New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 3915818 | 32 (1.140) | 3 (0.110) | 3/230 | NT | 10.0% | coding (743/1176 nt) | PP_3455 | multidrug RND transporter membrane fusion protein |
? | NC_002947 | = 3915870 | 24 (0.910) | coding (795/1176 nt) | PP_3455 | multidrug RND transporter membrane fusion protein |
ACCCAGTCTACCCGCGAGCTCAACGCCCTGCGCCGCGCCCTGCGCGCCGGCGAATTGCAGCAGGTGGGCGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCACCAACCAGATCACCCTGCGCAGCGAGTTCCCCAACCCGGACCTCGACCTGCTGCCAGGCAGCTACGTGCGGGTACGCCTGGAGCAAGCGGTGCAACCCAAGGGCCTGAGCGTGCCGCAACGCGCCATC > NC_002947/3915724‑3916017 | aCCCAGTCTACCCGCGAGCTCAACGCCCTGCGCCGCGCCCTTCGCGCAGGCGAATTGCAGCAGGTGGGGGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACatc < 2:88521‑M2/150‑4 (MQ=255) aGTCTACCCGCGAGCTCAACGCCCTGCGCCGCGCCCTGCGCGCCGGCGAATTGCAGCAGGTGGGCGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACatcagcg < 1:742730‑M2/150‑8 (MQ=255) gTCTACCCGCGAGCTCAACGCCCTGCGCCGCGCAATGCGCAACAACGAATATCAGCGGGTGGGCGACGGTCATGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGGTGCCGTGCAAGCTGCTGTTCTCCGACatcagcgt < 1:694468‑M2/150‑9 (MQ=255) tCTACCCGCGAGCTCAACGCCCTGCGCCGCGCCCTGCGCGCCGGCGAATTGCAGCAGGTGGGCGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTc < 1:96490/150‑1 (MQ=255) tCTACCCGCGAGCTCAACGCCCTGCGCCGCGCCCTGCGCGCCGGCGAATTGCAGCAGGTGGGCGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTc < 1:704857/150‑1 (MQ=255) tACCCGCGAGCTCAACGCCCTGCGCCGCGCCCTGCGCGCCGGCGAATTGCAGCAGGTGGGCGACGGCCAGGCACGCGCCACGCTGATCGAGGAAGAGCGTCGTGTCGGGCCGCTGCCTGGCAAGCTGCTGTTCTCCGACATCAGCGTCgg > 2:209601/1‑149 (MQ=255) cTCAACGCCCTGCGCCGCGCCCTGCGCGCCGGCGAATTGCAGCAGGTGGGCGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGAc < 1:156337/129‑1 (MQ=255) cTCAACGCCCTGCGCCGCGCCCTGCGCGCCGGCGAATTGCAGCAGGTGGGCGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGAc > 2:156337/1‑129 (MQ=255) aaCGCCCTGCGCCGCGCCCTGCGCGCCGGCGAATTGCAGCAGGTGGGCGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCaccaac < 1:91024/150‑1 (MQ=255) aaCGCCCTGCGCCGCGCCCTGCGCGCCGGCGAATTGCAGCAGGTGGGCGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCaccaac > 1:322564/1‑150 (MQ=255) gCCCTGCGCCGCGCCCTGCGCGCCGGCGAATTGCAGCAGGTGGGCGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCACCAACCAg > 1:104695/1‑150 (MQ=255) gccgcgccCTGCGCGCCGGCGAATTGCAGCAGGTGGGCGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCa < 1:459618/132‑1 (MQ=255) gccgcgccCTGCGCGCCGGCGAATTGCAGCAGGTGGGCGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCa > 2:459618/1‑132 (MQ=255) ccgcgccCTGCGCGCCGGCGAATTGCAGCAGGTGGGCGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCACCAACCAGATCACCCt > 1:155963/1‑150 (MQ=255) cgcgccCTGCGCGCCGGCGAATTGCAGCAGGTGGGCGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCACCAACCAGATCACCCTg > 2:525192/1‑150 (MQ=255) ggCGAATTGCAGCAGGTGGGCGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCACCAACCAGATCACCCTGCGCAGCGAGTTcccc < 2:742730/150‑1 (MQ=255) gcagGTGGGCGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCACCAACCAGATCACCCTGCGCAGCGAGTTCCCCAACCCGGAc < 2:296520/148‑1 (MQ=255) gcagGTGGGCGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCACCAACCAGATCACCCTGCGCAGCGAGTTCCCCAACCCGGAc > 1:296520/1‑148 (MQ=255) ggTGGGCGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCACCAACCAGATCACCCTGCGCAGCGAGTTCCCCAACCCGGGCCTCGa < 2:104695/150‑1 (MQ=255) cGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCACCAACCAGATCACCCTGCGCAGCGAGTTCCCCAACCCGGACCTCGACctgct < 1:525192/150‑1 (MQ=255) gCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCACCAACCAGCTCACCCTGCGCAGCGAGTTCCCCAACCCGGACCTCGACCTGCTGCCAg < 2:694468/150‑1 (MQ=255) ccAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGAc < 2:512223/85‑1 (MQ=255) ccAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGAc > 1:512223/1‑85 (MQ=255) ccAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCGACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCACCAACCAGATCACCCTGCGCAGCGAGTTCCCCAACCCGGACCTCGACCTGCTGCCAgg < 1:166486/150‑1 (MQ=255) cACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCACCAACCAGATCACCCTGCGCAGCGAGTTCCCCAACCCGGACCTCGACCTGCTGCCAGGCAGCt > 1:475865/1‑150 (MQ=255) ccACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCACCAACCAGATCACCCTGCGCAGCGAGTTCCCCAACCCGGACCTCGACCTGCTGCCAGGCAGCTACGTGc < 2:322564/150‑1 (MQ=255) cACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACatcagcgtggcgcgtgcctggccgtcgcccacctgctgcaattcgccggcgcgcagggcgcggcgcagggcgttgagctcgcgggtaga < 1:425519‑M2/150‑90 (MQ=255) aCGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACatcagcgtggcgcgtgcctggccgtcgcccacctgctgcaattcgccggcgcgcagggcgcggcgcagggcgttgagctcgcgggtagac < 1:110637‑M2/150‑91 (MQ=255) ggATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCACCAACCAGATCACCCTGCGCAGCGAGTTCCCCAACCCGGACCTCGACCTGCTGCCAGGCAGCTACGTGCGGGTACGCCTGGa > 1:449795/1‑150 (MQ=255) gACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACatcagcgtggcgcgtgcctggccgtcgcccacctgctgcaattcgccggcgcgcagggcgcggcgcagggcgttgagctcgcgggtagactgggtgacatcggca > 2:110637‑M2/1‑45 (MQ=255) cGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCACCAACCAGATCACCCTGCGCAGCGAGTTCCCCAACCCGGACCTCGACCTGCTGCCAGGCAGCTACGTGCGGGTAc > 2:442054/1‑137 (MQ=255) cGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCACCAACCAGATCACCCTGCGCAGCGAGTTCCCCAACCCGGACCTCGACCTGCTGCCAGGCAGCTACGTGCGGGTAc < 1:442054/137‑1 (MQ=255) cAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCACCAACCAGATCACCCTGCGCAGCGAGTTCCCCAACCCGGACCTCGACCTGCTGCCAGGCAGCTACGTGCGGGTACGCCTGGAGCAAGCGGt < 2:403538/150‑1 (MQ=255) cGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCACCAACCAGATCACCCTGCGCAGCGAGTTCCCCAACCCGGACCTCGACCTGCTGCCAGGCAGCTACGTGCGGGTACGCCTGGAGCAAGCGGTGCAACCCAAgg > 2:141931/1‑150 (MQ=255) ccGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCACCAACCAGATCACCCTGCGCAGCGAGTTCCCCAACCCGGACCTCGACCTGCTGCCAGGCAGCTACGTGCGGGTACGCCTGGAGCAAGCGGTGCAACCCAAGGGCCTg > 1:499676/1‑150 (MQ=255) tgctgTTCTCCGACATCAGCGTCGACCCCAGAACCCACCCGATCACTCTCCGCAGAGAGAGCTCCAACCCGGACCTCGACCTGCTGCCAGGCAGCTACGTGCGGGTACGCCTGGAGCAAGCGGTGCAACCCAAGGGCCTGAGCGTGCCGc > 2:649449/1‑150 (MQ=255) tcCGACATCAGCGTCGACCCCAGCACCAACCAGATCACCCTGCGCAGCGAGTTCCCCAACCCGGACCTCGACCTGCTGCCAGGCAGCTACGTGCGGGTACGCCTGGAGCAAGCGGTGCAACCCAAGGGCCTGAGCGTGCCGCAACGCGcc > 1:582804/1‑150 (MQ=255) ccGACATCAGCGTCGACCCCAGCACCAACCAGATCACCCTGCGCAGCGAGTTCCCCAACCCGGACCTCGACCTGCTGCCAGGCAGCTACGTGCGGGTACGCCTGGAGCAAGCGGTGCAACCCAAGGGCCTGAGCGTGCCGCAACGCGCCa < 2:330948/150‑1 (MQ=255) gACATCAGCGTCGACCCCAGCACCAACCAGATCACCCTGCGCAGCGAGTTCCCCAACCCGGACCTCGACCTGCTGCCAGGCAGCTACGTGCGGGTACGCCTGGAGCAAGCGGTGCAACCCAAGGGCCTGAGCGTGCCGCAACGCGCCATc > 1:625256/1‑150 (MQ=255) | ACCCAGTCTACCCGCGAGCTCAACGCCCTGCGCCGCGCCCTGCGCGCCGGCGAATTGCAGCAGGTGGGCGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCACCAACCAGATCACCCTGCGCAGCGAGTTCCCCAACCCGGACCTCGACCTGCTGCCAGGCAGCTACGTGCGGGTACGCCTGGAGCAAGCGGTGCAACCCAAGGGCCTGAGCGTGCCGCAACGCGCCATC > NC_002947/3915724‑3916017 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |