New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3775020 =	25 (1.080)	4 (0.180)	3/236	NT	14.9%	intergenic (‑4/+47)	PP_3335/PP_3336	hypothetical protein/hypothetical protein
	?	NC_002947	3775055 =	22 (1.010)					intergenic (‑39/+12)	PP_3335/PP_3336	hypothetical protein/hypothetical protein

GACCCAGGCCGCACCCGCTAAAAGCGGGGCGTCGGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3775058‑3775020 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcctgGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGGGCGAATGCACCAGAACAGCGGGTTGCTGGTCGACAGGCAGCACAGGCAGGGCAAAGGCGGCCAGAA  >  NC_002947/3775055‑3775188                                                                                                                                                                               GACCCAGGCCGCACCCGCTAAAAGCGGGGCGTCGGCCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGGGCGAATGCACCAGAACAGCGGGTTGCTGGTCGACAGGCAGCAC                         >  1:148231/1‑150    CCAGGCCGCACCCGCTAAAAGCGGGGCGTCGGCCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGGGCGAATGCACCAGAACAGCGGGTTGCTGGTCGACAGGCAGCACAGG                      >  1:548105/1‑150    CCAGGCCGCACCCGCTAAAAGCGGGGCGTCGGCCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGGG                                                                   >  1:449971/1‑105    CCAGGCCGCACCCGCTAAAAGCGGGGCGTCGGCCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGGG                                                                   <  2:449971/105‑1                                   GCCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGGGCGAATGCACCAGAACAGCGGGTTGCTGGTCGACAGGCAGCACAGGCAGGGCAAAGGCGGCCAGAA  >  1:132116/1‑139                                   GCCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGGGCGAATGCACCAGAACAGCGGGTTGCTGGTCGACAGGCAGCACAGGCAGGGCAAAGGCGGCCAGAA  <  2:132116/139‑1                                                                                                                                                                               GACCCAGGCCGCACCCGCTAAAAGCGGGGCGTCGGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3775058‑3775020 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcctgGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGGGCGAATGCACCAGAACAGCGGGTTGCTGGTCGACAGGCAGCACAGGCAGGGCAAAGGCGGCCAGAA  >  NC_002947/3775055‑3775188

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.