New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1113981 =	16 (0.730)	3 (0.140)	3/246	NT	16.1%	coding (831/954 nt)	rlmF	ribosomal RNA large subunit methyltransferase F
	?	NC_002947	1114015 =	16 (0.760)					coding (797/954 nt)	rlmF	ribosomal RNA large subunit methyltransferase F

TGATTTACGCTGGGCGTGCCAGGCTTGGCGTGCGGCGTCGTCAAGGAAGCTCCAGGCGACCATGCGGCTCTGTTTCTGCCCCTGGCCCATCTCAATGATGCGTACGGCCTTGGCGCCGGACTTCTTCAACGCGGCTTCGATGCCCGGCAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTACCCGTTCGGCGTACTGCACGCTTTCGCCGATCAGCTGGGTGACAAAGCGGATTTCGCCACCCTCGCACCACAGTTCATTGTTCTGGCCACCGAA  >  NC_002947/1113867‑1114148                                                                                                                                                     |                                                                                                                                      actgtggtgcgagggtggcgaaatccgctttgtcacccagctgatcggcgaaagcgtgcagtacgccgaacgggtactttggttcaccagcctggtgtccaaggccagcaacctGCCGGACTTCTTCAACGCGGCTTCGATGCCCGGCAg                                                                                                                                      >  1:262852‑M1/115‑150 (MQ=255)                                           aaGGAAGCTCCAGGCGACCATGCGGCTCTGTTTCTGCCCCTGGCCCATCTCAATGATGCGTACGGCCTTGGCGCCGGACTTCTTCAACGCGGCTTCGATGCCCGGCAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTACCCg                                                                                            >  1:358101/1‑150 (MQ=255)                                                   tCCAGGCGACCATGCGGCTCTGTTTCTGCCCCTGGCCCATCTCAATGATGCGTACGGCCTTGGCGCCGGACTTCTTCAACGCGGCTTCGATTCCCGGCGGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTACCCGTTCGGCGt                                                                                    >  1:293449/1‑150 (MQ=255)                                                             cATGCGGCTCTGTTTCTGCCCCTGGCCCATCTCAATGATGCGTACGGCCTTGGCGCCGGACTTCTTCAACGCGGCTTCGATGCCCGGCAGGTTGCt                                                                                                                                <  2:49284/96‑1 (MQ=255)                                                             cATGCGGCTCTGTTTCTGCCCCTGGCCCATCTCAATGATGCGTACGGCCTTGGCGCCGGACTTCTTCAACGCGGCTTCGATGCCCGGCAGGTTGCt                                                                                                                                >  1:49284/1‑96 (MQ=255)                                                                   gCTCTGTTTCTGCCCCTGGCCCATCTCAATGATGCGTACGGCCTTGGCGCCGGACTTCTTCAACGCGGCTTCGATGCCCGGCAGGTTGCTGGCCTTGGACACCCGGGTGGTGAACCAAAGTACCCGTTCGGCGTACTGCACGCTTTCGcc                                                                    >  1:61454/1‑150 (MQ=255)                                                                                cccTGGCCCATCTCAATGATGCGTACGGCCTTGGCGCCGGACTTCTTCAACGCGGCTTCGATGCCCGGCAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTACCCGTTCGGCGTACTGCACGCTTTCGCCGATCAGCTgg                                                          >  1:427088/1‑147 (MQ=255)                                                                                cccTGGCCCATCTCAATGATGCGTACGGCCTTGGCGCCGGACTTCTTCAACGCGGCTTCGATGCCCGGCAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTACCCGTTCGGCGTACTGCACGCTTTCGCCGATCAGCTgg                                                          <  2:427088/147‑1 (MQ=255)                                                                                cccTGGCCCATCTCAATGATGCGTACGGCCTTGGCGCCGGACTTCTTCAACGCGGCTTCGATGCCCGGCAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTACCCGTTCGGCGTACTGCACGCTTTCGCCGATCAGCTGGGTg                                                       >  1:403488/1‑150 (MQ=255)                                                                                     