New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2884298 =	30 (1.300)	4 (0.180)	4/244	NT	13.3%	coding (815/927 nt)	PP_2539	LysR family transcriptional regulator
	?	NC_002947	2884357 =	23 (1.020)					coding (874/927 nt)	PP_2539	LysR family transcriptional regulator

TCCACCAGCAATCGTGCCGCAGGCGATAACGGCGCCGCGACCCGGTGCACGATGCCGAACGGCTCGCTCAGCGCCCGGAGCGGCACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2884385‑2884298 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGACGGTCCCCATTGATTTCCAGTCCGTTGCCGAAGCGCTG  >  NC_002947/2884357‑2884448                                                                                                                                                                                      TCCACCAGCAATCGTGCCGCAGGCGATAACGGCGCCGCGACCCGGTGCACGATGCCGAACGGCTCGCTCAGCGCCCGGAGCGGCAC‑‑‑‑‑‑CGCCAGCGACACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGACGGTCCCCATTGAT                          >  1:105827/1‑150                         GATAACGGCGCCGCGACCCGGTGCACGATGCCGAACGGCTCGCTCAGCGCCCGGAGCGGCACCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGACGGTCCCCATT                             <  1:409874/129‑1                         GATAACGGCGCCGCGACCCGGTGCACGATGCCGAACGGCTCGCTCAGCGCCCGGAGCGGCACCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGACGGTCCCCATT                             >  2:409874/1‑129                               GGCGCCGCGACCCGGTGGACGATGCCGAACGGCTCGCTCAGCGCCCGGAGCGGCACCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGAGAAGTGTGAAGGTCCCCATTGATTTCCAGGCCGGTGCAGAtcggaag  >  2:314918/1‑143                                                                                                                                                                                      TCCACCAGCAATCGTGCCGCAGGCGATAACGGCGCCGCGACCCGGTGCACGATGCCGAACGGCTCGCTCAGCGCCCGGAGCGGCACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2884385‑2884298 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGACGGTCCCCATTGATTTCCAGTCCGTTGCCGAAGCGCTG  >  NC_002947/2884357‑2884448

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.