New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	422678 =	26 (1.180)	4 (0.190)	4/244	NT	13.6%	coding (1273/2787 nt)	PP_0348	hypothetical protein
	?	NC_002947	422721 =	26 (1.240)					coding (1230/2787 nt)	PP_0348	hypothetical protein

CGCCATTTGCCTGCTCTGGAACTGATGAGTTGGGTGTGCAGGTACTTTGCGTAGCTGTCACCCACGTTCAGTTCCCGGACCATGTGCTTGACATACTGCGGCGTGAGCCCGGCGGGCATGGCTTTGCCGTGGGCATGGATCACCCGGGCAGTCAGCCAGTAGTCGGTATCGAACCACGGCAAGTTCTTGAGGGCGATCTCTTCGAGGGTGTTGATTTCCTCGACCATCTCCACCAT‑CTCGTGGCCCACGCGTCGCATGCCTGCATAGGTGACATAGGATGAGAGGGCGAAGGGAT  >  NC_002947/422572‑422866                                                                                                                                                      |                                                                                                                                                   gcgacgcgtgggccacgagatggtggagatggtcgaggaaatcaacaccctcgaagagatcgccctcaagaacttgccgtggttcgataccgactactggctgactGCCCGGCGGGCATGGCTTTGCCGTGGGCATGGATCACCCGGGCa                                                                                                                                                    >  1:534862‑M1/107‑150 (MQ=255)       tggCCTGCTCTGGAACTGATGCGTTGGGTGTGCACGTACTTTGCGTAGCTGTCACCCACGTTCAGTTCCCGGACCATGTGCTTGACATACTGCGGTGTGAGCCCGGCGGGCATGGCTTTGCCGTGGGCATGGATCACCCGGGCAGTCAGc                                                                                                                                              <  2:238300/148‑1 (MQ=255)         gCCTGCTCTGGAACTGATGAGTTGGGTGTGCAGGTACTTTGCGTAGCTGTCACCCACGTTCAGTTCCCGGACCATGTGCTTGACATACTGCGGCGTGAGCCCGGCGGGCATGGCTTTGCCGTGGGCATGGATCACCCGGGCAGTCAGCCa                                                                                                                                            <  1:458669/150‑1 (MQ=255)               tctGGAACCGATGAGTTGGGTGTGCAGNTACTTTGCGTAGNTGTCACNCACGTTCAGTCCCCGGACCATGTGCTTGACATACTGCGGCGTGAGCCCGGCGGGCATGGCTTTGCCGTGGGCATGGATCACCCGGGCAGTCAGCCAGTAGTc                                                                                                                                      >  1:486800/1‑150 (MQ=255)                                gtcgaggaaatcaacaccctcgaagagatcgccctcaagaacttgccgtggttcgataccgactactggctgactGCCCGGCGGGCATGGCTTTGCCGTGGGCATGGATCACCCGGGCAGTc                                                                                                                                                 >  2:559909‑M1/76‑122 (MQ=255)                                gtcgaggaaatcaacaccctcgaagagatcgccctcaagaacttgccgtggttcgataccgactactggctgactGCCCGGCGGGCATGGCTTTGCCGTGGGCATGGATCACCCGGGCAGTc                                                                                                                                                 <  1:559909‑M1/47‑1 (MQ=255)                                     tgCAGGTACTTTGCGTAGCTGTCACCCACGTTCAGTTCACGGACCATGTGCTTGACATACTGCGGCGTGAGCCCGGCGGGCATGGCTTTGCCGTGGGCATGGATCACCCGGGCAGTCAGCCAGTAGTCGGTATCGAACCACGGCAAGTTc                                                                                                                <  2:295796/150‑1 (MQ=255)                                       cAGGTACTTTGCGTAGCTGTCACCCACGTTCAGTTCCCGGACCATGTGCTTGACATACTGCGGCGTGAGCCCGGCGGGCATGGCTTTGCCGTGGGCATGGATCACCCGGGCAGTCAGCCAGTAGTCGGTATCGAACCACGGCAAGTTCtt                                                                                                              >  1:94167/1‑150 (MQ=255)                                              tttGCGTAGCTGTCACCCACGTTCAGTTCCCGGACCATGTGCTTGACATACTGCGGCGTGAGCCCGGCGGGCATGGCTTTGCCGTGGGCATGGATCACCCGGGCAGTCAGCCAGTAGTCGGTATCGAACCACGGCAAGTTCTTGAGGGCg                                                                                                       <  2:224410/150‑1 (MQ=255)                                                         gTCACCCACGTTCAGTTCCCGGACCATGTGCTTGACATACTGCGGCGTGAGCCCGGCGGGCATGGCTTTGCCGTGGGCATGGATCACCCGGGCAGTCAGCCAGTAGTCGGTATCGAACCACGGCAAGTTCTTGAGGGCGATCTCTTCGAg                                                                                            >  1:377596/1‑150 (MQ=255)                                                         gTCACCCACGTTCAGTTCCCGGACCATGTGCTTGACATACTGCGGCGTGAGCCCGGCGGGCATGGCTTTGCCGTGGGCATGGATCACCCGGGCAGTCAGCCAGTAGTCGGTATCGAACCACGGCAAGTTCTTGAGGGCGATCTCTTCGAg                                                                                            >  1:451736/1‑150 (MQ=255)                                                            aCCCACGTTCAGTTCCCGGACCATGTGCTTGACATACTGCGGCGTGAGCCCGGCGGGCATGGCTTTGCCGTGGGCATGGATCACCCGGGCAGTCAGCCAGTAGTCGGTATCGAACCACGGCAAGTTCTTGAGGGCGATCTCTTCGAGGgt                                                                                         <  2:553990/150‑1 (MQ=255)                                                                     cAGTTCCCGGACCATGTGCTTGACATACTGCGGCGTGAGCCCGGCGGGCATGGCTTTGCCGTGGGCATGGATCACCCGGGCAGTCATCCAGTAGTTGGTATCGAACCACGGCCAGTTCTTGAGGGCGATCTCTTCGAGGGTGTTGATTTc                                                                                >  2:275884/1‑150 (MQ=255)                                                                        ttCCCGGACCATGTGCTTGACATACTGCGGCGTGAGCCCGGCGGGCATGGCTTTGCCGTGGGCATGGATCACCCGGGCAGTCAGCCAGTAGTCGGTATCGAACCACGGCAAGTTCTTGAGGGCGATCTCTTCGAGGGTGTTGATTTCCTc                                                                             >  1:333693/1‑150 (MQ=255)                                                                                      gCTTGACATACTGCGGCGTGAGCCCGGCGGGCATGGCTTTGCCGTGGGCATGGATCACCCGGGCAGTCAGCCAGTAGTCGGTATCGAACCACGGCAAGTTCTTGAGGGCGATCTCTTCGAGGGTGTTGATTTCCTCGACCATCTccacca                                                               >  2:538406/1‑150 (MQ=255)                                                                                        ttGACATACTGCGGCGTGAGCCCGGCGGGCATGGCTTTGCCGTGGGCATGGATCACCCGGGCAGTCAGCCAGTAGTCGGTATCGAACCACGGCAAGTTCTTGAGGGCGATCTCTTCGAGGGTGTTGATTTCCTCGACCATCTCCACCAt‑c                                                            >  1:505186/1‑150 (MQ=255)                                                                                                       gttaGCCCGGCGGGCATGGCTTTGCCGTAGGCATGGATCACCCGGGCAGTCAGCCAGTAGTCGGTATCGAACTACGGCAAGTTCTTGAGGGCGATCTCTTCGTGGGTGTTGATTTCCTCGACCATCTCCACCAT‑CTCGTGGCCCACGCGt                                             >  2:63092/4‑150 (MQ=255)                                                                                                       gactgcccgggtgatccatgcccacggcaaagccatgcccgccgggcAGTCAGCCAGTAGTCGGTATCGAACCACGGCAAGTTCTTGAGGGCGATCTCTTCGAGGGTGTTGATTTCCTCGAc                                                                          >  2:559909‑M2/48‑122 (MQ=255)                                                                                                       gactgcccgggtgatccatgcccacggcaaagccatgcccgccgggcAGTCAGCCAGTAGTCGGTATCGAACCACGGCAAGTTCTTGAGGGCGATCTCTTCGAGGGTGTTGATTTCCTCGAc                                                                          <  1:559909‑M2/75‑1 (MQ=255)                                                                                                       gTGAGCCCGGCGGGCATGGCTTTGCCGTGGGCATGGATCACCCGGGCAGTCAGCCAGTAGTCGGTATCGAACCACGGCAAGTTCTTGAGGGCGATCTCGTCGAGGGTGTTGATTTCCTCGACCATCTCCACCAT‑CTCGTGGCCCACGCGt                                             <  2:79478/150‑1 (MQ=255)                                                                                                          tgcccgggtgatccatgcccacggcaaagccatgcccgccgggcAGTCAGCCAGTAGTCGGTATCGAACCACGGCAAGTTCTTGAGGGCGATCTCTTCGAGGGTGTTGATTTCCTCGACCATCTCCACCAT‑CTCGTGGCCCACGCGTCGc                                          >  1:534862‑M2/45‑150 (MQ=255)                                                                                                                GCGGGCATGGCTTTGCCGTGGGCATGGATCACCCGGGCAGTCAGCCAGTAGTCGGTATCGAACCACGGCAAGTTCTTGAGGGCGATCTCTTCGAGGGTGTTGATTTCCTCGACCATCTCCACCAT‑CTCGTGGCCCACGCGTCGCATGCCt                                    >  2:505186‑M1/1‑150 (MQ=255)                                                                                                                GCGGGCATGGCTTTGCCGTGGGCATGGATCACCCGGGCAGTCAGCCAGTAGTCGGTATCGAACCACGGCAAGTTCTTGAGGGCGATCTCTTCGAGGGTGTTGATTTCCTCGACCATCTCCACCAT‑CTCGTGGCCCACGCGTCGCATGCCt                                    <  1:233665‑M1/150‑1 (MQ=255)                                                                                                                   ggCATGGCTTTGCCGTGGGCATGGATCACCCGGGCAGTCAGCCAGTAGTCGGTATCGAACCACGGCAAGTTCTTGAGGGCGATCTCTTCGAGGGTGTTGATTTCCTCGACCATCTCCACCAT‑CTCGTGGCCCACGCGTCGCATGCCTGCa                                 <  2:451736/150‑1 (MQ=255)                                                                                                                    atccatgcccacggcaaagccatgcccgccgggcAGTCAGCCAGTAGTCGGTATCGAACCACGGCAAGTTCTTGAGGGCGATCTCTTCGAGGGTGTTGATTTCCTCGACCATCTCCACCAT‑CTCGTGGCCCACGCGTCGCATGCCCGCAt                                <  2:534862‑M2/116‑1 (MQ=255)                                                                                                                     cATGGCTTTGCCGTGGGCATGGATCACCCGGGCAGTCAGCCAGTAGTCGGTATCGAACCACGGCAAGTTCTTGAGGGAGATCTCTTCGAGGGTGTTGATTTCATAGAAAAACACAACTAT‑CTCCTGGCCCACGCGTCGCATGCCTGCATa                               >  1:267484/1‑150 (MQ=255)                                                                                                                          cTTTGCCGTGGGCATGGATCACCCGGGCAGTCAGCCAGTAGTCGGTATCGAACCACGGCAAGTTCTTGAGGGCGATCTCTTCGAGGGTGTTGATTTCCTCGACCATCTCCACCAT‑CTCGTGGCCCACGCGTCGCATGCCTGCATAGGTGa                          <  1:538406/150‑1 (MQ=255)                                                                                                                           tttGCCGTGGGCATGGATCACCCGGGCAGTCAGCCAGTAGTCGGTATCGAACCACGGCAAGTTCTTGAGGGCGATCTCTTCGAGGGTGTTGATATCCTAAAACAGCTCCAACAT‑CTCGAGTCCCGGGCGTTCCATGCCTGCATAGGTGAc                         >  2:93298/1‑150 (MQ=255)                                                                                                                               ccGTGGGCATGGATCACCCGGGCAGTCAGCCAGTAGTCGGTATCGAACCACGGCAAGTTCTTGAGGGCGATCTCTTCGAGGGTGTTGATTTCCTCGACCATCTCCACCAT‑CTCGTGGCCCACGCGTCGCATGCCTGCATAGGTGACATAg                     <  1:93298/150‑1 (MQ=255)                                                                                                                                 gTGGGCATGGATCACCCGGGCAGTCAGCCAGTAGTCGGTATCGAACCACGGCAAGTTCTTGAGGGCGATCTCTTCGAGGGTGTTGATTTCCTCGACCATCTCCACCAT‑CTCGTGGCCCACGCGTCGCATGCCTGCATAGGTGACATAGGa                   <  2:94167/150‑1 (MQ=255)                                                                                                                                 gTGGGCATGGATCACCCGGGCAGTCAGCCAGTAGTCGGTATCGAACCACGGCAAGTTCTTGAGGGCGATCTCTTCGAGGGTGTTGATTTCCTCGACCATCTCCACCAT‑CTCGTGGCCCACGCGTCGCATGCCTGCATAGGTGACATAGGa                   >  2:411354/1‑150 (MQ=255)                                                                                                                                     gCATGGATCACCCGGGCAGTCAGCCAGTAGTCGGTATCGAACCACGGCAAGTTCTTGAGGGCGATCTCTTCGAGGGTGTTGATTTCCTCGACCATCTCCACCAT‑CTCGTGGCCCACGCGTc                                            >  2:504243/1‑121 (MQ=255)                                                                                                                                     gCATGGATCACCCGGGCAGTCAGCCAGTAGTCGGTATCGAACCACGGCAAGTTCTTGAGGGCGATCTCTTCGAGGGTGTTGATTTCCTCGACCATCTCCACCAT‑CTCGTGGCCCACGCGTc                                            <  1:504243/121‑1 (MQ=255)                                                                                                                                      cATGGATCACCCGGGCAGTCAGCCAGTAGTCGGTATCGAACCACGGCAAGTTCTTGAGGGCGATCTCTTCGAGGGTGTTGATTTCCTCGACCATCTCCACCAT‑CTCGTGGCCCACGCGTCGCATGCCTGCATAGGTGACATAGGATgaga              >  1:543171/1‑150 (MQ=255)                                                                                                                                          gATCACCCGGGCAGTCAGCCAGTAGTCGGTATCGAACCACGGCAAGTTCTTGAGGGCGATCTCTTCGAGGGTGTTGATTTCCTCGACCATCTCCACCAT‑CTCGTGGCCCACGCGTCGCATGCCTGCATAGGTGACATAGGATGAGAGGGc          <  1:343959/150‑1 (MQ=255)                                                                                                                                                  gggcAGTCAGCCAGTAGTCGGTATCGAACCACGGCAAGTTCTTGAGGGCGATCTCTTCGAGGGTGTTGATTTCCTCGACCATCTCCACCATAACCCCAGGTCAC‑CGGGGCATGCCTGCATAGGGGACATAGGATGAGAGGGCGAAGGGAt  >  2:158434‑M2/5‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                                   CGCCATTTGCCTGCTCTGGAACTGATGAGTTGGGTGTGCAGGTACTTTGCGTAGCTGTCACCCACGTTCAGTTCCCGGACCATGTGCTTGACATACTGCGGCGTGAGCCCGGCGGGCATGGCTTTGCCGTGGGCATGGATCACCCGGGCAGTCAGCCAGTAGTCGGTATCGAACCACGGCAAGTTCTTGAGGGCGATCTCTTCGAGGGTGTTGATTTCCTCGACCATCTCCACCAT‑CTCGTGGCCCACGCGTCGCATGCCTGCATAGGTGACATAGGATGAGAGGGCGAAGGGAT  >  NC_002947/422572‑422866

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.