gCCCATCTCAATGATGCGTACGGCCTTGGCGCCGGACTTCTTCAACGCGGCTTCGATGCCCGGCAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTACCCGTTCGGCGTACTGCACGCTTTCGCCGATCAGCGGGGTGACaaa                                                  >  1:223485/1‑150 (MQ=255)                                                                                                       tACGGCCTTGGCGCCGGACTTCTTCAACGCGGCTTCGATGCCCGGCAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTAccc                                                                                             <  1:273317/89‑1 (MQ=255)                                                                                                       tACGGCCTTGGCGCCGGACTTCTTCAACGCGGCTTCGATGCCCGGCAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTAccc                                                                                             >  2:273317/1‑89 (MQ=255)                                                                                                           gCCTTGGCGCCGGACTTCTTCAACGCGGCTTCGATGCCCGGCAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTACCCGTTCGGCGTACTGCACGCTTTCGCCGATCAGCTGGGTGACAAAGCGGATTTCGCCACCCTCGcac                            >  2:141842/1‑150 (MQ=255)                                                                                                           gCCTTGGCGCCGGACTTCTTCAACGCGGCTTCGATGCCCGGCAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTACCCGTTCGGCGTACTGCACGCTTTCGCCGATCAGCTGGGTGACAAAGCGGATTTCGACACCCTCGcac                            <  2:562880/150‑1 (MQ=255)                                                                                                                 ctgccgggcatcgaagccgcgttgaagaagtccggcAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTACCCGTTCGGCGTACTGCACGCTTTCGCCGATCAGCTGGGTGACAAAGCGGATTTCGCCACCCTCGCACCACAGt                      >  1:262852‑M2/37‑150 (MQ=255)                                                                                                                      gggcatcgaagccgcgttgaagaagtccggcAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTACCCGTTCGGCGTACTGCACGCTTTCGCCGATCAGCTGGGTGACAAAGCGGa                                             >  1:368249‑M2/32‑122 (MQ=255)                                                                                                                      gggcatcgaagccgcgttgaagaagtccggcAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTACCCGTTCGGCGTACTGCACGCTTTCGCCGATCAGCTGGGTGACAAAGCGGa                                             <  2:368249‑M2/91‑1 (MQ=255)                                                                                                                         attcttcACCGCGGCCTCGCTGCCCGGCAGGTTGCTGGCCTTGGACACCAGGCTTGTGAACCAAAGTACCCGTTCGGCGTACTGCACGCTTTCGCCGATCAGCTGGGTGACAAAGCGGATTTCGCCACCCTCGCACCACAGTTCATTGtt              <  2:403488/149‑1 (MQ=255)                                                                                                                             ttcAACGCGGCTTCGATGCCCGGCGGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTACCCGTTCGGCGTACTGCACGCTTTCGCCGATCAGCTGGGTGACAAAGCGGATTTCGCCACCCTCGCACCACAGTTCATTGTTCTgg          <  2:293449/150‑1 (MQ=255)                                                                                                                                     ggCTTCGATGCCCGGCAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTACCCGTTCGGCGTACTGCACGCTTTCGCCGATCAGCTGGGTGACAAAGCGGATTTCGCCACCCTCGCACCACAGTTCATTGTTCTGGCCACCGaa  >  2:326495/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                      TGATTTACGCTGGGCGTGCCAGGCTTGGCGTGCGGCGTCGTCAAGGAAGCTCCAGGCGACCATGCGGCTCTGTTTCTGCCCCTGGCCCATCTCAATGATGCGTACGGCCTTGGCGCCGGACTTCTTCAACGCGGCTTCGATGCCCGGCAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTACCCGTTCGGCGTACTGCACGCTTTCGCCGATCAGCTGGGTGACAAAGCGGATTTCGCCACCCTCGCACCACAGTTCATTGTTCTGGCCACCGAA  >  NC_002947/1113867‑1114148

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.