New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3775020 =	25 (1.080)	4 (0.180)	3/236	NT	14.9%	intergenic (‑4/+47)	PP_3335/PP_3336	hypothetical protein/hypothetical protein
	?	NC_002947	3775055 =	22 (1.010)					intergenic (‑39/+12)	PP_3335/PP_3336	hypothetical protein/hypothetical protein

AGGTTGACGAAGCTGCGGGCATTGCAGGGGTAATCGGGAAACGGCAACAGGAAGTCGCCAGTGCGCGACGGGCGAACGGAGGGCTCCAGCAACGCTGAAGCGTTCAGGGTACGAGACATCGTGTGCTCCGGGGTACGGCTAGCCATCGGCAGGCCGACGCCCCGCTTTTAGCGGGTGCGGCCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGGGCGAATGCACCAGAACAGCGGGTTGCTGGTCGACAGGCAG  >  NC_002947/3774871‑3775162                                                                                                                                                      |                                                                                                                                               aGGTTGACGAAGCTGCGGGCATTGCAGGGGTAATCGGGAAACGGCAACAGGAAGTCGCCAGTGCGCGACGGGCGAACGGAGGGCTCCAGCAACGCTGAAGCGTTCAGGGTACGAGACATCGTGTGCTCCGGGGTACGGCTAGCCATCGGc                                                                                                                                                >  2:335740/1‑150 (MQ=255)       aCGAAGCTGCGGGCATTGCAGGGGTAATCGGGAAACGGCAACAGGAAGTCGCCAGTGCGCGACGGGCGAACGGAGGGCTCCAGCAACGCTGAAGCGTTCAGGGTACGAGACATCGTGTGCTGCGGGGAACAGCGAAGCATCGGCAGGCCg                                                                                                                                          >  2:287201/1‑150 (MQ=255)        cGAAGCTGCGGGCATTGCAGGGGTAATCGGGAAACGGCAACAGGAAGTCGCCAGTGCGCGACGGGCGAACGGAGGGCTCCAGCAACGCTGAAGCGTTCAGGGTACGAGACATCGTGTGCTCCGGGGTACGGCTAGCCATCGGCAGGCCGa                                                                                                                                         <  2:556535/150‑1 (MQ=255)                ttctggccgcctttgccctgcctgtgctgcctgtcgaccagcaacccgctgttctggtgcattcgccccggcactgctggccgtcgatcaacccccgtgcctccccgaaagtgatcgcctgacctgcaaggaccCAGGc                                                                                                                                            >  1:132116‑M1/135‑139 (MQ=255)                ttctggccgcctttgccctgcctgtgctgcctgtcgaccagcaacccgctgttctggtgcattcgccccggcactgctggccgtcgatcaacccccgtgcctccccgaaagtgatcgcctgacctgcaaggaccCAGGc                                                                                                                                            <  2:132116‑M1/5‑1 (MQ=255)                  ggCATTGCAGGGGTAATCGGGAAACGGCAACAGGAAGTCGCCAGTGCGCGACGGGCGAACGGAGGCCTCCAGCAACGCTGAAGCGTTCAGGGTACGAGACATCGTGTGCTCCGGGGTACGGCTAGCCATCGGCAGGCCGACGCCCCGCtt                                                                                                                               <  2:549676/150‑1 (MQ=255)                       tGCAGGGGTAATCGGGAAACGGCAACAGTAAGTCGCCAGTGCGCGACGGGCGAACGGAGGGCTCCAGCAACGCTGAAGCGTTCAGGGTACGAGACATCGTGTGCTCCGGGGTACGGCTAGCCATCGGCAGGCCGACGCCCCGCTTTTAGc                                                                                                                          <  1:240726/150‑1 (MQ=255)                                   cGGGAAACGGCAACAGGAAGTCGCCAGTGCGCGACGGACGATCGGAGGGCTCCAGCAACGCTGAAGCGTTCAGGGTACGAGACATCGTGTGCTCCGGGGTACGGCTAGCCATCGGCAGGCCGACGCCCCGCTTTTAGCGGGTGCGGCCTg                                                                                                              <  1:163104/150‑1 (MQ=255)                                    cctgtgctgcctgtcgaccagcaacccgctgttctggtgcattcgccccggcactgctggccgtcgatcaacccccgtgcctccccgaaagtgatcgcctgacctgcaaggaccCAGGCCGACGCCCCGCTTTTAGCGGGTGCGGCCTgg                                                                                                             >  1:548105‑M1/115‑150 (MQ=255)                                       gtgctgcctgtcgaccagcaacccgctgttctggtgcattcgccccggcactgctggccgtcgatcaacccccgtgcctccccgaaagtgatcgcctgacctgcaaggaccCAGGCCGACGCCCCGCTTTTAGCGGGTGCGGCCTGGGTc                                                                                                          >  1:148231‑M1/112‑150 (MQ=255)                                             cAACAGGAAGTCGCCAGTGCGCGACGGGCGAACGGAGGGCTCCAGCAACGCTGAAGCGTTCAGGGTACGAGACATCGTGTGCTCCGGGGTACGGCTAGCCATCGGCAGGCCGACGCCCCGCTTTTAGCGGGTGCGGCCTGGGTCCTTGCa                                                                                                    <  1:576324/150‑1 (MQ=255)                                               aCAGGAAGTCGCCAGTGCGCGACGGGCGAACGGAGGGCTCCAGCAACGCTGAAGCGTTCAGGGTACGAGACATCGTGTGCTCCGGGGTACGGCTAGCCATCGGCAGGCCGACGCCCCGCTTTTAGCGGGTGCGGCCTGGGTCCTTGCggg                                                                                                  >  2:412945/1‑150 (MQ=255)                                                        cGCCAGTGCGCGACGGGCGAACGGAGGGCTCCAGCAACGCTGAAGCGTTCAGGGTACGAGACATCGTGTGCTCCGGGGTACGGCTAGCCATCGGCAGGCCGACGCCCCGCTTTTAGCGGGTGCGGCCTGGGTCCTTGCAGGTCAGGCGa                                                                                          <  1:341461/149‑1 (MQ=255)                                                        cGCCAGTGCGCGACGGGCGAACGGAGGGCTCCAGCAACGCTGAAGCGTTCAGGGTACGAGACATCGTGTGCTCCGGGGTACGGCTAGCCATCGGCAGGCCGACGCCCCGCTTTTAGCGGGTGCGGCCTGGGTCCTTGCAGGTCAGGCGa                                                                                          >  2:341461/1‑149 (MQ=255)                                                         gCCAGTGCGCGACGGGCGAACGGAGGGCTCCAGCAACGCTGAAGCGTTCAGGGTACGAGACATCGTGTGCTCCGGGGTACGGCTAGCCATCGGCAGGCCGACGCCCCGCTTTTAGCGGGTg                                                                                                                     <  1:91096/121‑1 (MQ=255)                                                         gCCAGTGCGCGACGGGCGAACGGAGGGCTCCAGCAACGCTGAAGCGTTCAGGGTACGAGACATCGTGTGCTCCGGGGTACGGCTAGCCATCGGCAGGCCGACGCCCCGCTTTTAGCGGGTg                                                                                                                     >  2:91182/1‑121 (MQ=255)                                                         gCCAGTGCGCGACGGGCGAACGGAGGGCTCCAGCAACGCTGAAGCGTTCAGGGTACGAGACATCGTGTGCTCCGGGGTACGGCTAGCCATCGGCAGGCCGACGCCCCGCTTTTAGCGGGTg                                                                                                                     <  1:91182/121‑1 (MQ=255)                                                         gCCAGTGCGCGACGGGCGAACGGAGGGCTCCAGCAACGCTGAAGCGTTCAGGGTACGAGACATCGTGTGCTCCGGGGTACGGCTAGCCATCGGCAGGCCGACGCCCCGCTTTTAGCGGGTg                                                                                                                     >  2:91096/1‑121 (MQ=255)                                                                    aCGGGCGAACGGAGGGCTCCAGCAACGCTGAAGCGTTCAGGGTACGAGACATCGTGTGCTCCGGGGTACGGCTAGCCATCGGCAGGCCGACGCCCCGCTTTTAGCGGGTGCGGCCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGa                                                                             <  1:335740/150‑1 (MQ=255)                                                                                aGGGCTCCAGCAACGCTGAAGCGTTCAGGGTACGAGACATCGTGTGCTCCGGGGTACGGCTAGCCATCGGCAGGCCGACGCCCCGCTTTTAGCGGGTGCGGCCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGtt                                                                 <  2:269640/150‑1 (MQ=255)                                                                                 ccccggcactgctggccgtcgatcaacccccgtgcctccccgaaagtgatcgcctgacctgcaaggaccCAGGCCGACGCCCCGCTTTTAGCGGGTGCGGCCTgg                                                                                                             <  2:449971‑M1/36‑1 (MQ=255)                                                                                 