New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 2503705 | 14 (0.640) | 3 (0.150) | 3/230 | NT | 16.9% | intergenic (+21/‑212) | speB/PP_2197 | agmatinase/hypothetical protein |
? | NC_002947 | = 2503767 | 17 (0.860) | intergenic (+83/‑150) | speB/PP_2197 | agmatinase/hypothetical protein |
CATGGAGATGCTGTGCCTGTATGCGGCGCGGCACAAGGTGGACAACGGCCAGTAGATTTTGCGGCCATTCGCGGGCAAGCCCGCTCCCACACGTGTCTCACAGGGCCAGAAATCTGTGGGTGACCGTGGAGCGGGCGCGCCCGCGAATGGCTGCAAAGCAGCCCTCCGAGGCCCATACTGAAACATCAGGAATCATCTCCACCCGCATTCACACTTTTGCCGCGAACCCCTCGCGCCTTAGGCTATCAAACCCACCAGGCGCGGCATTTTCGTA > NC_002947/2503630‑2503903 | cATGGAGATGCTGTGCCTGTATGCGGCGTGGCACAAGGTGGACAACGGCCAGTAGATTTTGCGGCCATTCGCGGGCAAGCCCGCTCCCACACGTGTCTCACAGGGCCAGAAATCTGTGGGTGACCGTGGAGCGGGCGCgcccgcgaatgg < 1:152880‑M2/150‑13 (MQ=255) tgCCTGTATGCGGCGCGGCACAAGGTGGACAATGGCCAGTAGATTTTGCGGCCATTCGCGGGCAAGCCCGCTCCCACACGTGTCTCACAGGGCCAGAAATCTGTGGGTGACCGTGGAGCGGGCGCGCCCGCGAATGGCTGCAAAGCAGcc > 2:76424/1‑150 (MQ=255) tATGCGGCGCGGCACAAGGTGGACAACGGCCAGTAGATTTTGCGGCCATTCGCGGGCAAGCCCGCTCCCACACGTGTCTCACAGGGCCAGAAATCTGTGGGTGACCGTGGAGCGGGCGCGCCCGCGAATGGCTGCAAAGCAGCCCTCCGa > 2:358052/1‑150 (MQ=255) aTGCGGCGCGGCACAAGGTGGACAACGGCCAGTAGATTTTGCGGCCTTTCGCGGGCAAGCCCGCTGCCACACGTGTCTCACAGGGCCAGAAATCTGTGGGGGACCGTGGAGCGGGCGCGCCCGCGAATGGCTGCAAAGCAGCCCTCCGAg < 1:14285/150‑1 (MQ=255) acaAGGTGGACAACGGCCAGTAGATTTTGCGGCCATTCGCGGGCAAGCCCGCTCCCACACGTGTCTCACAGGGCCAGAAATCTGTGGGTGACCGTGGAGCGGGTGCGCTCGCGAATGGCTGCAAAGCAGCCCTCCGAGGCCCATACTGaa < 2:192860/150‑1 (MQ=255) ggCCAGTAGATTTTGCGGCCATTCGCGGGCAAGCCCGCTCCCACACGTGTCTCACAGGGCCAGAAATCTGTGGGTGACCGTGGAGCGGGCGCGCCCGCGAATGGCTGCAAAGGAGCCCTCCGAGGCCCATACTGAAACATCAg > 1:29297/1‑143 (MQ=255) ggCCAGTAGATTTTGCGGCCATTCGCGGGCAAGCCCGCTCCCACACGTGTCTCACAGGGCCAGAAATCTGTGGGTGACCGTGGAGCGGGCGCGCCCGCGAATGGCTGCAAAGCAGCCCTCCGAGGCCCATACTGAAACATCAg < 2:29297/143‑1 (MQ=255) ttGCGGCCATTCGCGGGCAAGCCCGCTCCCACACGTGTCTCACAGGGCCAGAAATCTGTGGGTGACCGTGGAGCGGGCGCGCACGCGAATGGCTGCAAAGCAGCCCTCCGAGGCCCATACTGAAACATCAGGAATCATCTCCACCCGCAt > 1:225639/1‑150 (MQ=255) cATTCGCGGGCAAGCCCGCTCCCACACGTGTCTCACAGGGCCAGAAATCTGTGGGTGACCGTGGAGCGGGCGCGCCCGCGAATGGCTGCAAAGCAGCCCTCCGAGGCCCATACTGAAACATCAGGAATCATCTCCACCCGCATTCACACt < 2:152880/150‑1 (MQ=255) aTTCGCGGGCAAGCCCGCTCCCACACGTGTCTCACAGGGCCAGAAATCTGTGGGTGACCGTGGAGCGGGCGCgcccgcgaatggccgcaaaatctactggccgttgtccaccttgtgccgcgccgcatacaggcacagcatctccatggc < 2:82771‑M2/150‑79 (MQ=255) ttCGCGGGCAAGCCCGCTCCCACACGTGTCTCACAGGGCCAGAAATCTGTGGGTGACCGTGGACCGGGCCCGCCTGTGAATGGCTGCAAAGCAGCCCTCCGAGGCCCATACTGACACATCAGGAATCATCTCCACCCGCATTCACACttt < 1:556146/150‑1 (MQ=255) gCAAGCCCGCTCCCACACGTGTCTCACAGGGCCAGAAATCTGTGGGTGACCGTGGAGCGGGCGCgcccgcgaatggccgcaaaatctactggccgttgtccaccttgtgccgcgccgcatacaggcacagcatctccatggccaggg < 2:136977‑M2/147‑84 (MQ=255) gCAAGCCCGCTCCCACACGTGTCTCACAGGGCCAGAAATCTGTGGGTGACCGTGGAGCGGGCGCgcccgcgaatggccgcaaaatctactggccgttgtccaccttgtgccgcgccgcatacaggcacagcatctccatggccaggg > 1:136977‑M2/1‑64 (MQ=255) acacGTGTCTCACAGGGCCAGAAATCTGTGGGTGACCGTGGAGCGGGCGCGCCCGCGAATGGCTGCAAAGCAGCCCTCCGAGGCCCATACTGAAACATCAGGAATCATCTCCACCCGCATTCACACTTTTGCCGCGAACCCCTCGCGCCt > 1:444089/1‑150 (MQ=255) caGGGCCAGAAATCTGTGGGTGACCGTGGAGCGGGCGCGCCCGCGAATGGCTGCAAAGCAGCCCTCCGAGGCCCATACTGAAACATCAGGAATCATCTCCACCCGCATTCACACTTTTGCCGCGAACCCCTCGCGCCTTAGGCTATCaaa < 2:479676/150‑1 (MQ=255) caGGGCCAGAAATCTGTGGGTGAACGTGGAGCGGGCGCGCCCGCGAATGGCTGCAAAGCAGCCCTCCGAGGCCCATACTGAAACATCAGGAATCATCTCCACCCGAATTCACACTTTTGCCGCGAACCCCTCGCGCCTTAGGCTATCaaa < 1:358052/150‑1 (MQ=255) ccAGAAATCTGTGGGTGACCGTGGAGCGGGCGCGCCCGCGAATGGCTGCAAAGCAGCCCTCCGAGGCCCATACTGAAACATCAGGAATCATCTCCACCCGCATTCACACTTTTGCCGCGAACCCCTCGCGCCTTAGGCTATCAAACccac > 1:36783/1‑150 (MQ=255) gggTGACCGTGGAGCGGGCGCGCCCGCGAATGGCTGCAAAGCAGCCCTCCGAGGCCCATACTGAAACATCAGGAATCATCTCCACCCGCATTCACACTTGCTCCTCGAACCCCTCGCGCCTTAGGCTATCAAACCCACCAGGCGCGGCAt > 1:178050/1‑150 (MQ=255) ggTGACCGTGGAGCGGGCGCGCCCGCGAATGGCTGCAAAGCAGCCCTCCGAGGCCCATACTGAAACATCAGGAATCATCTCCACCCGCATTCACACTTTTGCCGCGAACCCCTCGCGCCTTAGGCTATCAAACCCACCAGGCGCGGCAtt > 2:370899/1‑150 (MQ=255) gACCGTGGAGCGGGCGCGCCCGCGAATGGCTGCAAAGCAGCCCTCCGAGGCCCATACTGAAACATCAGGAATCATCTCCACCCGCATTCACACTTTTGCCGCGAACCCCTCGCGCCTTAGGCTATCAAACCCACCAGGCGCGGCATTTTc < 2:437171/150‑1 (MQ=255) cGTGGAGCGGGCGCGCCCGCGAATGGCTGGAAAGCAGCCCGGCGAGGGCCATACTGGAACATCAGGAATCATCTCCACCCGCATTCACACTTTTGCCGCGAACCCCTCGCGCCTTAGGCTATCAACCCCACCAGGCGCGGCATTTTCGTa < 2:178050/150‑1 (MQ=255) | CATGGAGATGCTGTGCCTGTATGCGGCGCGGCACAAGGTGGACAACGGCCAGTAGATTTTGCGGCCATTCGCGGGCAAGCCCGCTCCCACACGTGTCTCACAGGGCCAGAAATCTGTGGGTGACCGTGGAGCGGGCGCGCCCGCGAATGGCTGCAAAGCAGCCCTCCGAGGCCCATACTGAAACATCAGGAATCATCTCCACCCGCATTCACACTTTTGCCGCGAACCCCTCGCGCCTTAGGCTATCAAACCCACCAGGCGCGGCATTTTCGTA > NC_002947/2503630‑2503903 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |