New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 3775020 = | 25 (1.080) | 4 (0.180) | 3/236 | NT | 14.9% | intergenic (‑4/+47) | PP_3335/PP_3336 | hypothetical protein/hypothetical protein |
? | NC_002947 | 3775055 = | 22 (1.010) | intergenic (‑39/+12) | PP_3335/PP_3336 | hypothetical protein/hypothetical protein |
GGGAAACGGCAACAGGAAGTCGCCAGTGCGCGACGGGCGAACGGAGGGCTCCAGCAACGCTGAAGCGTTCAGGGTACGAGACATCGTGTGCTCCGGGGTACGGCTAGCCATCGGCAGGCCGACGCCCCGCTTTTAGCGGGTGCGGCCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGGGCGAATGCACCAGAACAGCGGGTTGCTGGTCGACAGGCAGCACAGGCAGGGCAAAGGCGGCCAGAATCAAA > NC_002947/3774906‑3775193 | cctgtgctgcctgtcgaccagcaacccgctgttctggtgcattcgccccggcactgctggccgtcgatcaacccccgtgcctccccgaaagtgatcgcctgacctgcaaggaccCAGGCCGACGCCCCGCTTTTAGCGGGTGCGGCCTgg > 1:548105‑M1/115‑150 (MQ=255) gtgctgcctgtcgaccagcaacccgctgttctggtgcattcgccccggcactgctggccgtcgatcaacccccgtgcctccccgaaagtgatcgcctgacctgcaaggaccCAGGCCGACGCCCCGCTTTTAGCGGGTGCGGCCTGGGTc > 1:148231‑M1/112‑150 (MQ=255) cAACAGGAAGTCGCCAGTGCGCGACGGGCGAACGGAGGGCTCCAGCAACGCTGAAGCGTTCAGGGTACGAGACATCGTGTGCTCCGGGGTACGGCTAGCCATCGGCAGGCCGACGCCCCGCTTTTAGCGGGTGCGGCCTGGGTCCTTGCa < 1:576324/150‑1 (MQ=255) aCAGGAAGTCGCCAGTGCGCGACGGGCGAACGGAGGGCTCCAGCAACGCTGAAGCGTTCAGGGTACGAGACATCGTGTGCTCCGGGGTACGGCTAGCCATCGGCAGGCCGACGCCCCGCTTTTAGCGGGTGCGGCCTGGGTCCTTGCggg > 2:412945/1‑150 (MQ=255) cGCCAGTGCGCGACGGGCGAACGGAGGGCTCCAGCAACGCTGAAGCGTTCAGGGTACGAGACATCGTGTGCTCCGGGGTACGGCTAGCCATCGGCAGGCCGACGCCCCGCTTTTAGCGGGTGCGGCCTGGGTCCTTGCAGGTCAGGCGa > 2:341461/1‑149 (MQ=255) cGCCAGTGCGCGACGGGCGAACGGAGGGCTCCAGCAACGCTGAAGCGTTCAGGGTACGAGACATCGTGTGCTCCGGGGTACGGCTAGCCATCGGCAGGCCGACGCCCCGCTTTTAGCGGGTGCGGCCTGGGTCCTTGCAGGTCAGGCGa < 1:341461/149‑1 (MQ=255) aCGGGCGAACGGAGGGCTCCAGCAACGCTGAAGCGTTCAGGGTACGAGACATCGTGTGCTCCGGGGTACGGCTAGCCATCGGCAGGCCGACGCCCCGCTTTTAGCGGGTGCGGCCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGa < 1:335740/150‑1 (MQ=255) aGGGCTCCAGCAACGCTGAAGCGTTCAGGGTACGAGACATCGTGTGCTCCGGGGTACGGCTAGCCATCGGCAGGCCGACGCCCCGCTTTTAGCGGGTGCGGCCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGtt < 2:269640/150‑1 (MQ=255) ccccggcactgctggccgtcgatcaacccccgtgcctccccgaaagtgatcgcctgacctgcaaggaccCAGGCCGACGCCCCGCTTTTAGCGGGTGCGGCCTgg < 2:449971‑M1/36‑1 (MQ=255) ccccggcactgctggccgtcgatcaacccccgtgcctccccgaaagtgatcgcctgacctgcaaggaccCAGGCCGACGCCCCGCTTTTAGCGGGTGCGGCCTgg > 1:449971‑M1/70‑105 (MQ=255) cTGAAGCGTTCAGGGTACGAGACATCGTGTGCTCCGGGGTACGGCTAGCCATCGGCAGGCCGACGCCCCGCTTTTAGCGGGTGCGGCCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCcagca > 2:121575/1‑150 (MQ=255) cAGGGTACGAGACATCGTGTGCTCCGGGGTACGGCTAGCCATCGGCAGGCCGACGCCCCGCTTTTAGCGGGTGCGGCCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGGGc < 1:456997/150‑1 (MQ=255) ggTACGAGACAGGGTGTGCTCCGGGGTACGGCGAGCCATCGGCAGGCCGACGCCCCGGTTTTAGCTGGTGCGGCCTGGGTCCTTGGAGGTCAGGCGATCACGTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGAAGTGCCGGGGCGaa < 1:301391/150‑1 (MQ=255) aCGAGACATCGTGTGCTCCGGGGTACGGCTAGCCATCGGCAGGCCGACGCCCCGCTTTTAGCGGGTGCGGCCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGGGCGAATGc < 2:246083/150‑1 (MQ=255) tCGTGTGCTCCGGGGTACGGCTAGCCATCGGCAGGCCGACGCCCCGCTTTTAGCGGGTGCGGCCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGGGCGAATGCACCAGAAc > 2:123039/1‑150 (MQ=255) gggTACGGCTAGCCATCGGCAGGCCGACGCCCCGCTTTTAGCGGGTGCGGCCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGGGCGAATGCACCAGAACAGCGGGTTGCTg < 1:123039/150‑1 (MQ=255) ggCTAGCCATCGGCAGGCCGACGCCCCGCTTTTAGCGGGTGCGGCCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGGGCGAATGCACCAGAACAGCGGGTTGCTGGTCGAc > 1:365447/1‑150 (MQ=255) gCTAGCCATCGGCAGGCCGACGCCCCGCTTTTAGCGGGTGCGGCCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGACACGGGGGTTGATCGAGGGCCAGCAGTGCCGGGGCGATTGCACCAGAACAACGGGTTGCTGGTCGACa > 2:288998/1‑150 (MQ=255) gCCATCGGCAGGCCGACGCCCCGCTTTTAGCGGGTGCGGCCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGGGCGAATGCACCAGAACAGCGGGTTGCTGGTCGACAGgca < 1:121575/150‑1 (MQ=255) ccATCGGCAGGCCGACGCCCCGCTTTTAGCGGGTGCGGCCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGGGCGAATGCACCAGAACAGAGGGTTGCTGGTCGACAGgcag > 2:419709/1‑150 (MQ=255) gacccaggccgcacccgctaaaagcggggcgtcggcctgGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGGGCGAATGCACCAGAACAGCGGGTTGCTGGTCGACAGGCAGcac > 1:148231‑M2/40‑150 (MQ=255) ccaggccgcacccgctaaaagcggggcgtcggcctgGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCgggg < 2:449971‑M2/69‑1 (MQ=255) ccaggccgcacccgctaaaagcggggcgtcggcctgGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCgggg > 1:449971‑M2/37‑105 (MQ=255) ccaggccgcacccgctaaaagcggggcgtcggcctgGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGGGCGAATGCACCAGAACAGCGGGTTGCTGGTCGACAGGCAGCAcagg > 1:548105‑M2/37‑150 (MQ=255) ccGCTTTTAGCGGGTGCGGCCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGGGCGAATGCACCAGAACAGCGGGTTGCTGGTCGACAGGCAGCACAGGCAGGGCAAAggcg > 2:180039/1‑150 (MQ=255) ccGCTTTTAGCGGGTGCGGCCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGGGCGAATGCACCAGAACAGCGGGTTGCTGGTCGACAGGCAGCACAGGCAGGGCAAAggcg > 2:287957/1‑150 (MQ=255) ccGCTTTTAGCGGGTGCGGCCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGGGCGAATGCACCAGAACAGCGGGTTGCTGGTCGACAGGCAGCACAGGCAGGGCAAAggcg > 1:591261/1‑150 (MQ=255) ccGCTTTTAGCGGGTGCGGCCTGGGTCCTTGCAGATCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGGGCGAATGCACCAGAACAGCGGGTTGCTGGTCGACAGGCAGCACAGGCAGGGCAAAggcg > 1:133886/1‑150 (MQ=255) cTTTTAGCGGGTGCGGCCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGGGCGAATGCACCAGAACAGCGGGTTGCTGGTCGACAGGCAGCACAGGCAGGGCAAAGGCGGcc < 2:108357/150‑1 (MQ=255) cTTTTAGCGGGTGCGGCCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGGGCGAATGCACCAGAACAGCGGGTTGCTGGTCGACAGGCAGCACAGGCAGGGCAAAGGCGGcc < 2:382967/150‑1 (MQ=255) ggTGCGGCCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGGGCGAATGCACCAGAACAGCGGGTTGCTGGTCGACAGGCAGCACAGGCAGGGCAAAGGCGGCCAGAATCaaa < 2:365447/150‑1 (MQ=255) ggTGCGGCCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGGGCGAATGCACCAGAACAGCGGGTTGCTGGTCGACAGGCAGCACAGGCAGGGCAAAGGCGGCCAGAATCaaa < 1:287957/150‑1 (MQ=255) gcctgGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGGGCGAATGCACCAGAACAGCGGGTTGCTGGTCGACAGGCAGCACAGGCAGGGCAAAGGCGGCCAGaa < 2:132116‑M2/134‑1 (MQ=255) gcctgGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGGGCGAATGCACCAGAACAGCGGGTTGCTGGTCGACAGGCAGCACAGGCAGGGCAAAGGCGGCCAGaa > 1:132116‑M2/6‑139 (MQ=255) | GGGAAACGGCAACAGGAAGTCGCCAGTGCGCGACGGGCGAACGGAGGGCTCCAGCAACGCTGAAGCGTTCAGGGTACGAGACATCGTGTGCTCCGGGGTACGGCTAGCCATCGGCAGGCCGACGCCCCGCTTTTAGCGGGTGCGGCCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGGGCGAATGCACCAGAACAGCGGGTTGCTGGTCGACAGGCAGCACAGGCAGGGCAAAGGCGGCCAGAATCAAA > NC_002947/3774906‑3775193 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |