New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2884298 =	30 (1.300)	4 (0.180)	4/244	NT	13.3%	coding (815/927 nt)	PP_2539	LysR family transcriptional regulator
	?	NC_002947	2884357 =	23 (1.020)					coding (874/927 nt)	PP_2539	LysR family transcriptional regulator

TTGAAGATGACCCGACGTTGGTGGCAGTCATTCCCCGTGCGGTGGCGGCCTTTGCCGAGCAGCGCGGGTTGCTGGTGTCGC‑TGGCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGACGGTCCCCATTGATTTCCAGTCCGTTGCCGAAGCGCTGGCAGGGATAAGCGGCGGTTATCGGTGGATCAGTTCTTTTC  >  NC_002947/2884214‑2884488                                                                                                                                                 |                                                                                                                                    ttGAAGATGACCCGACGTTGGTGGCAGTCATTCCCCGTGCGGTGGCGGCCTTTGCCGAGCAGCGCGGGTTGCTGGTGTCGC‑TGGCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGc                                                                                                                               >  1:336151/1‑150 (MQ=255)            ccGACGTTGGTGGCAGTCATTCCCCGTGCGGTGGCGGCCTTTGCCGAGCAGCGCGGGTTGCTGGTGTCGC‑TGGCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGa                                                                                                                    >  2:426693/1‑150 (MQ=255)              gACGTTGGTGGCAGTCATTCCCCGTGCGGTGGCGGCCTTTGCCGAGCAGCGCGGGTTGCTGGTGTCGC‑TGGCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGAtt                                                                                                                  <  2:336151/150‑1 (MQ=255)                 gTTGGTGGCAGTCATTCCCCGTGCGGTGGCGGCCTTTGCCGAGCAGCGCGGGTTGCTGGTGTCGC‑TGGCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCt                                                                                                               >  2:519774/1‑150 (MQ=255)                     aatggggaccgtcacacttcacccgccgtcagttcctccaccagcaatcgtgccgcaggcgataaCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATc                                                                                                                                 <  1:409874‑M1/64‑1 (MQ=255)                     aatggggaccgtcacacttcacccgccgtcagttcctccaccagcaatcgtgccgcaggcgataaCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATc                                                                                                                                 >  2:409874‑M1/66‑129 (MQ=255)                      atcaatggggaccgtcacacttcacccgccgtcagttcctccaccagcaatcgtgtcgctggcg‑‑GTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTgga                                                                                                         >  1:105827‑M1/65‑150 (MQ=255)                            tCATTCCCCGTGCGGTGGCGGCCTTTGCCGAGCAGCGCGGGTTGCTGGTGTCGC‑TGGCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAAc                                                                                                    >  1:185202/1‑150 (MQ=255)                              aTTCCCCGTGCGGTGGCGGCCTTTGCCGAGCAGCGCGGGTTGCTGGTGTCGC‑TGGCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGGACGATTGCTGGTGGAGGAACTg                                                                                                  >  1:518370/1‑150 (MQ=255)                               ttCCCCGTGCGGTGGCGGCCTTTGCCGAGCAGCGCGGGTTGCTGGTGTCGC‑TGGCGGTGCCGCGCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGa                                                                                                 <  2:197763/150‑1 (MQ=255)                                  cccGTGCGGTGGCGGCCTTTGCCGAGCAGCGCGGGCTGCTGCTACAGCATCGC‑CAGCCGCACCTGTCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGAcgg                                                                                              >  1:474424/1‑150 (MQ=255)                                               ggcCTTTGCCGAGCAGCGCGGGTTGCTGGTGTCGC‑TGGCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGtgtg                                                                                 >  1:527147/1‑150 (MQ=255)                                                gcCTTTGCCGAGCAGCGCGGGTTGCTGGTGTCGC‑TGGCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGa                                                                                <  2:474424/150‑1 (MQ=255)                                                gcCTTTGCCGAGCAGCGCGGGTTGCTGGTGTCGC‑TGGCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGa                                                                                <  2:421424/150‑1 (MQ=255)                                                  cTTTGCCGAGCAGCGCGGGTTGCTGGTGTCGC‑TGGCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGACg                                                                              <  2:185202/150‑1 (MQ=255)                                                           tccaccagcaatcgtgccgcaggcgataacggcgccgcgacccggtgcacgatgccgaacggctcgctcagcgcccggagcggcac‑‑‑‑CGCCAGCGACACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGACGGTCCCCATTGAt                                                                  >  1:105827‑M2/87‑150 (MQ=255)                                                             agcGCGGGTTGCTGGTGTCGC‑TGGCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGACGGTcc                                                                          >  2:352957/1‑143 (MQ=255)                                                             agcGCGGGTTGCTGGTGTCGC‑TGGCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGACGGTcc                                                                          <  1:352957/143‑1 (MQ=255)                                                                           gtgtCGC‑TGGCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGACGGTCCCCATTGATTTCCAGTCCGTTg                                                     <  2:489548/150‑1 (MQ=255)                                                                                gC‑TGGCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGACGGTCCCCATTGATTTCCAGTCCGTTGCCGaa                                                <  1:476213/150‑1 (MQ=255)                                                                                 gataacggcgccgcgacccggtgcacgatgccgaacggctcgctcagcgcccggagcggcaccgTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGACGGTCCCCAtt                                                                     >  2:409874‑M2/65‑129 (MQ=255)                                                                                 gataacggcgccgcgacccggtgcacgatgccgaacggctcgctcagcgcccggagcggcaccgTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGACGGTCCCCAtt                                                                     <  1:409874‑M2/65‑1 (MQ=255)                                                                                       ggcgccgcgacccggtggacgatgccgaacggctcgctcagcgcccggagcggcaccgTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGAGAAGTGTGAAGGTCCCCATTGATTTCCAGGCCggtgcagatcggaag                                          >  2:314918‑M2/59‑143 (MQ=255)                                                                                             gCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGACGATCCCCATTGATTTCCAGTCCGTTGCCGAAGCGCTGGCAggg                                    >  2:421671/1‑150 (MQ=255)                                                                                                 cGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGACGGTCCCCATTGATTTCCAGTCCGTTGCCGAAGCGCTGGCAGGGATaa                                <  1:426693/150‑1 (MQ=255)                                                                                                        tGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGACGGTCCCCATTGATTTCCAGTCCGTTGCCGAAGCGCTGGCAGGGATAAGcggcgg                         >  2:290384/1‑150 (MQ=255)                                                                                                                         aTCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGACGGTCCCCATTGATTTCCAGTCCGTTGCCGAAGCGCTGGCAGGGATAAGCGGCGGTTATCGGTGGATCAGtt        >  2:72441/1‑150 (MQ=255)                                                                                                                               cACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGACGGTCCCCATTGATTTCCAGTCCGTTGCCGAAGCGCTGGCAGGGATAAGCGGCGGTTATCGGTGGATCAGTTCTTTTc  <  2:518370/150‑1 (MQ=255)                                                                                                                                aCCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGACGGTCCCCATTGATTTCCAGTCCGTTGc                                                    >  2:423422/1‑99 (MQ=255)                                                                                                                                aCCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGACGGTCCCCATTGATTTCCAGTCCGTTGc                                                    <  1:423422/99‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                    TTGAAGATGACCCGACGTTGGTGGCAGTCATTCCCCGTGCGGTGGCGGCCTTTGCCGAGCAGCGCGGGTTGCTGGTGTCGC‑TGGCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGACGGTCCCCATTGATTTCCAGTCCGTTGCCGAAGCGCTGGCAGGGATAAGCGGCGGTTATCGGTGGATCAGTTCTTTTC  >  NC_002947/2884214‑2884488

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.