New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 4269857 = | 18 (0.780) | 2 (0.090) | 4/242 | NT | 9.9% | intergenic (‑513/‑48) | PP_3740/mrdA‑I | MFS transporter/transpeptidase |
? | NC_002947 | 4269876 = | 19 (0.850) | intergenic (‑532/‑29) | PP_3740/mrdA‑I | MFS transporter/transpeptidase |
CAAGACGGCACACAGGCTGAACACCATGGCAGCGCAGGCCAGAAGCCGACGGTTGACCAGGTGCTTTTCCTTTTCGTGGTCCTTTAGCGGGATGGGTTGCGGCATCTGTGAATCGATCCTGAGGGGTGGCAATACGC‑GCGCGATCGGGCCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4270009‑4269857 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgTATTGCCACCCCTCAGGAT > NC_002947/4269876‑4269894 CAAGACGGCACACAGGCTGAACACCATGGCAGCGCAGGCCAGAAGCCGACGGTTGACCAGGTGCTTTTCCTTTTCGTGGTCCTTTAGCGGGATGGGTTGCGGCATCTGTGAATCGATCCTCAGGGGTGGCAATACGC‑GCGCGATCGGGCC > 2:91736/1‑150 TTTTCGTGGTCCTTTAGCGGGATGGGTTGCGGCATCTGTGAATCGATCCTGAGGGGTGGCAATACGCGGCCCGATCGCG‑CGCGTATT > 1:83640/1‑87 TTTTCGTGGTCCTTTAGCGGGATGGGTTGCGGCATCTGTGAATCGATCCTGAGGGGTGGCAATACGCGGCCCGATCGCG‑CGCGTATT < 2:83640/87‑1 TTTAGCGGGATGGGTTGCGGCATCTGTGAATCGATCCTGAGGGGTGGCAATACGCGGCCCGATCGCG‑CGCGTATTGCCACCCCTCAGGAT > 1:65847/1‑90 TTTAGCGGGATGGGTTGCGGCATCTGTGAATCGATCCTGAGGGGTGGCAATACGCGGCCCGATCGCG‑CGCGTATTGCCACCCCTCAGGAT < 2:65847/90‑1 CAAGACGGCACACAGGCTGAACACCATGGCAGCGCAGGCCAGAAGCCGACGGTTGACCAGGTGCTTTTCCTTTTCGTGGTCCTTTAGCGGGATGGGTTGCGGCATCTGTGAATCGATCCTGAGGGGTGGCAATACGC‑GCGCGATCGGGCCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4270009‑4269857 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgTATTGCCACCCCTCAGGAT > NC_002947/4269876‑4269894 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |