New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	938937 =	21 (0.950)	3 (0.140)	3/244	NT	14.0%	coding (6688/18933 nt)	PP_0806	surface adhesion protein
	?	NC_002947	938967 =	17 (0.810)					coding (6658/18933 nt)	PP_0806	surface adhesion protein

GATGACGGTGAAGGTGCCACCGGCACCTACCACCACACTGCCGACCAGTGTGCCGTTGGCATCGTGTACTTCCACACGGCTGCCCGTCGGGGCTGTACCAGTGATGCTGGCGCCGTTCGCAGCCACCACCAGGTCGCTTGGGCTGGCTGGGGTCGTGGTTGCCGGGATTTCATATTGCAGGGCTTCAGAGGCGTTGCCGCTCGCATCGGTCTGCACCAGGCTCAATTGCTCGCCCGGTTGCGCGGCTGGGGTGAGGTCGACCAAGAAGGTTCCGTTGGCGCCGACTGTGGCGGT  >  NC_002947/938818‑939111                                                                                                                                                      |                                                                                                                                                 gATGACGGTGAAGGTGCCACCGGCACCTACCACCACACTGCCGACCAGTGTGCCGTTGGCATCGTGTACTTCCACACGGCTGCCGGTCGGGGCTGTACCAGTGATGCTGGCGCCGTTCGCAGCCACCACCAGGTCGCTTGGGctggctgg                                                                                                                                                  >  1:305817/1‑150 (MQ=255)  aTGACGGTGAAGGTGCCACCGGCACCTACCACCACACTGCCGACCAGTGTGCCGTTGGCATCGTGTACTTCCACACGGCTGCCCGTCGGGGCTGTACCAGTGATGCTGGCGCCGTTCGCAGCCACCACCAGGTCGCTTGGGCTGGCTggg                                                                                                                                                 >  1:495833/1‑150 (MQ=255)       ggTGAAGGTGCCACCGGCACCTACCACCACACTGCCGACCAGTGTGCCGTTGGCATCGTGTACTTCCACACGGCTGCCCGTCGGGGCTGTACCAGTGATGCTGGCGCCGTTCGCAGCCACCACCAGGTCGCTTGGGCTGGCTGGGGTCGt                                                                                                                                            <  1:306236/150‑1 (MQ=255)        gtcgacctcaccccagccgcgcaaccgggcgagcaattgagcctggtgcagaccgatgcgagcggcaacgcctctgaagccctgcaatatgaaatcccggcaaccacgacccCAGCCACCACCAGGTCGCTTGGGCTGGCTGGGGTCGTg                                                                                                                                           >  1:350899‑M1/113‑150 (MQ=255)        gTGAAGGTGCCACCGGCACCTACCACCACACTGCCGACCAGTGTGCCGTTGGCATCGTGTACTTCCACACGGCTGCCCGTCGGGGCTGTACCAGTGATGCTGGCGCCGTTCGCAGCCCCCAACAGGTCGCTTGGGCTGGCTGGGGTCGTg                                                                                                                                           <  1:14874/150‑1 (MQ=255)                     cGGCACCTACCACCACACTGCCGACCAGTGTGCCGTTGGCATCGTGAACCTCCACACGGCTGCCCGTCGGGGCTGTACCAGTGATGCTGGCGCCGTTCGCAGCCACCACCAGGTCGCTTGGGCTGGCTGGGGTCGTGGTTGCCGGGAttt                                                                                                                              >  2:221898/1‑150 (MQ=255)                           cTACCACCACACTGCCGACCAGTGTGCCGTTGGCATCGTGTACTTCCACACGGCTGCCCGTCGGGGCTGTACCAGTGATGCTGGCGCCGTTCGCAGCCACCACCAGGTCGCTTGGGCTGGCTGGGGGCGTGGTTGCCGGGATTTCATAtt                                                                                                                        >  2:354167/1‑150 (MQ=255)                                 ccacACTGCCGACCAGTGTGCCGTTGGCATCGTGTACTTCCACACGGCTGCCCGTCGGGGCTGTACCAGTGATGCTGGCGCCGTTCGCAGCCACCACCAGGTCGCTTGGGCTGGCTGGGGTCGTGGTTGCCg                                                                                                                                    <  2:428483/132‑1 (MQ=255)                                 ccacACTGCCGACCAGTGTGCCGTTGGCATCGTGTACTTCCACACGGCTGCCCGTCGGGGCTGTACCAGTGATGCTGGCGCCGTTCGCAGCCACCACCAGGTCGCTTGGGCTGGCTGGGGTCGTGGTTGCCg                                                                                                                                    >  1:428483/1‑132 (MQ=255)                                                   tgCCGTTGGCATCGTGTACTTCCACACGGCTGCCCGTCGGGGCTGTACCAGTGATGCTGGCGCCGTTCGCAGCCACCACCAGGTCGCTTGGGCTGGCTGGGGTCGTGGTTGCCGGGATTTCATATTGCAGGGCTTCAGAGGCGTTGCCGc                                                                                                >  1:497176/1‑150 (MQ=255)                                                   tgCCGTTGGCATCGTGTACTTCCACACGGCTGCCCGTCGGGGCTGTACCAGTGATGCTGGCGCCGTTCGCAGCCACCACCAGGTCGCTTGGGCTGGCTGGGGTCGTGGTTGCCGGGATCTCATATTGCAGGGCTGCAGAGGCGTTGCCGc                                                                                                >  2:82783/1‑150 (MQ=255)                                                    gCCGTTGGCATCGTGTACTTCCACACGGCTGCCCGTCGGGGCTGTACCAGTGATGCTGGCGCCGTTCGCAGCCACCACCAGGTCGCTTGGGCTGGCTGGGGTCGTGGTTGCCGGGATTTCATATTGCAGGGCTTCAGAGGCGTTGCCGCt                                                                                               <  1:381078/150‑1 (MQ=255)                                                             cgatgcgagcggcaacgcctctgaagccctgcaatatgaaatcccggcaaccacgacccCAGCCACCACCAGGTCGCTTGGGCTGGCTgggg                                                                                                                                                <  2:277838‑M1/33‑1 (MQ=255)                                                             cgatgcgagcggcaacgcctctgaagccctgcaatatgaaatcccggcaaccacgacccCAGCCACCACCAGGTCGCTTGGGCTGGCTgggg                                                                                                                                                >  1:277838‑M1/60‑92 (MQ=255)                                                                            acGGCTGCCCGTCGGGGCTGTACCAGTGATGCTGGCGCCGTTCGCAGCCACCACCAGGTCGCTTGGGCTGGCTGGGGTCGTGGTTGCCGGGATTTCATATTGCAGGGCTTCAGAGGCGTTGCCGCTCGCATCGGTCTGCACCAGGCTCaa                                                                       >  2:472403/1‑150 (MQ=255)                                                                                 tGCCCGTCGGGGCTGTACCAGTGATGCTGGCGCCGTTCGCAGCCACCACCAGGTCGCTTGGGCTGGCTGGGGTCGTGGTTGCCGGGATTTCATATTGCAGGGCTTCAGAGGCGTTGCCGCTCGCATCGGTCTGCACCAGGCTCAATTGCt                                                                  >  2:275816/1‑150 (MQ=255)                                                                                     cGTCGGGGCTGTACCAGTGATGCTGGCGCCGTTCGCAGCCACCACCAGGTCGCTTGGGCTGGCTGGGGTCGTGGTTGCCGGGATTTCATATTGCAGGGCTTCAGAGGCGTTGCCGCTCGCATCGGTCTGCACCAGGCTCAATTGCTCGcc                                                              >  1:251413/1‑150 (MQ=255)                                                                                      gTCGGGGCTGTACCAGTGATGCTGGCGCCGTTCGCAGCCACCACCAGGTCGCTTGGGCTGGCTGGGGTCGTGGTTGCCGGGATTTCATATTGCAGGGCTTCAGAGGCGTTGCCGCTCGCATCGGTCTGCACCAGGCTCAATTGCTCGccc                                                             >  1:259105/1‑150 (MQ=255)                                                                                           ggCTGTACCAGTGATGCTGGCGCCGTTCGCAGCCACCACCAGGTCGCTTGGGCTGGCTGGGGTCGTGGTTGCCGGGATTTCATATTGCAGGGCTTCAGAGGCGTTGCCGCTCGCATCGGTCTGCACCAGGCTCAATTGCTCGCCCGGTTg                                                        >  1:280395/1‑150 (MQ=255)                                                                                                  ccAGTGATGCTGGCGCCGTTCGCAGCCACCACCAGGTCGCTTGGGCTGGCTGGGGTCGTGGTTGCCGGGATTTCATATTGCAGGGCTTCAGAGGCGTTGCCGCTCGCATCGGTCTGCACCAGGCTCAATTGCTCGCCCGGTTGCGCGGCt                                                 >  1:95300/1‑150 (MQ=255)                                                                                                    aGTGATGCTGGCGCCGTTCGCAGCCACCACCAGGTCGCTTGGGCTGGCTGGGGTCGTGGTTGCCGGGATTTCATATTGCAGGGCTTCAGAGGCGTTGCCGCTCGCATCGGTCTGCACCAGGCTCAATTGCTCGCCCGGTTGCGCGGCTgg                                               <  1:221898/150‑1 (MQ=255)                                                                                                           cTGGCGCCGTTCGCAGCCACCACCAGGTCGCTTGGGCTGGCTGGGGTATCAATTTCCGTTATTTCATATTGCAGGGCTTCAGAGGCGTTGCCGCTCGCATCGGTCTGCACCAGGCTCAATTGCTCGCCCGGTTGCGCGGCTGGGGTGAgg                                        <  1:34559/150‑1 (MQ=38)                                                                                                                cacgaccccagccagcccaagcgacctggtggtggctgGGGTCGTGGTTGCCGGGATTTCATATTGCAGGGCTTCAGAGGCGTTGCCGCTCGCATCGGTCTGCACCAGGCTCAATTGCTCGCCCGGTTGCGCGGCTGGGGTGAGGTCGAc                                   >  1:350899‑M2/39‑150 (MQ=255)                                                                                                                     ccccagccagcccaagcgacctggtggtggctgGGGTCGTGGTTGCCGGGATTTCATATTGCAGGGCTTCAGAGGCGTTGCCGCTCGCATCg                                                                                        <  2:277838‑M2/59‑1 (MQ=255)                                                                                                                     ccccagccagcccaagcgacctggtggtggctgGGGTCGTGGTTGCCGGGATTTCATATTGCAGGGCTTCAGAGGCGTTGCCGCTCGCATCg                                                                                        >  1:277838‑M2/34‑92 (MQ=255)                                                                                                                           CCACCACCAGGTCGCTTGGGCTGGCTGGGGTCGTGGTTGCCGGGATTTCATATTGCAGGGCTTCAGAGGCGTTGCCGCTCGCATCGGTCTGCACCAGGCTCAATTGCTCGCCCGGTTGCGCGGCTGGGGTGAGGTCGACCAAGAAGGTTc                        >  2:280395‑M1/1‑150 (MQ=255)                                                                                                                            CACCACCAGGTCGCTTGGGCTGGCTGGGGTCGTGGTTGCCGGGATTTCATATTGCAGGGCTTCAGAGGCGTTGCCGCTCGCATCGGTCTGCACCAGGCTCAATTGc                                                                   >  1:554985‑M1/1‑106 (MQ=255)                                                                                                                            CACCACCAGGTCGCTTGGGCTGGCTGGGGTCGTGGTTGCCGGGATTTCATATTGCAGGGCTTCAGAGGCGTTGCCGCTCGCATCGGTCTGCACCAGGCTCAATTGc                                                                   <  2:554985‑M1/106‑1 (MQ=255)                                                                                                                             ACCACCAGGTCGCTTGGGCTGGCTGGGGTCGTGGTTGCCGGGATTTCATATTGCAGGGCTTCAGAGGCGTTGCCGCTCGCATCGGTCTGCACCAGGCTCAATTGCTCGCCCGGTTGCGCGGCTGGGGTGAGGTCGACCAAGAAGGTTCCg                      <  1:291405‑M1/150‑1 (MQ=255)                                                                                                                                                 ggctgGGGTCGTGGTTGCCGGGATTTCATATTGCAGGGCTTCAGAGGCGTTGCCGCTCGCATCGGTCTGCACCAGGCTCAATTGCTCGCCCGGTTGCGCGGCTGGGGTGAGGTCGACCAAGAAGGTTCCGTTGGCGCCGACTGTGGCGGt  <  2:350899‑M2/145‑1 (MQ=255)                                                                                                                                                 ggctgGGGTCGTGGTTGCCGGGATTTCATATTGCAGGGCTTCAGAGGCGTTGCCGCTCGCATCGGTCTGCACCAGGCTCAATTGCTCGCCCGGTTGCGCGGCTGGGGTGAGGTCGACCAAGAAGGTTCCGTTGGCGCCGACTGTGGCGGt  <  2:497176‑M2/145‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                 GATGACGGTGAAGGTGCCACCGGCACCTACCACCACACTGCCGACCAGTGTGCCGTTGGCATCGTGTACTTCCACACGGCTGCCCGTCGGGGCTGTACCAGTGATGCTGGCGCCGTTCGCAGCCACCACCAGGTCGCTTGGGCTGGCTGGGGTCGTGGTTGCCGGGATTTCATATTGCAGGGCTTCAGAGGCGTTGCCGCTCGCATCGGTCTGCACCAGGCTCAATTGCTCGCCCGGTTGCGCGGCTGGGGTGAGGTCGACCAAGAAGGTTCCGTTGGCGCCGACTGTGGCGGT  >  NC_002947/938818‑939111

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.