New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	422678 =	26 (1.180)	4 (0.190)	4/244	NT	13.6%	coding (1273/2787 nt)	PP_0348	hypothetical protein
	?	NC_002947	422721 =	26 (1.240)					coding (1230/2787 nt)	PP_0348	hypothetical protein

GTGCATGCGTGCACGGTTGACCTTGCTGTGCGCAGTCAGGCGCCATTTGCCTGCTCTGGAACTGATGAGTTGGGTGTGCAGGTACTTTGCGTAGCTGTCACCCACGTTCAGTTCCCGGACCATGTGCTTGACATACTGCGGCGTGAGCCCGGCGGGCATGGCTTTGCCGTGGGCATGGATCACCCGGGCAGTCAGCCAGTAGTCGGTATCGAACCACGGCAAGTTCTTGAGGGCGATCTCTTCGAGGGTGTTGATTTCCTCGACCATCTCCACCATCTCGTGGCCCACGCGT  >  NC_002947/422532‑422823                                                                                                                                                   |                                                                                                                                                  atcccttcgccctctcatcctatgtcccctatgcaggcatgccccggtgacctggggttatggtggagatggtcgaggaaatcaacaccctcgaagagatcgccctcaagaacttgccgtggttcgataccgactactggctgactGccc                                                                                                                                                >  2:158434‑M1/147‑150 (MQ=255)             aCGGTTGACCTTGCTGTGCGCAGTCAGGCGCCATTTGCCTGCTCTGGAACTGATGAGTTGGGTGTGCAGGTACTTTGCGTAGCTGTCACCCACGTTCAGTTCCCGGACCATGTGCTTGACATACTGCGGCGTGAGCCcggc                                                                                                                                             >  1:116154/1‑141 (MQ=255)             aCGGTTGACCTTGCTGTGCGCAGTCAGGCGCCATTTGCCTGCTCTGGAACTGATGAGTTGGGTGTGCAGGTACTTTGCGTAGCTGTCACCCACGTTCAGTTCCCGGACCATGTGCTTGACATACTGCGGCGTGAGCCcggc                                                                                                                                             <  2:116154/141‑1 (MQ=255)                     ccTTGCTGTGCGCAGTCAGGCGCCATTTGCCTGCTCTGGAACTGATGAGTTGGGTGTGCAGGTACTTTGCGTAGCTGTCACCCACGTTCAGTTCCCGGACCATGTGCTTGACATACTGCGGCGTGAGCCCGGCGGGCATGGCTTTGCCGt                                                                                                                            <  1:552837/150‑1 (MQ=255)                           tgtgCGCAGTCAGGCGCCATTTGCCTGCTCTGGAACTGATGAGTTGGGTGTGCAGGTACTTTGCGTAGCTGTCACCCACGTTCAGTTCCCGGACCATGTGCTTGACATACTGCGGCGTGAGCCCGGCGGGCATGGCTTTGCCGTGGGCAt                                                                                                                      <  2:323966/150‑1 (MQ=255)                               cgcAGTCAGGCGCCATTTGCCTGCTCTGGAACTGATGAGTTGGGTGTGCAGGTACTTTGCGTAGCTGTCACCCACGTTCAGTTCCCGGACCATGTGCTTGACATACTGCGGCGTGAGCCCGGCGGGCATGGCTTTGCCGTGGGCATGGAt                                                                                                                  <  2:501224/150‑1 (MQ=255)                               atgcgggcatgcgacgcgtgggccacgagatggtggagatggtcgaggaaatcaacaccctcgaagagatcgccctcaagaacttgccgtggttcgataccgactactggctgactGCCCGGCGGGCATGGCTTTGCCGTGGGCATGGAt                                                                                                                  <  2:534862‑M1/34‑1 (MQ=255)                                gcAGTCAGGCGCCATTTGCCTGCTCTGGAACTGATGAGTTGGGTGTGCAGGTACTTTGCGTAGCTGTCACCCACGTTCAGTTCCCGGACCATGTGCTTGACATACTGCGGCGTGAGCCCGGCGGGCATGGCTTTGCCGTGGGCATGGATc                                                                                                                 <  2:37601/150‑1 (MQ=255)                                gcAGTCAGGCGCCATTTGCCTGCTCTGGAACTGATGAGTTGGGTGTGCAGGTACTTTGCGTAGCTGTCACCCACGTTCAGTTCCCGGACCATGTGCTTGACATACTGCGGCGTGAGCCCGGCGGGCATGGCTTTGCCGTGGGCATGCATc                                                                                                                 >  2:270239/1‑150 (MQ=255)                                  aGTCAGGCGCCATTTGCCTGCTCTGGAACTGATGAGTTGGGTGTGCAGGTACTTTGCGTAGCTGTCACCCACGTTCAGTTCCCGGACCATGTGCTTGACATACTGCGGCGTGAGCCCGGCGGGCATGGCTTTGCCGTGGGCATGGATCAc                                                                                                               <  2:231352/150‑1 (MQ=255)                                      aGGCGCCATTTGCCTGCTCTGGAACTGATGAGTTGGGTGTGCAGGTACTTTGCGTAGCTGTCACCCACGTTCAGTTCCCGGACCATGTGCTTGACATACTGCGGCGTGAGCCCGGCGGGCATGGCTTTGCCGTGGGCATGGATCACCCgg                                                                                                           <  1:115173/150‑1 (MQ=255)                                        gcgcCATTTGCCTGCTCTGGAACTGATGAGTTGGGTGTGCAGGTACTTTGCGTAGCTGTCACCCACGTTCAGTTCCCGGACCATGTGCTTGACATACTGCGGCGTGAGCCCGGCGGGCATGGCTTTGCCGTGGGCATGGATCACCCg                                                                                                            >  2:284739/1‑147 (MQ=255)                                        gcgcCATTTGCCTGCTCTGGAACTGATGAGTTGGGTGTGCAGGTACTTTGCGTAGCTGTCACCCACGTTCAGTTCCCGGACCATGTGCTTGACATACTGCGGCGTGAGCCCGGCGGGCATGGCTTTGCCGTGGGCATGGATCACCCg                                                                                                            <  1:284739/147‑1 (MQ=255)                                         gcgacgcgtgggccacgagatggtggagatggtcgaggaaatcaacaccctcgaagagatcgccctcaagaacttgccgtggttcgataccgactactggctgactGCCCGGCGGGCATGGCTTTGCCGTGGGCATGGATCACCCGGGCa                                                                                                        >  1:534862‑M1/107‑150 (MQ=255)                                               tggCCTGCTCTGGAACTGATGCGTTGGGTGTGCACGTACTTTGCGTAGCTGTCACCCACGTTCAGTTCCCGGACCATGTGCTTGACATACTGCGGTGTGAGCCCGGCGGGCATGGCTTTGCCGTGGGCATGGATCACCCGGGCAGTCAGc                                                                                                  <  2:238300/148‑1 (MQ=255)                                                 gCCTGCTCTGGAACTGATGAGTTGGGTGTGCAGGTACTTTGCGTAGCTGTCACCCACGTTCAGTTCCCGGACCATGTGCTTGACATACTGCGGCGTGAGCCCGGCGGGCATGGCTTTGCCGTGGGCATGGATCACCCGGGCAGTCAGCCa                                                                                                <  1:458669/150‑1 (MQ=255)                                                       tctGGAACCGATGAGTTGGGTGTGCAGNTACTTTGCGTAGNTGTCACNCACGTTCAGTCCCCGGACCATGTGCTTGACATACTGCGGCGTGAGCCCGGCGGGCATGGCTTTGCCGTGGGCATGGATCACCCGGGCAGTCAGCCAGTAGTc                                                                                          >  1:486800/1‑150 (MQ=255)                                                                        gtcgaggaaatcaacaccctcgaagagatcgccctcaagaacttgccgtggttcgataccgactactggctgactGCCCGGCGGGCATGGCTTTGCCGTGGGCATGGATCACCCGGGCAGTc                                                                                                     >  2:559909‑M1/76‑122 (MQ=255)                                                                        gtcgaggaaatcaacaccctcgaagagatcgccctcaagaacttgccgtggttcgataccgactactggctgactGCCCGGCGGGCATGGCTTTGCCGTGGGCATGGATCACCCGGGCAGTc                                                                                                     <  1:559909‑M1/47‑1 (MQ=255)                                                                             tgCAGGTACTTTGCGTAGCTGTCACCCACGTTCAGTTCACGGACCATGTGCTTGACATACTGCGGCGTGAGCCCGGCGGGCATGGCTTTGCCGTGGGCATGGATCACCCGGGCAGTCAGCCAGTAGTCGGTATCGAACCACGGCAAGTTc                                                                    <  2:295796/150‑1 (MQ=255)                                                                               cAGGTACTTTGCGTAGCTGTCACCCACGTTCAGTTCCCGGACCATGTGCTTGACATACTGCGGCGTGAGCCCGGCGGGCATGGCTTTGCCGTGGGCATGGATCACCCGGGCAGTCAGCCAGTAGTCGGTATCGAACCACGGCAAGTTCtt                                                                  >  1:94167/1‑150 (MQ=255)                                                                                  gTACTTTGCGTAGCTGTCACCCACGTTCAGTTCCCGGACCATGTGCTTGACATACTGCGGCGTGAGCCCGGCGGGCATGGCTTTGCCGTGGGCATGGATc                                                                                                                 <  1:424077/100‑1 (MQ=255)                                                                                  gTACTTTGCGTAGCTGTCACCCACGTTCAGTTCCCGGACCATGTGCTTGACATACTGCGGCGTGAGCCCGGCGGGCATGGCTTTGCCGTGGGCATGGATc                                                                                                                 >  2:424077/1‑100 (MQ=255)                                                                                      tttGCGTAGCTGTCACCCACGTTCAGTTCCCGGACCATGTGCTTGACATACTGCGGCGTGAGCCCGGCGGGCATGGCTTTGCCGTGGGCATGGATCACCCGGGCAGTCAGCCAGTAGTCGGTATCGAACCACGGCAAGTTCTTGAGGGCg                                                           <  2:224410/150‑1 (MQ=255)                                                                                                 gTCACCCACGTTCAGTTCCCGGACCATGTGCTTGACATACTGCGGCGTGAGCCCGGCGGGCATGGCTTTGCCGTGGGCATGGATCACCCGGGCAGTCAGCCAGTAGTCGGTATCGAACCACGGCAAGTTCTTGAGGGCGATCTCTTCGAg                                                >  1:451736/1‑150 (MQ=255)                                                                                                 gTCACCCACGTTCAGTTCCCGGACCATGTGCTTGACATACTGCGGCGTGAGCCCGGCGGGCATGGCTTTGCCGTGGGCATGGATCACCCGGGCAGTCAGCCAGTAGTCGGTATCGAACCACGGCAAGTTCTTGAGGGCGATCTCTTCGAg                                                >  1:377596/1‑150 (MQ=255)                                                                                                    aCCCACGTTCAGTTCCCGGACCATGTGCTTGACATACTGCGGCGTGAGCCCGGCGGGCATGGCTTTGCCGTGGGCATGGATCACCCGGGCAGTCAGCCAGTAGTCGGTATCGAACCACGGCAAGTTCTTGAGGGCGATCTCTTCGAGGgt                                             <  2:553990/150‑1 (MQ=255)                                                                                                             cAGTTCCCGGACCATGTGCTTGACATACTGCGGCGTGAGCCCGGCGGGCATGGCTTTGCCGTGGGCATGGATCACCCGGGCAGTCATCCAGTAGTTGGTATCGAACCACGGCCAGTTCTTGAGGGCGATCTCTTCGAGGGTGTTGATTTc                                    >  2:275884/1‑150 (MQ=255)                                                                                                                ttCCCGGACCATGTGCTTGACATACTGCGGCGTGAGCCCGGCGGGCATGGCTTTGCCGTGGGCATGGATCACCCGGGCAGTCAGCCAGTAGTCGGTATCGAACCACGGCAAGTTCTTGAGGGCGATCTCTTCGAGGGTGTTGATTTCCTc                                 >  1:333693/1‑150 (MQ=255)                                                                                                                              gCTTGACATACTGCGGCGTGAGCCCGGCGGGCATGGCTTTGCCGTGGGCATGGATCACCCGGGCAGTCAGCCAGTAGTCGGTATCGAACCACGGCAAGTTCTTGAGGGCGATCTCTTCGAGGGTGTTGATTTCCTCGACCATCTccacca                   >  2:538406/1‑150 (MQ=255)                                                                                                                                ttGACATACTGCGGCGTGAGCCCGGCGGGCATGGCTTTGCCGTGGGCATGGATCACCCGGGCAGTCAGCCAGTAGTCGGTATCGAACCACGGCAAGTTCTTGAGGGCGATCTCTTCGAGGGTGTTGATTTCCTCGACCATCTCCACCAtc                 >  1:505186/1‑150 (MQ=255)                                                                                                                                               gttaGCCCGGCGGGCATGGCTTTGCCGTAGGCATGGATCACCCGGGCAGTCAGCCAGTAGTCGGTATCGAACTACGGCAAGTTCTTGAGGGCGATCTCTTCGTGGGTGTTGATTTCCTCGACCATCTCCACCATCTCGTGGCCCACGCGt  >  2:63092/4‑150 (MQ=255)                                                                                                                                               gTGAGCCCGGCGGGCATGGCTTTGCCGTGGGCATGGATCACCCGGGCAGTCAGCCAGTAGTCGGTATCGAACCACGGCAAGTTCTTGAGGGCGATCTCGTCGAGGGTGTTGATTTCCTCGACCATCTCCACCATCTCGTGGCCCACGCGt  <  2:79478/150‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                  GTGCATGCGTGCACGGTTGACCTTGCTGTGCGCAGTCAGGCGCCATTTGCCTGCTCTGGAACTGATGAGTTGGGTGTGCAGGTACTTTGCGTAGCTGTCACCCACGTTCAGTTCCCGGACCATGTGCTTGACATACTGCGGCGTGAGCCCGGCGGGCATGGCTTTGCCGTGGGCATGGATCACCCGGGCAGTCAGCCAGTAGTCGGTATCGAACCACGGCAAGTTCTTGAGGGCGATCTCTTCGAGGGTGTTGATTTCCTCGACCATCTCCACCATCTCGTGGCCCACGCGT  >  NC_002947/422532‑422823

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.