| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2503705 | 14 (0.640) | 3 (0.150) | 3/230 | NT | 16.9% | intergenic (+21/‑212) | speB/PP_2197 | agmatinase/hypothetical protein |
| ? | NC_002947 | = 2503767 | 17 (0.860) | intergenic (+83/‑150) | speB/PP_2197 | agmatinase/hypothetical protein | |||||
GGCATGGACTTGGTGGAAGTGGCGCCAGCCTATGACCATGCCGATATCACCGCGTTGGCCGGGGCAACCCTGGCCATGGAGATGCTGTGCCTGTATGCGGCGCGGCACAAGGTGGACAACGGCCAGTAGATTTTGCGGCCATTCGCGGGCAAGCCCGCTCCCACACGTGTCTCACAGGGCCAGAAATCTGTGGGTGACCGTGGAGCGGGCGCGCCCGCGAATGGCTGCAAAGCAGCCCTCCGAGGCCCATACTGAAACATCAGGAATCATCTCCACCCGCATTCACACTTTTGCC > NC_002947/2503556‑2503850 | ggCATGGACTTGGTGGAAGGGGCGCCAGCCTATGACCATGCCGATATCCCCGCGTTGGCCGGGGCAACCCTGGCCATGGAGATGCTGTGCCGGTATGCGGCGCGGCACAAGGTGGACAACGGCCAGTAGATTTTGCGGCCATTCGCGGGC < 1:553989‑M1/150‑1 (MQ=255) tGGACTTGGTGGAAGTGGCGCCAGCCTATGACCATGCCGATATCACCGCGTTGGCCGGGGCAACCCTGGCCATGGAGATGCTGTGCCTGTATGCGGCGCGGCACAAGGTGGACAACGGCCAGTAGATTTTGCGGCCATTCGCGGGCAAGc < 1:119635/150‑1 (MQ=255) gcgcCAGCCTATGACCATGCCGATATCACCGCGTTGGCCGGGGCAACCCTGGCCATGGAGATGCTGTGCCTGTATGCGGCGCGGCACAAGGTGGACAACGGCCAGTAGATTTTGCGGCCATTCGCGGGCAAGCCCGCTCCCACACGTGtc > 1:479676/1‑150 (MQ=255) ccAGCCTATGACCATGCCGATATCACCGCGTTGGCCGGGGCAACCCTGGCCATGGAGATGCTGTGCCTGTATGCGGCGCGGCACAAGGTGGACAACGGCCAGTAGATTTTGCGGCCATTCGCGGGCAAGCCCGCTCCCACACGTGTCTca < 2:338578/150‑1 (MQ=255) cAGCCTATGACCATGCCGATATCACCGCGTTGGCCGGGGCAACCCTGGCCATGGAGATGCTGTGCCTGTATGCGGCGCGGCACAAGGTGGACAACGGCCAGTAGATTTTGCGGCCATTCGCGGGCAAGCCCGCTCCCACACGTGTCTcac < 1:418422/150‑1 (MQ=255) cTATGACCATGCCGATATCACCGCGTTGGCCGGGGCAACCCTGGCCATGGAGATGCTGTGCCTGTATGCGGCGCGGCACAAGGTGGACAACGGCCAGTAGATTTTGCGGCCATTCGCGGGCAAGCCCGCTCCCACACGTGTCTCACAggg > 1:437171/1‑150 (MQ=255) gCCGGGGCAACCCTGGCCATGGAGATGCTGTGCCTGTATGCGGCGCGGCACAAGGTGGACAACGGCCAGTAGATTTTGCGGCCATTCGCGGGCAAGCCCGCTCCCACACGTGTCTCACAGGGCCAGAAATCTGTGGGTGACCGTGGAGCg > 2:112034/1‑150 (MQ=255) cccTGGCCATGGAGATGCTGTGCCTGTATGCGGCGCGGCACAAGGTGGACAACGGCCAGTAGATTTTGCGGCCATTCGCGGGCgcgcccgctccacggtcacccacagatttctggccctgtgagacacgtgtgggagcgggcttgc > 1:136977‑M1/1‑83 (MQ=255) cccTGGCCATGGAGATGCTGTGCCTGTATGCGGCGCGGCACAAGGTGGACAACGGCCAGTAGATTTTGCGGCCATTCGCGGGCgcgcccgctccacggtcacccacagatttctggccctgtgagacacgtgtgggagcgggcttgc < 2:136977‑M1/147‑65 (MQ=255) gCCATGGAGATGCTGTGCCTGTATGCGGCGCGGCACAAGGTGGACAACGGCCAGTAGATTTTGCGGCCATTCGCGGGCgcgcccgctccacggtcacccacagatttctggccctgtgagacacgtgtgggagcgggcttgcccgcgaat < 2:82771‑M1/150‑73 (MQ=255) cATGGAGATGCTGTGCCTGTATGCGGCGTGGCACAAGGTGGACAACGGCCAGTAGATTTTGCGGCCATTCGCGGGCAAGCCCGCTCCCACACGTGTCTCACAGGGCCAGAAATCTGTGGGTGACCGTGGAGCGGGCGCgcccgcgaatgg < 1:152880‑M2/150‑13 (MQ=255) tgCCTGTATGCGGCGCGGCACAAGGTGGACAATGGCCAGTAGATTTTGCGGCCATTCGCGGGCAAGCCCGCTCCCACACGTGTCTCACAGGGCCAGAAATCTGTGGGTGACCGTGGAGCGGGCGCGCCCGCGAATGGCTGCAAAGCAGcc > 2:76424/1‑150 (MQ=255) tATGCGGCGCGGCACAAGGTGGACAACGGCCAGTAGATTTTGCGGCCATTCGCGGGCAAGCCCGCTCCCACACGTGTCTCACAGGGCCAGAAATCTGTGGGTGACCGTGGAGCGGGCGCGCCCGCGAATGGCTGCAAAGCAGCCCTCCGa > 2:358052/1‑150 (MQ=255) aTGCGGCGCGGCACAAGGTGGACAACGGCCAGTAGATTTTGCGGCCTTTCGCGGGCAAGCCCGCTGCCACACGTGTCTCACAGGGCCAGAAATCTGTGGGGGACCGTGGAGCGGGCGCGCCCGCGAATGGCTGCAAAGCAGCCCTCCGAg < 1:14285/150‑1 (MQ=255) acaAGGTGGACAACGGCCAGTAGATTTTGCGGCCATTCGCGGGCAAGCCCGCTCCCACACGTGTCTCACAGGGCCAGAAATCTGTGGGTGACCGTGGAGCGGGTGCGCTCGCGAATGGCTGCAAAGCAGCCCTCCGAGGCCCATACTGaa < 2:192860/150‑1 (MQ=255) ggCCAGTAGATTTTGCGGCCATTCGCGGGCAAGCCCGCTCCCACACGTGTCTCACAGGGCCAGAAATCTGTGGGTGACCGTGGAGCGGGCGCGCCCGCGAATGGCTGCAAAGGAGCCCTCCGAGGCCCATACTGAAACATCAg > 1:29297/1‑143 (MQ=255) ggCCAGTAGATTTTGCGGCCATTCGCGGGCAAGCCCGCTCCCACACGTGTCTCACAGGGCCAGAAATCTGTGGGTGACCGTGGAGCGGGCGCGCCCGCGAATGGCTGCAAAGCAGCCCTCCGAGGCCCATACTGAAACATCAg < 2:29297/143‑1 (MQ=255) ttGCGGCCATTCGCGGGCAAGCCCGCTCCCACACGTGTCTCACAGGGCCAGAAATCTGTGGGTGACCGTGGAGCGGGCGCGCACGCGAATGGCTGCAAAGCAGCCCTCCGAGGCCCATACTGAAACATCAGGAATCATCTCCACCCGCAt > 1:225639/1‑150 (MQ=255) ccATTCGCGGGCgcgcccgctccacggtcacccacagatttctggccctgtgagacacgtgtgggagcgggcttgcccgcgaatggccgcaaaatctactggccgttgtccaccttgtgccacgccgcatacaggcacagcatctccatg < 1:152880‑M1/150‑139 (MQ=255) cATTCGCGGGCAAGCCCGCTCCCACACGTGTCTCACAGGGCCAGAAATCTGTGGGTGACCGTGGAGCGGGCGCGCCCGCGAATGGCTGCAAAGCAGCCCTCCGAGGCCCATACTGAAACATCAGGAATCATCTCCACCCGCATTCACACt < 2:152880/150‑1 (MQ=255) aTTCGCGGGCAAGCCCGCTCCCACACGTGTCTCACAGGGCCAGAAATCTGTGGGTGACCGTGGAGCGGGCGCgcccgcgaatggccgcaaaatctactggccgttgtccaccttgtgccgcgccgcatacaggcacagcatctccatggc < 2:82771‑M2/150‑79 (MQ=255) ttCGCGGGCAAGCCCGCTCCCACACGTGTCTCACAGGGCCAGAAATCTGTGGGTGACCGTGGACCGGGCCCGCCTGTGAATGGCTGCAAAGCAGCCCTCCGAGGCCCATACTGACACATCAGGAATCATCTCCACCCGCATTCACACttt < 1:556146/150‑1 (MQ=255) gCAAGCCCGCTCCCACACGTGTCTCACAGGGCCAGAAATCTGTGGGTGACCGTGGAGCGGGCGCgcccgcgaatggccgcaaaatctactggccgttgtccaccttgtgccgcgccgcatacaggcacagcatctccatggccaggg < 2:136977‑M2/147‑84 (MQ=255) gCAAGCCCGCTCCCACACGTGTCTCACAGGGCCAGAAATCTGTGGGTGACCGTGGAGCGGGCGCgcccgcgaatggccgcaaaatctactggccgttgtccaccttgtgccgcgccgcatacaggcacagcatctccatggccaggg > 1:136977‑M2/1‑64 (MQ=255) | GGCATGGACTTGGTGGAAGTGGCGCCAGCCTATGACCATGCCGATATCACCGCGTTGGCCGGGGCAACCCTGGCCATGGAGATGCTGTGCCTGTATGCGGCGCGGCACAAGGTGGACAACGGCCAGTAGATTTTGCGGCCATTCGCGGGCAAGCCCGCTCCCACACGTGTCTCACAGGGCCAGAAATCTGTGGGTGACCGTGGAGCGGGCGCGCCCGCGAATGGCTGCAAAGCAGCCCTCCGAGGCCCATACTGAAACATCAGGAATCATCTCCACCCGCATTCACACTTTTGCC > NC_002947/2503556‑2503850 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |