New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2884298 =	30 (1.300)	4 (0.180)	4/244	NT	13.3%	coding (815/927 nt)	PP_2539	LysR family transcriptional regulator
	?	NC_002947	2884357 =	23 (1.020)					coding (874/927 nt)	PP_2539	LysR family transcriptional regulator

GGGGTGGAGGTGTCACGGTATCCACTGGAGACCTTTTCCACCTTCGCCACCTTCATGCTGCTTGAAGATGACCCGACGTTGGTGGCAGTCATTCCCCGTGCGGTGGCGGCCTTTGCCGAGCAGCGCGGGTTGCTGGTGTCGC‑TGGCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGACGGTCCCCATTGATTTCCAGTCCGTTGCCGAA  >  NC_002947/2884153‑2884442                                                                                                                                                   |                                                                                                                                                 ggggTGGAGGTGTCACGGTATCCACTGGAGACCTTTTCCACCTTCGCCACCTTCATGCTGCTTGAAGATGACCCGACGTTGGTGGCAGTCATTCCCCGTGCGGTGGCGGCCTTTGCCGAGCAGCGCGGGTTGCTGGTGTCGC‑TGGCGGTg                                                                                                                                              <  1:307741/150‑1 (MQ=255)           tgtCACGGTATCCACTGGAGACCTTTTCCACCTTCGCCACCTTCATGCTGCTTGAAGATGACCCGACGTTGGTGGCAGTCATTCCCCGTGCGGTGGCGGCCTTTGCCGAGCAGCGCGGGTTGCTGGTGTCGC‑TGGCGGTGCCGCTCCggg                                                                                                                                    <  1:67559/150‑1 (MQ=255)                          tGGAGACCTTTTCCACCTTCGCCACCTTCATGCTGCTTGAAGATGACCCGACGTTGGTGGCAGTCATTCCCCGTGCGGTGGCGGCCTTTGCCGAGCAGCGCGGGTTGCTGGTGTCGC‑TGGCGGTGCCGCTCCGGGCGCTGAGCGAGCCGt                                                                                                                     >  1:489548/1‑150 (MQ=255)                            gagaCCTTTTCCACCTTCGCCACCTTCATGCTGCTTGAAGATGACCCGACGTTGGTGGCAGTCATTCCCCGTGCGGTGGCGGCCTTTGCCGAGCAGCGCGGGTTGCTGGTGTCGC‑TGGCGGTGc                                                                                                                                             >  2:274442/1‑124 (MQ=255)                            gagaCCTTTTCCACCTTCGCCACCTTCATGCTGCTTGAAGATGACCCGACGTTGGTGGCAGTCATTCCCCGTGCGGTGGCGGCCTTTGCCGAGCAGCGCGGGTTGCTGGTGTCGC‑TGGCGGTGc                                                                                                                                             <  1:274442/124‑1 (MQ=255)                            gagaCCTTTTCCACCTTCGCCACCTTCATGCTGCTTGAAGATGACCCGACGTTGGTGGCAGTCATTCCCCGTGCGGTGGCGGCCTTTGCCGAGCAGCGCGGGTTGCTGGTGTCGC‑TGGCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTc                                                                                                                   >  1:421424/1‑150 (MQ=255)                             agaCCTTTTCCACCTTCGCCACCTTCATGCTGCTTGAAGATGACCCGACGTTGGTGGCAGTCATCCCCCGTGCGGTGGCGGCCTTTGCCGAGCAGCGCGGGTTGCTGGTGTCGC‑TGGCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCg                                                                                                                  <  2:107874/150‑1 (MQ=255)                                 cTTTTCCACCTTCGCCACCTTCATGTTGCTTGAAGATGACCCGACGTTGGTGGCAGTCATTCCCCGTGCGGTGGCGGCCTTTGCCCAGCAGCGCGGGTTGCTGGTGTCGC‑TGGCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCAt                                                                                                              <  1:103059/150‑1 (MQ=255)                                 cTTTTCCACCTTCGCCACCTTCATGCTGCTTGAAGATGACCCGACGTTGGTGGCAGTCATTCCCCGTGCGGTGGCGGCCTTTGCCGAGCAGCGCGGGTTGCTGGTGTCGC‑TGGCGGt                                                                                                                                               <  2:573434/117‑1 (MQ=255)                                 cTTTTCCACCTTCGCCACCTTCATGCTGCTTGAAGATGACCCGACGTTGGTGGCAGTCATTCCCCGTGCGGTGGCGGCCTTTGCCGAGCAGCGCGGGTTGCTGGTGTCGC‑TGGCGGt                                                                                                                                               >  1:573434/1‑117 (MQ=255)                                 cTTTTCCACCTTCGCCACCTTCATGCTGCTTGAAGATGACCCGACGTTGGTGGCAGTCATTCCCCGTGCGGTGGCGGCCTTTGCCGAGCAGCGCGGGTTGCTGGTGTCGC‑TGGCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCg                                                                                                                  <  1:266163/146‑1 (MQ=255)                                 cTTTTCCACCTTCGCCACCTTCATGCTGCTTGAAGATGACCCGACGTTGGTGGCAGTCATTCCCCGTGCGGTGGCGGCCTTTGCCGAGCAGCGCGGGTTGCTGGTGTCGC‑TGGCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCg                                                                                                                  >  2:266163/1‑146 (MQ=255)                                 cTTTTCCACCTTCGCCACCTTCATGCTGCTTGAAGATGACCCGACGTTGGTGGCAGTCATTCCCCGTGCGGTGGCGGCCTTTGCCGAGCAGCGCGGGTTGCTGGTGTCGC‑TGGCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCAt                                                                                                              >  2:476213/1‑150 (MQ=255)                                 cTTTTCCACCTTCGCCACCTTCATGCTGCTTGAAGATGACCCGACGTTGGTGGCAGTCATTCCCCGTGCGGTGGCGGCCTTTGCCGAGCAGCGCGGGTTGCTGGTGTCGC‑TGGCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCAt                                                                                                              >  1:121584/1‑150 (MQ=255)                                  ttttCCACCTTCGCCACCTTCATGCTGCTTGAAGATGACCCGACGTTGGTGGCAGTCATTCCCCGTGCGGTGGCGGCCTTTGCCGAGCAGCGCGGGTTGCTGGTGTCGC‑TGGCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATc                                                                                                             <  2:121584/150‑1 (MQ=255)                                            tCGCCACCTTCATGCTGCTTGAAGATGACCCGACGTTGGTGGCAGTCATTCCCCGTGCGGTGGCGGCCTTTGCCGAGCAGCGCGGGTTGCTGGTGTCGC‑TGGCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCggg                                                                                                   <  2:45250/150‑1 (MQ=255)                                                       cttccgatctgcaccggcctggaaatcaatggggaccttcacacttctcccgccgtcagttcctccaccagcaatcgtgccgcaggcgataaCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTCCACCGGGTCGCGGCGcc                                                                                         >  2:314918‑M1/93‑150 (MQ=255)                                                              ttGAAGATGACCCGACGTTGGTGGCAGTCATTCCCCGTGCGGTGGCGGCCTTTGCCGAGCAGCGCGGGTTGCTGGTGTCGC‑TGGCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGc                                                                                 >  1:336151/1‑150 (MQ=255)                                                                         ccGACGTTGGTGGCAGTCATTCCCCGTGCGGTGGCGGCCTTTGCCGAGCAGCGCGGGTTGCTGGTGTCGC‑TGGCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGa                                                                      >  2:426693/1‑150 (MQ=255)                                                                           gACGTTGGTGGCAGTCATTCCCCGTGCGGTGGCGGCCTTTGCCGAGCAGCGCGGGTTGCTGGTGTCGC‑TGGCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGAtt                                                                    <  2:336151/150‑1 (MQ=255)                                                                              gTTGGTGGCAGTCATTCCCCGTGCGGTGGCGGCCTTTGCCGAGCAGCGCGGGTTGCTGGTGTCGC‑TGGCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCt                                                                 >  2:519774/1‑150 (MQ=255)                                                                                  aatggggaccgtcacacttcacccgccgtcagttcctccaccagcaatcgtgccgcaggcgataaCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATc                                                                                   <  1:409874‑M1/64‑1 (MQ=255)                                                                                  aatggggaccgtcacacttcacccgccgtcagttcctccaccagcaatcgtgccgcaggcgataaCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATc                                                                                   >  2:409874‑M1/66‑129 (MQ=255)                                                                                   atcaatggggaccgtcacacttcacccgccgtcagttcctccaccagcaatcgtgtcgctggcg‑‑GTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTgga                                                           >  1:105827‑M1/65‑150 (MQ=255)                                                                                         tCATTCCCCGTGCGGTGGCGGCCTTTGCCGAGCAGCGCGGGTTGCTGGTGTCGC‑TGGCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAAc                                                      >  1:185202/1‑150 (MQ=255)                                                                                           aTTCCCCGTGCGGTGGCGGCCTTTGCCGAGCAGCGCGGGTTGCTGGTGTCGC‑TGGCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGGACGATTGCTGGTGGAGGAACTg                                                    >  1:518370/1‑150 (MQ=255)                                                                                            ttCCCCGTGCGGTGGCGGCCTTTGCCGAGCAGCGCGGGTTGCTGGTGTCGC‑TGGCGGTGCCGCGCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGa                                                   <  2:197763/150‑1 (MQ=255)                                                                                               cccGTGCGGTGGCGGCCTTTGCCGAGCAGCGCGGGTTGCTGGTGTCGC‑TGGCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATc                                                                                                             >  1:523997/1‑89 (MQ=255)                                                                                               cccGTGCGGTGGCGGCCTTTGCCGAGCAGCGCGGGTTGCTGGTGTCGC‑TGGCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATc                                                                                                             <  2:523997/89‑1 (MQ=255)                                                                                               cccGTGCGGTGGCGGCCTTTGCCGAGCAGCGCGGGCTGCTGCTACAGCATCGC‑CAGCCGCACCTGTCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGAcgg                                                >  1:474424/1‑150 (MQ=255)                                                                                                            ggcCTTTGCCGAGCAGCGCGGGTTGCTGGTGTCGC‑TGGCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGtgtg                                   >  1:527147/1‑150 (MQ=255)                                                                                                             gcCTTTGCCGAGCAGCGCGGGTTGCTGGTGTCGC‑TGGCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGa                                  <  2:421424/150‑1 (MQ=255)                                                                                                             gcCTTTGCCGAGCAGCGCGGGTTGCTGGTGTCGC‑TGGCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGa                                  <  2:474424/150‑1 (MQ=255)                                                                                                               cTTTGCCGAGCAGCGCGGGTTGCTGGTGTCGC‑TGGCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGACg                                <  2:185202/150‑1 (MQ=255)                                                                                                                          agcGCGGGTTGCTGGTGTCGC‑TGGCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGACGGTcc                            >  2:352957/1‑143 (MQ=255)                                                                                                                          agcGCGGGTTGCTGGTGTCGC‑TGGCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGACGGTcc                            <  1:352957/143‑1 (MQ=255)                                                                                                                                        gtgtCGC‑TGGCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGACGGTCCCCATTGATTTCCAGTCCGTTg       <  2:489548/150‑1 (MQ=255)                                                                                                                                             gC‑TGGCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGACGGTCCCCATTGATTTCCAGTCCGTTGCCGaa  <  1:476213/150‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                 GGGGTGGAGGTGTCACGGTATCCACTGGAGACCTTTTCCACCTTCGCCACCTTCATGCTGCTTGAAGATGACCCGACGTTGGTGGCAGTCATTCCCCGTGCGGTGGCGGCCTTTGCCGAGCAGCGCGGGTTGCTGGTGTCGC‑TGGCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGACGGTCCCCATTGATTTCCAGTCCGTTGCCGAA  >  NC_002947/2884153‑2884442

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.