New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 107836	25 (1.130)	4 (0.190)	4/242	NT	12.8%	coding (605/642 nt)	PP_5426	hypothetical protein
	?	NC_002947	= 107861	31 (1.490)					coding (580/642 nt)	PP_5426	hypothetical protein

CTTTCGCGGGTGAACCCGCTCCTACGACGGCCTGCGCCGAACCACCGATGCACCTAGGCCTTGACAGGTATATCAGGCCGGCTGACCCAGCTCGACACCCAGTTGGCGCGACAGGCACGGCCAGC‑GCTTCCACGCCGCGCCAGTTGCCGGGCTGCTCAGCTTCTCTCGATAAGCCTCCACCGATTCAACGGCAAAGCTCTCATCATTAAGCATTTCGTCGACCGAGTGGTGCACCACCTCATCCAGCTGGTTGGCAAAGCTTTCGCCAATCAACTGGTGG  >  NC_002947/107727‑108006                                                                                                                                        |                                                                                                                                                  cTTTCGCGGGTGAACCCGCTCCTACGACGGCCTGCGCCGAACCACCGATGCACCTAGGCCTTGACAGGTATATCAGGCCGGCTGACCCAGCTCGACACCCAGTTGGCGCGACAGGC‑CCTACAGCTACTTCCACGCCGCGCCAGTTGCCgg                                                                                                                                    <  1:438246/150‑1 (MQ=38)        gggTGAACCCGCTCCTACGACGGCCTGCGCCGAACCACCGATGCACCTAGGCCTTGACAGGTATATCAGGCCGGCTGACCCAGCTCGACACCCAGTTGGCGCGACAGGCACGGCCAGC‑GCTTCCACGCCGCGCCAGTTGCCGGGCTGCTc                                                                                                                             >  1:471007/1‑150 (MQ=255)         ggTGAACCCGCTCCTACGACGGCCTGCGCCGAACCACCGATGCACCTAGGCCTTGACAGGTATATCAGGCCGGCTGACCCAGCTCGACACCCAGTTGGCGCGACAGGCACGGCCAGC‑GCTTCCACGCCGCGCCAGTTGCCGGGCTGCTCa                                                                                                                            <  2:471007/150‑1 (MQ=255)           tGAACCCGCTCCTACGACGGCCTGCGCCGAACCACCGATGCACCTAGGCCTTGACAGGTATATCAGGCCGGCTGACCCAGCTCGACACCCAGTTGGCGCGACAGGCACGGCCAGC‑GCTTCCACGCCGCGCCAGTTGCCGGGCTGCTCAGc                                                                                                                          <  2:392132/150‑1 (MQ=255)               cccGCTTCTACGACGGCCTGCGCCGAACCACCGATGCACCTAGGCCTTGACAGGTATATCAGGCCGGCTGACCCAGCTCGACACCCAGTTGGCGCGACAGGCACGGCCAGC‑GCTTCCACGCCGCGCCAGTTGCCGGGCTGCTCAGCTtct                                                                                                                      >  2:386838/1‑150 (MQ=255)                 cGCTCCTACGACGGCCTGCGCCGAACCACCGATGCACCTAGGCCTTGACAGGTATATCAGGCCGGCTGACCCAGCTCGACCCCCAGTTGGCGCGACAGGCACGGCCAGC‑GCTTCCACGCCGCGCCAGTTGCCGGGCTGCTCAGCTtctct                                                                                                                    <  2:33503/150‑1 (MQ=255)                  gCTCCTACGACGGCCTGCGACGAACCACCGATGCACCTAGGCCTTGACAGGTAGATCAGGCCGGCTGACGCAGCTCGACACCTAGTTTGCGCGTGAGGCACGGCCAGC‑GTTTCGTCGCGGCGCCAGTTGCCGGTCTGCGCCGCTgctgtc                                                                                                                   >  2:119209/1‑150 (MQ=255)                    tCCTACGACGGCCTGCGCCGAACCACCGATGCACCTAGGCCTTGACAGGTATATCAGGCCGGCTGACCCAGCTCGACACCCAGTTGGCGCGACAGGCACGNCNAGC‑GCTNCCACGCCGCGCCNGTTGCCGGGCTGCTCAGCTTCTCTNGa                                                                                                                 <  1:402596/150‑1 (MQ=255)                    tCCTACGACGGCCTGCGCCGAACCACCGATGCACCTAGGCCTTGACAGGTATATCAGGCCGGCTGACCCAGCTCGACACCCAGTTGGCGCGACAGGCACGGCCAGC‑GCTTCCACGCCGCGCCAGTTGCCGGGCTGCTCAGCTTCTCTCGa                                                                                                                 >  1:163681/1‑150 (MQ=255)                                cTGCGCCGAACCACCGATGCACCTAGGCCTTGACAGGTATATCAGGCCGGCTGACCCAGCTCGACACCCAGTTGGCGCGACAGGCACGGCCAGC‑GCTTCCACGCCGCGCCAGTTGCCGGGCTGCTCAGCTTCTCTCGATAAGCCTCCAcc                                                                                                     >  2:173979/1‑150 (MQ=255)                                  gcgcCGAACCACCGATGCACCTAGGCCTTGACAGGTATATCAGGCCGGCTGACCCAGCTCAACACCCAGTTGGCGCGACAGGCACGGCCAGC‑GCTTCCACGCCGCGCCAGTTGCCGGGCTGCTCAGCTTCTCCCGATCAGCCTCCCCCGa                                                                                                   >  2:40359/1‑150 (MQ=255)                                    gcCGAACCACCGATGCACCTAGGCCTTGACAGGTATATCAGGCCGGCTGACCCAGCTCGACACCCAGTTGGCGCGACAGGCACGGCCAGC‑GCTTCCACGCCGCGCCAGTTGCCGGGCTGCTCAGCTTCTCTCGATAAGCCTCCACCGAtt                                                                                                 >  2:506669/1‑150 (MQ=255)                                       gAACCACCGATGCACCTAGGCCTTGACAGGTATATCAGGCCGGCTGACCCAGCTCGACACCCAGTTGGCGCGACAGGCACGGCCAGC‑GCTTCCACGCCGCGCCAGTTGCCGGGCTGCTCCGCCTCTCTCGATAAGCCTCCACCGATTCaa                                                                                              <  1:159140/150‑1 (MQ=255)                                        aaCCACCGATGCACCTAGGCCTTGACAGGTATATCAGGCCGGCTGACCCAGCTCGACACCCAGTTGGCGCGACAGGCACGGCCAGC‑GCTTCCACGCCGCGCCAGTTGCCGGGCTGCTCAGCTTCTCTCGATAAGCCTCCACCGATTCAAc                                                                                             <  1:475834/150‑1 (MQ=255)                                              cGATGCACCTAGGCCTTGACAGGTATATCAGGCCGGCTGACCCAGCTCGACACCCAGTTGGCGCGACAGGCACGGCCAGC‑GCTTCCACGCCGCGCCAGTTGCCGGGCTGCTCAGCTTCTCTCGATAAGCCTCCACCGATTCAACGGCaaa                                                                                       <  2:163681/150‑1 (MQ=255)                                                    aCCTAGGCCTTGACAGGTATATCAGGCCGGCTGACCCAGCTCGACACCCAGTTGGCGCGACAGGCACGGCCAGC‑GCTTCCACGCCGCGCCAGTTGCCGGGCTGCTCAGCTTCTCTCGATAAGCCTCCACCGATTCAACGGCAAAGCtctc                                                                                 >  1:43997/1‑150 (MQ=255)                                                             ttGACAGGTATATCAGGCCGGCTGACCCAGCTCGACACCCAGTTGGCGCGACAGGCACGGCCAGC‑GCTTCCACGCCGCGCCAGTTGCCGGGCTGCTCAGCTTCTCTCGATAAGCCTCCACCGATTCAACGGCAAAGCTCTCATCATTAAg                                                                        >  1:526775/1‑150 (MQ=255)                                                                aCAGGTATATCAGGCCGGCTGACCCAGCTCGACACCCAGTTGGCGCGACAGGCACGGCCAGC‑GCTTCCACGCCGCGCCAGTTGCCGGGCTGCTCAGCTTCTCTCGATAAGCCTCCACCGATTCAACGGCAAAGCTCTCATCATTAAGCAt                                                                     <  2:286583/150‑1 (MQ=255)                                                                       tatCAGGCCGGCTGACCCAGCTCGACACCCAGTTGGCGCGACAGGCACGGCCAGC‑GCTTCCACGCCGCGCCAGTTGCCGGGCTGCTCAGCTTCTCTCGATAAGCCTCCACCGATTCAACgg                                                                                           >  1:136304/1‑121 (MQ=255)                                                                       tatCAGGCCGGCTGACCCAGCTCGACACCCAGTTGGCGCGACAGGCACGGCCAGC‑GCTTCCACGCCGCGCCAGTTGCCGGGCTGCTCAGCTTCTCTCGATAAGCCTCCACCGATTCAACgg                                                                                           <  2:136304/121‑1 (MQ=255)                                                                        atCAGGCCGGCTGACCCAGCTCGACACCCAGTTGGCGCGACAGGCACGGCCAGC‑GCTTCCACGCCGCGCCAGTTGCCGGGCTGCTCAGCTTCTCTCGATAAGCCTCCACCGATTCAACGGCAAAGCTCTCATCATTAAGCATTTCGTCGa                                                             <  2:128132/150‑1 (MQ=255)                                                                                  cTGACCCAGCTCGACACCCAGTTGGCGCGACAGGCACGGCCAGC‑GCTTCCACGCCGCGCCAGTTGCCGGGCTGCTCAGCTTCTCTCGATAAGCCTCCACCGATTCAACGGCAAAGCTCTCATCATTAAGCATTTCGTCGACCGAgtggtg                                                   <  1:173979/150‑1 (MQ=255)                                                                                           cTCGACACCCAGTTGGCGCGACAGGCACGGCCAGC‑GCTTCCACGCCGCGCCAGTTGCCGGGCTGCTCAGCTTCTCTCGATAAGCCTCCACCGATTCAACGGCAAAGCTCTCATCATTAAGCATTTCGTCGACCGAGTGGTGCACCACCTc                                          >  2:432465/1‑150 (MQ=255)                                                                                            tCGACACCCAGTTGGCGCGACAGGCACGGCCAGC‑GCTTCCACGCcgcgccaactgggtgtcgagctgggtcagccggcctgatatacctgtcaaggcctaggtgcatcggtggttcggcgcaggccgtcgtaggagcgggttcacccgcg                                         <  1:540397‑M2/150‑107 (MQ=255)                                                                                                 acCCAGTTGGCGCGACAGGCACGGCCAGC‑GCTTCCACGCcgcgccaactgggtgtcgagctgggtcagccggcctgatatacctgtcaaggcctaggtgcatcggtggttcggcgcaggccgtcgtaggagcg                                                     <  2:160964‑M2/133‑95 (MQ=255)                                                                                                 acCCAGTTGGCGCGACAGGCACGGCCAGC‑GCTTCCACGCcgcgccaactgggtgtcgagctgggtcagccggcctgatatacctgtcaaggcctaggtgcatcggtggttcggcgcaggccgtcgtaggagcg                                                     >  1:160964‑M2/1‑39 (MQ=255)                                                                                                   ccAGTTGGCGCGACAGGCACGGCCAGC‑GCTTCCACGCCGCGCCAGTTGCCGGGCTGCTCAGCTTCTCTCGATACGCCTCCACCGATTCAACGGCAAAGCTCTCATCATTAAGCATTTCGTCGACCGAGTGGTGCACCACCTCATCCAGCt                                  <  1:386838/150‑1 (MQ=255)                                                                                                    cAGTTGGCGCGACAGGCACGGCCAGC‑GCTTCCACGCCGCGCCAGTTGCCGGGCTGCTCAGCTTCTCTCGATAAGCCTCCACCGATTCAACGGCAAAGCTCTCATCATTAAGCATTTCGTCGACCGAGTGGTGCACCACCTCATCCAGCTg                                 >  2:118367/1‑150 (MQ=255)                                                                                                       ttGGCGCGACAGGCACGGCCAGC‑GCTTCCACGCcgcgccaactgggtgtcgagctgggtcagccggcctgatatacctgtcaaggcctaggtgcatcggtggttcggcgcaggccgtcgtaggagcgggttcacccgcgaaagggccggc                              >  2:540397‑M2/1‑33 (MQ=255)                                                                                                          gcgcGACAGGCACGGCCAGC‑GCTTCCACGCCGCGCCAGTTGCCGGGCTGCTCAGCTTCTCTCGATAAGCCTCCACCGATTCAACGGCAAAGCTCTCATCATTAAGCATTTCGTCGACCGAGTGGTGCACCACCTCATCCAGCTGGTTGGc                           >  2:532724/1‑150 (MQ=255)                                                                                                                   gCACGGCCAGC‑GCTTCCACGCCGCGCCAGTTGCCGGGCTGCTCAGCTTCTCTCGATAAGCCTCCACCGATTCAACGGCAAAGCTCTCATCATTAAGCATTTCGTCGACCGAGTGGTGCACCACCTCATCCAGCTGGTTGGCAAAGCTTTc                  <  1:532724/150‑1 (MQ=255)                                                                                                                   gCACGGCCAGC‑GCTTCCACGCCGCGCAAGTTGCCGGGCTGCTCAGCTTCTCTCGATAAGCCTCCACCGATTCAACGGCAAAGCTCTCATCATTAAGCATTTCGTCGACCGAGTGGTGCACCACCTCATCCAGCTGGTTGGCAAAGCTTTc                  >  2:226679/1‑150 (MQ=255)                                                                                                                     aCGGCCAGC‑GCTTCCACGCCGCGCCAGTTGCCGGGCTGCTCAGCTTCTCTCGATAAGCCTCCACCGATTCAACGGCAAAGCTCTCATCATTAAGCATTTCGTCGACCGAGTGGTGCACCACCTCATCCAGCTGGTTGGCAAAGCTTTCGc                <  1:118367/150‑1 (MQ=255)                                                                                                                               gcTTCCACGCCGCGCCAGTTGCCGGGCTGCTCAGCTTCTCTCGATAAGCCTCCACCGATTCAACGGCAAAGCTCTCATCATTAAGCATTtcgt                                                                <  2:169324/93‑1 (MQ=255)                                                                                                                               gcTTCCACGCCGCGCCAGTTGCCGGGCTGCTCAGCTTCTCTCGATAAGCCTCCACCGATTCAACGGCAAAGCTCTCATCATTAAGCATTtcgt                                                                >  1:169324/1‑93 (MQ=255)                                                                                                                                    cACGCCGCGCCAGTTGCCGGGCTGCTCAGCTTCTCTCGATAAGCCTCCACCGATTCAACGGCAAAGCTCTCATCATTAAGCATTTCGTCGACCGAGTGTTGCACCACCTCATCCAGCTGGTTGGCAAAGCTTTCGCCAATCAACtggtgg  <  1:40359/150‑1 (MQ=255)                                                                                                                                        |                                                                                                                                                  CTTTCGCGGGTGAACCCGCTCCTACGACGGCCTGCGCCGAACCACCGATGCACCTAGGCCTTGACAGGTATATCAGGCCGGCTGACCCAGCTCGACACCCAGTTGGCGCGACAGGCACGGCCAGC‑GCTTCCACGCCGCGCCAGTTGCCGGGCTGCTCAGCTTCTCTCGATAAGCCTCCACCGATTCAACGGCAAAGCTCTCATCATTAAGCATTTCGTCGACCGAGTGGTGCACCACCTCATCCAGCTGGTTGGCAAAGCTTTCGCCAATCAACTGGTGG  >  NC_002947/107727‑108006

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.