ccccggcactgctggccgtcgatcaacccccgtgcctccccgaaagtgatcgcctgacctgcaaggaccCAGGCCGACGCCCCGCTTTTAGCGGGTGCGGCCTgg                                                                                                             >  1:449971‑M1/70‑105 (MQ=255)                                                                                               cTGAAGCGTTCAGGGTACGAGACATCGTGTGCTCCGGGGTACGGCTAGCCATCGGCAGGCCGACGCCCCGCTTTTAGCGGGTGCGGCCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCcagca                                                  >  2:121575/1‑150 (MQ=255)                                                                                                         cAGGGTACGAGACATCGTGTGCTCCGGGGTACGGCTAGCCATCGGCAGGCCGACGCCCCGCTTTTAGCGGGTGCGGCCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGGGc                                        <  1:456997/150‑1 (MQ=255)                                                                                                            ggTACGAGACAGGGTGTGCTCCGGGGTACGGCGAGCCATCGGCAGGCCGACGCCCCGGTTTTAGCTGGTGCGGCCTGGGTCCTTGGAGGTCAGGCGATCACGTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGAAGTGCCGGGGCGaa                                     <  1:301391/150‑1 (MQ=255)                                                                                                               aCGAGACATCGTGTGCTCCGGGGTACGGCTAGCCATCGGCAGGCCGACGCCCCGCTTTTAGCGGGTGCGGCCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGGGCGAATGc                                  <  2:246083/150‑1 (MQ=255)                                                                                                                       tCGTGTGCTCCGGGGTACGGCTAGCCATCGGCAGGCCGACGCCCCGCTTTTAGCGGGTGCGGCCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGGGCGAATGCACCAGAAc                          >  2:123039/1‑150 (MQ=255)                                                                                                                                   gggTACGGCTAGCCATCGGCAGGCCGACGCCCCGCTTTTAGCGGGTGCGGCCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGGGCGAATGCACCAGAACAGCGGGTTGCTg              <  1:123039/150‑1 (MQ=255)                                                                                                                                         ggCTAGCCATCGGCAGGCCGACGCCCCGCTTTTAGCGGGTGCGGCCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGGGCGAATGCACCAGAACAGCGGGTTGCTGGTCGAc        >  1:365447/1‑150 (MQ=255)                                                                                                                                          gCTAGCCATCGGCAGGCCGACGCCCCGCTTTTAGCGGGTGCGGCCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGACACGGGGGTTGATCGAGGGCCAGCAGTGCCGGGGCGATTGCACCAGAACAACGGGTTGCTGGTCGACa       >  2:288998/1‑150 (MQ=255)                                                                                                                                              gCCATCGGCAGGCCGACGCCCCGCTTTTAGCGGGTGCGGCCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGGGCGAATGCACCAGAACAGCGGGTTGCTGGTCGACAGgca   <  1:121575/150‑1 (MQ=255)                                                                                                                                               ccATCGGCAGGCCGACGCCCCGCTTTTAGCGGGTGCGGCCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGGGCGAATGCACCAGAACAGAGGGTTGCTGGTCGACAGgcag  >  2:419709/1‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                               AGGTTGACGAAGCTGCGGGCATTGCAGGGGTAATCGGGAAACGGCAACAGGAAGTCGCCAGTGCGCGACGGGCGAACGGAGGGCTCCAGCAACGCTGAAGCGTTCAGGGTACGAGACATCGTGTGCTCCGGGGTACGGCTAGCCATCGGCAGGCCGACGCCCCGCTTTTAGCGGGTGCGGCCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGGGCGAATGCACCAGAACAGCGGGTTGCTGGTCGACAGGCAG  >  NC_002947/3774871‑3775162

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.