New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1341033	26 (1.180)	3 (0.140)	3/246	NT	11.8%	coding (242/870 nt)	PP_1165	hypothetical protein
	?	NC_002947	= 1341066	20 (0.940)					coding (209/870 nt)	PP_1165	hypothetical protein

TGCACATCCAGCGTGGCCCGGTAAGCAAACGGCACAGCACTGTCTAGCGTCAGCCGTGCTCGCTGTTCACTGTGGTGCTCCACCTGCCAGGCCTGCTGCCAGGCACTGCCATGGATCGGGTAAGGGTCATGCCCGGTATTGGGTGCCAGTGCCTGCCACCCCTCGGGTCGGGCAAAGCCACCCTCGCCAATGCGGTTGGACCAAGGCGCCAGTGGGTAGCAGGCGAGGCGTCGTGGCGTACCACTTTCAAGTGCGGCCAGGTCGGAATGGCGCAGCAGCGCTTGCCCGGTCG  >  NC_002947/1340889‑1341180                                                                                                                                                 |                                                                                                                                                    tGCACATCCAGCGTGGCCCGGTAAGCAAACGGCACAGCACTGTCTAGCGTCAGCCGTGCTCGCTGTTCACTGTGGTGCTCCACCTGCCAGGCCTGCTGCCAGGCACTGCCATGGATCGGGTAAGGGTCATGCCCGGTATTGGGTGCCAGt                                                                                                                                                <  2:390569/150‑1 (MQ=255)  gCACATCCAGCGTGGCCCGGTAAGCAAACGGCACAGCACTGTCTAGCGTCAGCCGTGCTCGCTGTTCACTGTGGTGCTCCACCTGCCAGGCCTGCTGCCAGGCACTGCCATGGATCGGGTAAGGGTCATGCCCGGTATTGGGTGCCAGtg                                                                                                                                               >  1:147358/1‑150 (MQ=255)       tCCAGCGTGGCCCGGTAAGCAAACGGCACAGCACTGTCTAGCGTCAGCCGTGCTCGCTGTTCACTGTGGTGCTCCACCTGCCAGGCCTGCTGCCAGGCACTGCCATGGATCGGGTAAGGGTCATGCCCGGTATTGGGTGCCAGtgcctgc                                                                                                                                          <  1:247718/150‑1 (MQ=255)         cAGCGTGGCCCGGTAAGCAAACGGCACAGCACTGTCTAGCGTCAGCCGTGCTCGCTGTTCACTGTGGTGCTCCACCTGCCAGGCCTGCTGCCAGGCACTGCCATGGATCGGGTAAGGGTCATGCCCGGTATTGGGTGCCAGTGCCTGCCa                                                                                                                                        >  2:318938/1‑150 (MQ=255)          aGCGTGGCCCGGTAAGCAAACGGCACAGCACTGTCTAGCGTCAGCCGTGCTCGCTGTTCACTGTGGTGCTCCACCTGCCAGGCCTGCTGCCAGGCACTGCCATGGATCGGGTAAGGGTCATGCCCGGTATTGGGTGCCAGtgc                                                                                                                                              <  2:42561/143‑1 (MQ=255)          aGCGTGGCCCGGTAAGCAAACGGCACAGCACTGTCTAGCGTCAGCCGTGCTCGCTGTTCACTGTGGTGCTCCACCTGCCAGGCCTGCTGCCAGGCACTGCCATGGATCGGGTAAGGGTCATGCCCGGTATTGGGTGCCAGtgc                                                                                                                                              >  1:42561/1‑143 (MQ=255)            cGTGGCCCGGTAAGCAAACGGCACAGCACTGTCTAGCGTCAGCCGTGCTCGCTGTTCACTGTGGTGCTCCACCTGCCAGGCCTGCTGCCAGGCACTGCCATGGATCGGGTAAGGGTCATGCCCGGTATTGGGTGCCAGTGCCTGCCAccc                                                                                                                                     <  1:278659/150‑1 (MQ=255)                 cccGGTAAGCAAACGGCACAGCACTGTCTAGCGTCACCCCTGCTCGCTGTTCACTGTGGTGCTCCACCTGCCAGGCCTGCTGCCAGGCACTGCCATGGATCGGGTAAGGGTCATGCCCGGTATTGTGTGCCAGTGCCTGCCACCCCtcgg                                                                                                                                >  1:295006/1‑150 (MQ=255)                      tAAGCAAACGGCACAGCACTGTCTAGCGTCAGCCGTGCTCGCTGTTCACTGTGGTGCTCCACCTGCCAGGCCTGCTGCCAGGCACTGCCATGGATCGGGTAAGGGTCATGCCCGGTATTGGGTGCCAGTGCCTGCCACCCCtcgggtcgg                                                                                                                           <  1:282880/150‑1 (MQ=255)                      tAAGCAAACGGCAAAGCACTGTCTCGCCTCAGCAGTGCTCGCTGTTCCCTTTCGTGCCCCACCTGCCAGGCCTGCTGCCAGGCACTGCCATGGATCGGGTAAGGGTCATGCCCGGTATTGGGTGCCAGTGCCTGCCACCCCtcgggtcgg                                                                                                                           <  2:251656/150‑1 (MQ=255)                         gCAAACGGCACAGCACTGTCTAGCGTCAGCCGTGCTCGCTGTTCACTGTGGTGCTCCACCTGCCAGGCCTGCTGCCAGGCACTGCCATGGATCGGGTAAGGGTCATGCCCGGTATTGGGTGCCAGTGCCTGCCACCCCtcgg                                                                                                                                <  2:107139/142‑1 (MQ=255)                         gCAAACGGCACAGCACTGTCTAGCGTCAGCCGTGCTCGCTGTTCACTGTGGTGCTCCACCTGCCAGGCCTGCTGCCAGGCACTGCCATGGATCGGGTAAGGGTCATGCCCGGTATTGGGTGCCAGTGCCTGCCACCCCtcgg                                                                                                                                >  1:107139/1‑142 (MQ=255)                           aaaCGGCACAGCACTGTCTAGCGTCAGCCGTGCTCGCTGTTCACTGTGGTGCTCCACCTGCCAGGCCTGCTGCCAGGCACTGCCATGGATCGGGTAAGGGTCATGCCCGGTATTGGGTGCCAGTGCCTGCCACCCCTCGGGTCGGGCaaa                                                                                                                      <  1:318938/150‑1 (MQ=255)                            aaCGGCACAGCACTGTCTAGCGTCAGCCGTGCTCGCTGTTCACTGTGGTGCTCCACCTGCCAGGCCTGCTGCCAGGCACTACCATGGATCGGGTAAGGGTCATGCCCGGTATTGGGTGCCAGTGCCTGCCAACCCTCGGGTGGGGCAAAg                                                                                                                     >  2:384622/1‑150 (MQ=255)                                      cACTGTCTAGCGTCAGCCGTGCTCGCTGTTCACTGTGGTGCTCCACCTGCCAGGCCTGCTGCCAGGCACTGCCATGGATCGGGTAAGGGTCATGCCCGGTATTGGGTGgctttgcccgacccgaggggtggcaggcactggcacccaata                                                                                                           <  2:69858‑M1/150‑43 (MQ=255)                                        cTGTCTAGCGTCAGCCGTGCTCGCTGTTCACTGTGGTGCTCCACCTGCCAGGCCTGCTGCCAGGCACTGCCATGGATCGGGTAAGGGTCATGCCCGGTATTGGGTGCCAGTGCCTGCCACCCCTCGGGTCGGGCAAAGCCACCCTCGCCa                                                                                                         <  2:147358/150‑1 (MQ=255)                                                cGTCAGCCGTGCTCGCTGTTCACTGTGGTGCTCCACCTGCCAGGCCTGCTGCCAGGCACTGCCATGGATCGGGTAAGGGTCATGCCCGGTATTGGGTGCCAGTGCCTGCCACCCCTCGGGTCGGGCAAAGCCACCCTCGCCAATGCGGtt                                                                                                 <  2:195515/150‑1 (MQ=255)                                                  tCAGCCGTGCTCGCTGTTCACTGTGGTGCTCCACCTGCCAGGCCTGCTGCCAGGCACTGCCATGGATCGGGTAAGGGTCATGCCCGGTATTGGGTGCCAGTGCCTGCCACCCCTCGGGTCGGGCAAAGCCACCCTCGCCAATGCGGTTgg                                                                                               >  1:417865/1‑150 (MQ=255)                                                         tGCTCGCTGTTCACTGTGGTGCTCCACCTGCCAGGCCTGCTGCCAGGCACTGCCATGGATCGGGTAAGGGTCATGCCCGGTATTGGGTGgctttgcccgacccgaggggcggcaggcactggcacccaataccgg                                                                                                       <  2:337890‑M1/135‑47 (MQ=255)                                                         tGCTCGCTGTTCACTGTGGTGCTCCACCTGCCAGGCCTGCTGCCAGGCACTGCCATGGATCGGGTAAGGGTCATGCCCGGTATTGGGTGgctttgcccgacccgaggggcggcaggcactggcacccaataccgg                                                                                                       >  1:337890‑M1/1‑89 (MQ=255)                                                            tCGCTGTTCACTGTGGTGCTCCACCTGCCAGGCCTGCTGCCAGGCACTGCCATGGATCGGGTAAGGGTCATGCCCGGTATTGGGTGCCAGTGCCTGCCACCCCTCGGGTCGGGCAAAGCCACCCTCGCCAATGCGGTTGGACCAAGgcgc                                                                                     >  1:332518/1‑150 (MQ=255)                                                              gCTGTTCACTGTGGTGCTCCACCTGCCAGGCCTGCTGCCAGGCACTGCCATGGATCGGGTAAGGGTCATGCCCGGTATTGTGTGCCAGTGCCTGCCACCCCTCGGGTCGGGCAAAGCCACCCTCGCCAATGCGGTTGGACCAAGGCGCCa                                                                                   <  2:295006/150‑1 (MQ=255)                                                                         gggtgCTCCACCTGCCAGGCCTGCTGCCCGGCACTGCCATGAATCGGGTAAGTGTCATGCCCGGTATTGGGTGCCAGTGCCTGCCACCCCTCGGGCCGGGCAAAGTCACCCTCGCCAATGCGGTTGGACCAAGGCGCCAGTGGGTAGCag                                                                        <  1:384622/149‑1 (MQ=255)                                                                                    cTGCCAGGCCTGCTGCCAGGCACTGCCATGGATCGGGTAAGGGTCATGCCCGGTATTGGGTGCCAGTGCCTGCCACCCCTCGGGTCGGGCAAAGCCACCCTCGCCAATGCGGTTGGACCAAGGCGCCAGTGGGTAGCAGGCGAGGcgtcg                                                             >  1:16176/1‑150 (MQ=255)                                                                                             ctgctgCCAGGCACTGCCATGGATCGGGTAAGGGTCATGCCCGGTATTGGGTGCCAGTGCCTGCCACCCCTCGGGTCGGGCAAAGCCACCCTCGCCAATGCGGTTGGACCAAGGCGCCAGTGGGTAGCAGGCGAGGCGTCGTGGCGTAcc                                                    >  2:310760/1‑150 (MQ=255)                                                                                                       gCACTGCCATGTATCGGGCAAGCGTCATGCCCGGTATTGGGTGCCAGTTCCTGCCACCCCTCGGGTCGGGCAAAGCCACCCTCGCCAATGCGGTTGGACCAAGGCGCCAGTGGGTAGCAGGCGAGGCGTCGTGGCGTACCACTTTCAAGt                                          <  2:131939/150‑1 (MQ=255)                                                                                                       