New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5988340 =	29 (1.320)	3 (0.140)	3/248	NT	10.2%	coding (1366/1788 nt)	kefB‑III	glutathione‑regulated potassium/H+ antiporter
	?	NC_002947	5988376 =	25 (1.170)					coding (1402/1788 nt)	kefB‑III	glutathione‑regulated potassium/H+ antiporter

CACCGCGGGTGGTGATCGTCGGCATGGGCCGCATGGGCCAGATCGTCGCGCGCATCCTGCGGGCACAGAAGATCCCGTTCATTGCCCTGGAAACCTCGGTGGACACCATCGAGATGACCCGCATGTTCGAACAGGTGCCGGTGTTCTACGGCGACCCGCTGCGCCCGGAGGTGTTGCACGCCGCCAAGGTGGGTGAAGCGGAGTATTTCATCATCACCATTGATGACCCTGAAGCCGCCATTCATACCGCCGCACGGGTGAAGCGTCTGTACCCTCACCTGAAGGTGCTGGCCCGGGCG  >  NC_002947/5988191‑5988489                                                                                                                                                      |                                                                                                                                                      acatccgccaatttgtgcacatgctggcggttacgcgcccgggccagcaccttcaggtgagggtacagacgcttcacccgtgcggcggtatgaatggcggcttcagggtcatcaatggtgatgatgaaatactccgcttcacccaccttg                                                                                                                                                       <  2:371666‑M1/1‑1 (MQ=255)  catccgccaatttgtgcacatgctggcggttacgcgcccgggccagcaccttcaggtgagggtacagacgcttcacccgtgcggcggtatgaatggcggcttcagggtcatcaatggtgatgatgaaatactccgcttcacccaccttgg                                                                                                                                                      <  1:395299‑M1/2‑1 (MQ=255)         gtggtgATCGTCGGCATGGGCCGCATGGGCCAGATCGTCGCGCGCATCCTGCGGGCACAGAAGATCCCGTTCATTGCCCTGGAAACCTCGGTGGACACCATCGAGATGACCCGCATGTTCGAACAGGTGCCGGTGTTCTACGGCGACCCg                                                                                                                                               >  2:215495/1‑150 (MQ=255)                 cgtcgGCATGGGCCGCATGGGCCAGATCGTCGCGCGCATCCTGCGGGCACAGAAGATCCCGTTCATTGCCCTGGAAACCTCGGTGGACACCATCGAGATGACCCGCATGTTCGAACAGGTGCCGGTGTTCTACGGCGACCCGCTGCGccc                                                                                                                                       <  1:215495/150‑1 (MQ=255)                      gcatgggccgcatgggccAGATCGTCGCGCGCATCCTGCGGGCACAGAAGATCCCGTTCATTGCCCTGGAAACCTCGGTGGACACCATCGAGATGACCCGCATGTTCGAACAGGTGCCGGTGTTCTACGGCGACCCGCTGCGCCCGGAgg                                                                                                                                  >  2:395299/1‑150 (MQ=255)                                 atgggccAGATCGTCGCGCGCATCCTGCGGGCACAGAAGATCCCGTTCATTGCCCTGGAAACCTCGGTGGACACCATCGAGATGACCCGCATGTTCGAACAGGTGCCGGTGTTCTACGGGGACCCGCTGTGTCCGGAGGTGTTGCAcgct                                                                                                                       >  2:32787/1‑149 (MQ=255)                                          aTCGTCGCGCGCATCCTGCGGGCACAGAAGATCCCGTTCATTGCCCTGGAAACCTCGGTGGACACCATCGAGATGACCCGCATGTTCGAACAGGTGCCGGTGTTCTACGGCGACCCGCTGCGCCCGGAGGTGTTGCACGCCGCCAAggtg                                                                                                              <  1:220185/150‑1 (MQ=255)                                           gccagcaccttcaggtgagggtacagacgcttcacccgtgcggcggtatgaatggcggcttcagggtcatcaatggtgatgatgaaatactccgcttcacccaccttGGCGACCCGCTGCGCCCGGAGGTGTTGCACGCCGCCAAggtgg                                                                                                             >  2:169720‑M1/108‑150 (MQ=255)                                                gcgcgcATCCTGCGGGCACAGAAGATCCCGTTCATTGCCCTGGAAACCTCGGTGGACACCATCGAGATGACCCGCATGTTCGAACAGGTGCCGGTGTTCTACGGCGACCCGCTGCGCCCGGAGGTGTTGCACGCCGCCAAGGTGGGTGaa                                                                                                        <  1:32787/150‑1 (MQ=255)                                                              ggCACAGAAGATCCCGTTCATTGCCCTGGAAACCTCGGTGGACACCATCGAGATGACCCGCATGTTCGAACAGGTGCCGGTGTTCTACGGCGACCCGCTGCGCCCGGAGGTGTTGCACGCCGCCAAGGTGGGTGAAGCGGAGTATTtcat                                                                                          >  2:523297/1‑150 (MQ=255)                                                                   agaagaTCCCGTTCATTGCCCTGGAAACCTCGGTGGACACCATCGAGATGACCCGCATGTTCGAACAGGTGCCGGTGTTCTACGGCGACCCGCTGCGCCCGGAGGTGTTGCACGCCGCCAAGGTGGGTGAAGCGGAGTATTtcatcatca                                                                                     >  1:299555/1‑150 (MQ=255)                                                                      agaTCCCGTTCATTGCCCTGGAAACCTCGGTGGACACCATCGAGATGACCCGCATGTTCGAACAGGTGCCGGTGTTCTACGGCGACCCGCTGCGCCCGGAGGTGTTGCACGCCGCCAAGGTGGGTGAAGCGGAGTATTTCATCATCACCa                                                                                  <  1:33529/150‑1 (MQ=255)                                                                      agaTCCCGTTCATTGCCCTGGAAACCTCGGTGGACACCATCGAGATGACCCGCATGTTCGAACAGGTGCCGGTGTTCTACGGCGACCCGCTGCGCCCGGAGGTGTTGCACGCCGCCAAGGTGGGTGAAGCGGAGTATTTCATCATCACCa                                                                                  <  2:256215/150‑1 (MQ=255)                                                                         tCCCGTTCATTGCCCTGGAAACCTCGGTGGACACCATCGAGATGACCCGCATGTTCGAACAGGTGCCGGTGTTCTACGGCGACCCg                                                                                                                                               >  1:373302/1‑86 (MQ=255)                                                                         tCCCGTTCATTGCCCTGGAAACCTCGGTGGACACCATCGAGATGACCCGCATGTTCGAACAGGTGCCGGTGTTCTACGGCGACCCg                                                                                                                                               <  2:373302/86‑1 (MQ=255)                                                                                     cccTGGAAACCTCGGTGGACACCATCGAGATGACCCGCATGTTCGAACAGGTGCCGGTGTTCTACGGCGACCCGCTGCGCCCGGAGGTGTTGCAcgccg                                                                                                                      <  2:391797/99‑1 (MQ=255)                                                                                     cccTGGAAACCTCGGTGGACACCATCGAGATGACCCGCATGTTCGAACAGGTGCCGGTGTTCTACGGCGACCCGCTGCGCCCGGAGGTGTTGCAcgccg                                                                                                                      >  1:391797/1‑99 (MQ=255)                                                                                        tGGAAACCTCGCGGTACACCATAGAGATGACCCGCATTTTCGAACAGGTGCCGGTGTTCTACGTCGACCCGCTGCGCCCGGAGGTGTTGCACGCCGCCAAGGTGGGTGAAGCGGAGTATTTCATCATCACCATTGATGACCCTGAAgccg                                                                <  2:70803/150‑1 (MQ=255)                                                                                          gAAACCTCGGTGGACACAATCGAGATGACGCGCATGTTCTAACAGTTGCCGGTGTTCTACGGCGACCCGCTGCGCCCGGAGGTGTTGCACGCCGCCAAGGTGGGTGAAGCGGAGTATTTCATCATCACCATTGATTACCCTGAAgccgcc                                                              <  2:429221/150‑1 (MQ=255)                                                                                              atggcggcttcagggtcatcaatggtgatgatgaaatactccgcttcacccaccttGGCGACCCGCTGCGCCCGGAGGTGTTGCACGCCGCCaa                                                                                                                  >  1:164744‑M1/57‑94 (MQ=255)                                                                                              atggcggcttcagggtcatcaatggtgatgatgaaatactccgcttcacccaccttGGCGACCCGCTGCGCCCGGAGGTGTTGCACGCCGCCaa                                                                                                                  <  2:164744‑M1/38‑1 (MQ=255)                                                                                                    tGGACACCATCGAGATGACCCGCATGTTCGAACAGGTGCCGGTGTTCTACGGCGACCCGCTGCGCCCGGAGGTGTTGCACGCCGCCAAggtgg                                                                                                             <  2:428434/93‑1 (MQ=255)                                                                                                    tGGACACCATCGAGATGACCCGCATGTTCGAACAGGTGCCGGTGTTCTACGGCGACCCGCTGCGCCCGGAGGTGTTGCACGCCGCCAAggtgg                                                                                                             >  1:428434/1‑93 (MQ=255)                                                                                                            aTCGAGATGACCCGCATGTTCGAACAGGTGCCGGTGTTCTACGGCGACCCGCTGCGCCCGGAGGTGTTGCAc                                                                                                                          >  2:203812/1‑72 (MQ=255)                                                                                                            aTCGAGATGACCCGCATGTTCGAACAGGTGCCGGTGTTCTACGGCGACCCGCTGCGCCCGGAGGTGTTGCAc                                                                                                                          <  1:203812/72‑1 (MQ=255)                                                                                                                       ccGCATGTTCGAACAGGTGCCGGTGTTCTACGGCGACCCGCt                                                                                                                                             <  2:553642/42‑1 (MQ=255)                                                                                                                       ccGCATGTTCGAACAGGTGCCGGTGTTCTACGGCGACCCGCt                                                                                                                                             >  1:553642/1‑42 (MQ=255)                                                                                                                       ccGCATGTTCGAACAGGTGCCGGTGTTCTACGGCGACCCGCTGCGCCCGGAGGTGTTGCACGCCGCCAAGGTGGGTGAAGCGGAGTATTTCATCATCACCATTGATGACCCTGAAGCCGCCATTCATACCGCCGCACGGGTGAAGCGTCt                                 >  2:338551/1‑150 (MQ=255)                                                                                                                       ccGCATGTTCGAACAGGTGCCGGTGTTCTACGGCGACCCGCTGCGCCCGGAGGTGTTACACGCCGCCAAGGTGGGTGAAGCGGAGTATTTCATCATCACCATTGATGACCCTGAAGCCGCCATTCATACCGCCGCACGGGTGAAGCGTCt                                 >  1:371666/1‑150 (MQ=255)                                                                                                                            tGTTCGAACAGGTGCCCGTGTTTCGCGGCGACCCGCTGCGCCCGGAGGTGTTGCACGCCGCCAAGGTGGGTGAAGCGGAGTATTTCATCATCACCATTGATGACCCTGAAGCCGCCATTCATACCGCCGCACGGGTGAAGCGTCTGTAcc                            <  2:411981/150‑1 (MQ=255)                                                                                                                              ttCGAACAGGTGCCGGTGTTCTACGGCGACCCGCTGCGCCCGGAGGTGTTGCACGCCGCCAAGGTGGGTGAAGCGGAGTATTTCATCATCACCATTGATGACCCTGAAGCCGCCATTCATACCGCCGCACGGGTGAAGCGTCTGTACCCt                          >  2:132621/1‑150 (MQ=255)                                                                                                                                           cGGTGTTCTACGGCGACCCGCTGCGCCCGGAGGTGTTGCACGACGCCAAGGTGGGTGAAGCGGAGTATTTCATCATCACCATTGATGACCCTGAAGCCGCCATTCATACCGCCGCACGGGTGAAGCGTCTGTACCCTCACCTGAAGGTGc             >  1:21636/1‑150 (MQ=255)                                                                                                                                              tgtTCTACGGCGACCCGCTGCGCCCGGAGGTGTTGCACGCCGCCAAGGTGGGTGAAGCGGAGTATTTCATCATCACCATTGATGACCCTGAAGCCGCCATTCATACCGCCGCACGGGTGAAGCGTCTGTACCCTCAcc                      <  1:7287/138‑1 (MQ=255)                                                                                                                                              tgtTCTACGGCGACCCGCTGCGCCCGGAGGTGTTGCACGCCGCCAAGGTGGGTGAAGCGGAGTATTTCATCATCACCATTGATGACCCTGAAGCCGCCATTCATACCGCCGCACGGGTGAAGCGTCTGTACCCTCAcc                      >  2:7287/1‑138 (MQ=255)                                                                                                                                                  cTACGGCGACCCGCTGCGCCCGGAGGTGTTGCACGCCACCAAGGTGGGTTAAGCGGAGTATTTCATCATCACCATTGATGACCCTGAAGCCGCCATTCATACCGCCGCACGGGTGAAGCGTCTTTACCCTCACCTGCAGGTGCTGGCCCg      >  1:533189/1‑150 (MQ=255)                                                                                                                                                   tACGGCGACCCGCTGCGCCCGGAGGTGTTGCACGCCGCCAAGGTGGGTGCAGCGAAACATGTCATCATCAGTTGTAAGGACGCGTAAGCCGCCATTCATACCGCCGCACGGGTGAAGCGTCTGTACCCTCACCTGAAGGTGCTTGCCCgg     >  1:69372/1‑150 (MQ=255)                                                                                                                                                   tACGGCGACCCGCTGCGCCCGGAGGTGTTGCACGCCGCCAAGGTGGGTGAAGCGGAGTATTTCATCATCACCATTGATGACCCTGAAGCCGCCATTCATACCGCCGCACGGGTGAAGCGTCTGTACCCTCACCTGAAGGTGCTGGCCCgg     >  1:135919/1‑150 (MQ=255)                                                                                                                                                      GGCGACCCGCTGCGCCCGGAGGTGTTGCACGCCGCCAAGGTGGGTGAAGCGGAGTATTTCATCATCACCATTGATGACCCTGAAGCCGCCATTCATACCGCCGCACGGGTGAAGCGTCTGTACCCTCACCTGAAGGTGCTGGCCCGGgcg  <  2:466088‑M1/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                      CACCGCGGGTGGTGATCGTCGGCATGGGCCGCATGGGCCAGATCGTCGCGCGCATCCTGCGGGCACAGAAGATCCCGTTCATTGCCCTGGAAACCTCGGTGGACACCATCGAGATGACCCGCATGTTCGAACAGGTGCCGGTGTTCTACGGCGACCCGCTGCGCCCGGAGGTGTTGCACGCCGCCAAGGTGGGTGAAGCGGAGTATTTCATCATCACCATTGATGACCCTGAAGCCGCCATTCATACCGCCGCACGGGTGAAGCGTCTGTACCCTCACCTGAAGGTGCTGGCCCGGGCG  >  NC_002947/5988191‑5988489

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.