New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 107836	25 (1.130)	4 (0.190)	4/242	NT	12.8%	coding (605/642 nt)	PP_5426	hypothetical protein
	?	NC_002947	= 107861	31 (1.490)					coding (580/642 nt)	PP_5426	hypothetical protein

TGATCGGCGGGTGGAGATTGGCCAGCAGGGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACGACGGCCTGCGCCGAACCACCGATGCACCTAGGCCTTGACAGGTATATCAGGCCGGCTGACCCAGCTCGACACCCAGTTGGCGCGACAGGCACGGCCAGC‑GCTTCCACGCCGCGCCAGTTGCCGGGCTGCTCAGCTTCTCTCGATAAGCCTCCACCGATTCAACGGCAAAGCTCTCATCATTAAGCATTTCGTCGACCGAGTGGTGCACCACCTCATCCAGCTGGTTGGC  >  NC_002947/107691‑107981                                                                                                                                                  |                                                                                                                                                   tGATCGGCGGGTGGAGATTGGCCAGCAGGGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACGACGGCCTGCGCCGAACCACCGATGCACCTAGGCCTTGACAGGTATATCAGGCCGGCTGACCCAGCTCGACACCCAGTTGGCGCGACAg                                                                                                                                                <  1:448958/150‑1 (MQ=255)                              gccggccCTTTCGCGGGTGAACCCGCTCCTACGACGGCCTGCGCCGAACCACCGATGCACCTAGGCCTTGACAGGTATATCAGGCCGGCTGACCCAGCTCGACACCCAGTTGGCGCGgcgtggaagcgctggccgtgcctgtcgcgccaa                                                                                                                   >  2:540397‑M1/1‑117 (MQ=255)                                     cTTTCGCGGGTGAACCCGCTCCTACGACGGCCTGCGCCGAACCACCGATGCACCTAGGCCTTGACAGGTATATCAGGCCGGCTGACCCAGCTCGACACCCAGTTGGCGCGACAGGC‑CCTACAGCTACTTCCACGCCGCGCCAGTTGCCgg                                                                                                           <  1:438246/150‑1 (MQ=38)                                         cgcgGGTGAACCCGCTCCTACGACGGCCTGCGCCGAACCACCGATGCACCTAGGCCTTGACAGGTATATCAGGCCGGCTGACCCAGCTCGACACCCAGTTGGCGCGgcgtggaagcgctggccgtgcctgtcgcgccaactgggtgtcga                                                                                                        <  1:540397‑M1/150‑45 (MQ=255)                                            gggTGAACCCGCTCCTACGACGGCCTGCGCCGAACCACCGATGCACCTAGGCCTTGACAGGTATATCAGGCCGGCTGACCCAGCTCGACACCCAGTTGGCGCGACAGGCACGGCCAGC‑GCTTCCACGCCGCGCCAGTTGCCGGGCTGCTc                                                                                                    >  1:471007/1‑150 (MQ=255)                                             ggTGAACCCGCTCCTACGACGGCCTGCGCCGAACCACCGATGCACCTAGGCCTTGACAGGTATATCAGGCCGGCTGACCCAGCTCGACACCCAGTTGGCGCGACAGGCACGGCCAGC‑GCTTCCACGCCGCGCCAGTTGCCGGGCTGCTCa                                                                                                   <  2:471007/150‑1 (MQ=255)                                               tGAACCCGCTCCTACGACGGCCTGCGCCGAACCACCGATGCACCTAGGCCTTGACAGGTATATCAGGCCGGCTGACCCAGCTCGACACCCAGTTGGCGCGACAGGCACGGCCAGC‑GCTTCCACGCCGCGCCAGTTGCCGGGCTGCTCAGc                                                                                                 <  2:392132/150‑1 (MQ=255)                                                   cccGCTTCTACGACGGCCTGCGCCGAACCACCGATGCACCTAGGCCTTGACAGGTATATCAGGCCGGCTGACCCAGCTCGACACCCAGTTGGCGCGACAGGCACGGCCAGC‑GCTTCCACGCCGCGCCAGTTGCCGGGCTGCTCAGCTtct                                                                                             >  2:386838/1‑150 (MQ=255)                                                     cGCTCCTACGACGGCCTGCGCCGAACCACCGATGCACCTAGGCCTTGACAGGTATATCAGGCCGGCTGACCCAGCTCGACCCCCAGTTGGCGCGACAGGCACGGCCAGC‑GCTTCCACGCCGCGCCAGTTGCCGGGCTGCTCAGCTtctct                                                                                           <  2:33503/150‑1 (MQ=255)                                                     cGCTCCTACGACGGCCTGCGCCGAACCACCGATGCACCTAGGCCTTGACAGGTATATCAGGCCGGCTGACCCAGCTCGACACCCAGTTGGCGCGgcgtggaagcgctggccgtgcctgtcgcgccaactgggt                                                                                                             >  1:160964‑M1/1‑94 (MQ=255)                                                     cGCTCCTACGACGGCCTGCGCCGAACCACCGATGCACCTAGGCCTTGACAGGTATATCAGGCCGGCTGACCCAGCTCGACACCCAGTTGGCGCGgcgtggaagcgctggccgtgcctgtcgcgccaactgggt                                                                                                             <  2:160964‑M1/133‑40 (MQ=255)                                                      gCTCCTACGACGGCCTGCGACGAACCACCGATGCACCTAGGCCTTGACAGGTAGATCAGGCCGGCTGACGCAGCTCGACACCTAGTTTGCGCGTGAGGCACGGCCAGC‑GTTTCGTCGCGGCGCCAGTTGCCGGTCTGCGCCGCTgctgtc                                                                                          >  2:119209/1‑150 (MQ=255)                                                        tCCTACGACGGCCTGCGCCGAACCACCGATGCACCTAGGCCTTGACAGGTATATCAGGCCGGCTGACCCAGCTCGACACCCAGTTGGCGCGACAGGCACGNCNAGC‑GCTNCCACGCCGCGCCNGTTGCCGGGCTGCTCAGCTTCTCTNGa                                                                                        <  1:402596/150‑1 (MQ=255)                                                        tCCTACGACGGCCTGCGCCGAACCACCGATGCACCTAGGCCTTGACAGGTATATCAGGCCGGCTGACCCAGCTCGACACCCAGTTGGCGCGACAGGCACGGCCAGC‑GCTTCCACGCCGCGCCAGTTGCCGGGCTGCTCAGCTTCTCTCGa                                                                                        >  1:163681/1‑150 (MQ=255)                                                                    cTGCGCCGAACCACCGATGCACCTAGGCCTTGACAGGTATATCAGGCCGGCTGACCCAGCTCGACACCCAGTTGGCGCGACAGGCACGGCCAGC‑GCTTCCACGCCGCGCCAGTTGCCGGGCTGCTCAGCTTCTCTCGATAAGCCTCCAcc                                                                            >  2:173979/1‑150 (MQ=255)                                                                      gcgcCGAACCACCGATGCACCTAGGCCTTGACAGGTATATCAGGCCGGCTGACCCAGCTCAACACCCAGTTGGCGCGACAGGCACGGCCAGC‑GCTTCCACGCCGCGCCAGTTGCCGGGCTGCTCAGCTTCTCCCGATCAGCCTCCCCCGa                                                                          >  2:40359/1‑150 (MQ=255)                                                                        gcCGAACCACCGATGCACCTAGGCCTTGACAGGTATATCAGGCCGGCTGACCCAGCTCGACACCCAGTTGGCGCGACAGGCACGGCCAGC‑GCTTCCACGCCGCGCCAGTTGCCGGGCTGCTCAGCTTCTCTCGATAAGCCTCCACCGAtt                                                                        >  2:506669/1‑150 (MQ=255)                                                                           