTATTGGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1340926‑1341033
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggtgGCTTTGCCCGACCCGAGGGGTGGCAGGCACTGGCACCCAATACCGG  <  NC_002947/1341066‑1341021
                                                                                                                                                          
CACTGTCTAGCGTCAGCCGTGCTCGCTGTTCACTGTGGTGCTCCACCTGCCAGGCCTGCTGCCAGGCACTGCCATGGATCGGGTAAGGGTCATGCCCGGTATTGGGTGGCTTTGCCCGACCCGAGGGGTGGCAGGCACTGGCACCCAATA      <  2:69858/150‑1
                   TGCTCGCTGTTCACTGTGGTGCTCCACCTGCCAGGCCTGCTGCCAGGCACTGCCATGGATCGGGTAAGGGTCATGCCCGGTATTGGGTGGCTTTGCCCGACCCGAGGGGCGGCAGGCACTGGCACCCAATACCGG  >  1:337890/1‑135
                   TGCTCGCTGTTCACTGTGGTGCTCCACCTGCCAGGCCTGCTGCCAGGCACTGCCATGGATCGGGTAAGGGTCATGCCCGGTATTGGGTGGCTTTGCCCGACCCGAGGGGCGGCAGGCACTGGCACCCAATACCGG  <  2:337890/135‑1
                                                                                                                                                          
CACTGTCTAGCGTCAGCCGTGCTCGCTGTTCACTGTGGTGCTCCACCTGCCAGGCCTGCTGCCAGGCACTGCCATGGATCGGGTAAGGGTCATGCCCGGTATTGGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1340926‑1341033
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggtgGCTTTGCCCGACCCGAGGGGTGGCAGGCACTGGCACCCAATACCGG  <  NC_002947/1341066‑1341021

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.