gCACTGCCATGGATCGGGTAAGGGTCATGCCCGGTATTGGGTGCCAGTGCCTGCCACCCCTCGGGTCGGGCAAAGCCACCCTCGCCAATGCGGTTGGACCAAGGCGCCAGTGGGTAGCAGGCGAGGCGTCGTGGCGTACCACTTTCAAGt                                          >  1:519584/1‑150 (MQ=255)                                                                                                               aTGGATCGGGTAAGGGTCATGCCCGGTATTGGGTGCCAGTGCCTGCCACCCCTCGGGTCGGGCAAAGCCACCCTCGCCAATGCGGTTGGACCAAGGCGCCAGTGGGTAGCAGGCGAGGCGTCGTGGCGTACCACTTTCAAGTGCGGCCAg                                  <  2:56594/150‑1 (MQ=255)                                                                                                                       ggTAAGGGTCATGCCCGGTATTGGGTGCCAGTGCCTGCCACCCCGCGGGTCGGGCAAAGCCACCCTCGCCAATGCGGTTGGACCAAGGCGCCAGTGGGTAGCAGGCGAGGCGTCGTGGCGTACCACTTTCAAGTGCGGCCAGGTCGGAAt                          <  2:20494/150‑1 (MQ=255)                                                                                                                                     ccGGTATTGGGTGCCAGTGCCTGCCGCCCCTCGGGTCGGGCAAAGCcacccaataccgggcatgacccttacccgatccatggcagtgcctggcagcaggcctggcaggtggagcaccacagtgaacagcgagca                           <  2:337890‑M2/135‑90 (MQ=255)                                                                                                                                     ccGGTATTGGGTGCCAGTGCCTGCCGCCCCTCGGGTCGGGCAAAGCcacccaataccgggcatgacccttacccgatccatggcagtgcctggcagcaggcctggcaggtggagcaccacagtgaacagcgagca                           >  1:337890‑M2/1‑46 (MQ=255)                                                                                                                                         tATTGGGTGCCAGTGCCTGCCACCCCTCGGGTCGGGCAAAGCcacccaataccgggcatgacccttacccgatccatggcagtgcctggcagcaggcctggcaggtggagcaccacagtgaacagcgagcacggctgacgctagacagtg        <  2:69858‑M2/150‑109 (MQ=255)                                                                                                                                           ttGGGTGCCAGTGCCTGCCACCCCTCGGGTCGGGCAAAGCCACCCTCGCCAATGCGGTTGGACCAAGGCGCCAGTGGGTAGCAGGCGAGGCGTCGTGGCGTACCACTTTCAAGTGCGGCCAGGTCGGAATGGCGCAGCAGCGCTTGCCCg      >  1:450469/1‑150 (MQ=255)                                                                                                                                               gTGCCAGTGCCTGCCACCCCTCGGGTCGGGCAAAGCCACCCTCGCCAATGCGGTTGGACCAAGGCGCCAGTGGGTAGCAGGCGAGGCGTCGTGGCGTACCACTTTCAAGTGCGGCCAGGTCGGAATGGCGCAGCAGCGCTTGCCCGGTCg  >  1:216796/1‑150 (MQ=255)                                                                                                                                                 |                                                                                                                                                    TGCACATCCAGCGTGGCCCGGTAAGCAAACGGCACAGCACTGTCTAGCGTCAGCCGTGCTCGCTGTTCACTGTGGTGCTCCACCTGCCAGGCCTGCTGCCAGGCACTGCCATGGATCGGGTAAGGGTCATGCCCGGTATTGGGTGCCAGTGCCTGCCACCCCTCGGGTCGGGCAAAGCCACCCTCGCCAATGCGGTTGGACCAAGGCGCCAGTGGGTAGCAGGCGAGGCGTCGTGGCGTACCACTTTCAAGTGCGGCCAGGTCGGAATGGCGCAGCAGCGCTTGCCCGGTCG  >  NC_002947/1340889‑1341180

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.