gAACCACCGATGCACCTAGGCCTTGACAGGTATATCAGGCCGGCTGACCCAGCTCGACACCCAGTTGGCGCGACAGGCACGGCCAGC‑GCTTCCACGCCGCGCCAGTTGCCGGGCTGCTCCGCCTCTCTCGATAAGCCTCCACCGATTCaa                                                                     <  1:159140/150‑1 (MQ=255)                                                                            aaCCACCGATGCACCTAGGCCTTGACAGGTATATCAGGCCGGCTGACCCAGCTCGACACCCAGTTGGCGCGACAGGCACGGCCAGC‑GCTTCCACGCCGCGCCAGTTGCCGGGCTGCTCAGCTTCTCTCGATAAGCCTCCACCGATTCAAc                                                                    <  1:475834/150‑1 (MQ=255)                                                                                  cGATGCACCTAGGCCTTGACAGGTATATCAGGCCGGCTGACCCAGCTCGACACCCAGTTGGCGCGACAGGCACGGCCAGC‑GCTTCCACGCCGCGCCAGTTGCCGGGCTGCTCAGCTTCTCTCGATAAGCCTCCACCGATTCAACGGCaaa                                                              <  2:163681/150‑1 (MQ=255)                                                                                        aCCTAGGCCTTGACAGGTATATCAGGCCGGCTGACCCAGCTCGACACCCAGTTGGCGCGACAGGCACGGCCAGC‑GCTTCCACGCCGCGCCAGTTGCCGGGCTGCTCAGCTTCTCTCGATAAGCCTCCACCGATTCAACGGCAAAGCtctc                                                        >  1:43997/1‑150 (MQ=255)                                                                                                 ttGACAGGTATATCAGGCCGGCTGACCCAGCTCGACACCCAGTTGGCGCGACAGGCACGGCCAGC‑GCTTCCACGCCGCGCCAGTTGCCGGGCTGCTCAGCTTCTCTCGATAAGCCTCCACCGATTCAACGGCAAAGCTCTCATCATTAAg                                               >  1:526775/1‑150 (MQ=255)                                                                                                    aCAGGTATATCAGGCCGGCTGACCCAGCTCGACACCCAGTTGGCGCGACAGGCACGGCCAGC‑GCTTCCACGCCGCGCCAGTTGCCGGGCTGCTCAGCTTCTCTCGATAAGCCTCCACCGATTCAACGGCAAAGCTCTCATCATTAAGCAt                                            <  2:286583/150‑1 (MQ=255)                                                                                                           tatCAGGCCGGCTGACCCAGCTCGACACCCAGTTGGCGCGACAGGCACGGCCAGC‑GCTTCCACGCCGCGCCAGTTGCCGGGCTGCTCAGCTTCTCTCGATAAGCCTCCACCGATTCAACgg                                                                  <  2:136304/121‑1 (MQ=255)                                                                                                           tatCAGGCCGGCTGACCCAGCTCGACACCCAGTTGGCGCGACAGGCACGGCCAGC‑GCTTCCACGCCGCGCCAGTTGCCGGGCTGCTCAGCTTCTCTCGATAAGCCTCCACCGATTCAACgg                                                                  >  1:136304/1‑121 (MQ=255)                                                                                                            atCAGGCCGGCTGACCCAGCTCGACACCCAGTTGGCGCGACAGGCACGGCCAGC‑GCTTCCACGCCGCGCCAGTTGCCGGGCTGCTCAGCTTCTCTCGATAAGCCTCCACCGATTCAACGGCAAAGCTCTCATCATTAAGCATTTCGTCGa                                    <  2:128132/150‑1 (MQ=255)                                                                                                                      cTGACCCAGCTCGACACCCAGTTGGCGCGACAGGCACGGCCAGC‑GCTTCCACGCCGCGCCAGTTGCCGGGCTGCTCAGCTTCTCTCGATAAGCCTCCACCGATTCAACGGCAAAGCTCTCATCATTAAGCATTTCGTCGACCGAgtggtg                          <  1:173979/150‑1 (MQ=255)                                                                                                                               cTCGACACCCAGTTGGCGCGACAGGCACGGCCAGC‑GCTTCCACGCCGCGCCAGTTGCCGGGCTGCTCAGCTTCTCTCGATAAGCCTCCACCGATTCAACGGCAAAGCTCTCATCATTAAGCATTTCGTCGACCGAGTGGTGCACCACCTc                 >  2:432465/1‑150 (MQ=255)                                                                                                                                tCGACACCCAGTTGGCGCGACAGGCACGGCCAGC‑GCTTCCACGCcgcgccaactgggtgtcgagctgggtcagccggcctgatatacctgtcaaggcctaggtgcatcggtggttcggcgcaggccgtcgtaggagcgggttcacccgcg                <  1:540397‑M2/150‑107 (MQ=255)                                                                                                                                     acCCAGTTGGCGCGACAGGCACGGCCAGC‑GCTTCCACGCcgcgccaactgggtgtcgagctgggtcagccggcctgatatacctgtcaaggcctaggtgcatcggtggttcggcgcaggccgtcgtaggagcg                            <  2:160964‑M2/133‑95 (MQ=255)                                                                                                                                     acCCAGTTGGCGCGACAGGCACGGCCAGC‑GCTTCCACGCcgcgccaactgggtgtcgagctgggtcagccggcctgatatacctgtcaaggcctaggtgcatcggtggttcggcgcaggccgtcgtaggagcg                            >  1:160964‑M2/1‑39 (MQ=255)                                                                                                                                       ccAGTTGGCGCGACAGGCACGGCCAGC‑GCTTCCACGCCGCGCCAGTTGCCGGGCTGCTCAGCTTCTCTCGATACGCCTCCACCGATTCAACGGCAAAGCTCTCATCATTAAGCATTTCGTCGACCGAGTGGTGCACCACCTCATCCAGCt         <  1:386838/150‑1 (MQ=255)                                                                                                                                        cAGTTGGCGCGACAGGCACGGCCAGC‑GCTTCCACGCCGCGCCAGTTGCCGGGCTGCTCAGCTTCTCTCGATAAGCCTCCACCGATTCAACGGCAAAGCTCTCATCATTAAGCATTTCGTCGACCGAGTGGTGCACCACCTCATCCAGCTg        >  2:118367/1‑150 (MQ=255)                                                                                                                                           ttGGCGCGACAGGCACGGCCAGC‑GCTTCCACGCcgcgccaactgggtgtcgagctgggtcagccggcctgatatacctgtcaaggcctaggtgcatcggtggttcggcgcaggccgtcgtaggagcgggttcacccgcgaaagggccggc     >  2:540397‑M2/1‑33 (MQ=255)                                                                                                                                              gcgcGACAGGCACGGCCAGC‑GCTTCCACGCCGCGCCAGTTGCCGGGCTGCTCAGCTTCTCTCGATAAGCCTCCACCGATTCAACGGCAAAGCTCTCATCATTAAGCATTTCGTCGACCGAGTGGTGCACCACCTCATCCAGCTGGTTGGc  >  2:532724/1‑150 (MQ=255)                                                                                                                                                  |                                                                                                                                                   TGATCGGCGGGTGGAGATTGGCCAGCAGGGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACGACGGCCTGCGCCGAACCACCGATGCACCTAGGCCTTGACAGGTATATCAGGCCGGCTGACCCAGCTCGACACCCAGTTGGCGCGACAGGCACGGCCAGC‑GCTTCCACGCCGCGCCAGTTGCCGGGCTGCTCAGCTTCTCTCGATAAGCCTCCACCGATTCAACGGCAAAGCTCTCATCATTAAGCATTTCGTCGACCGAGTGGTGCACCACCTCATCCAGCTGGTTGGC  >  NC_002947/107691‑107981

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.