New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4269857 =	18 (0.780)	2 (0.090)	4/242	NT	9.9%	intergenic (‑513/‑48)	PP_3740/mrdA‑I	MFS transporter/transpeptidase
	?	NC_002947	4269876 =	19 (0.850)					intergenic (‑532/‑29)	PP_3740/mrdA‑I	MFS transporter/transpeptidase

ACCCCTGACTCGTCATCATGACTCCGCAATGAACAAATCTTCATATTCCCCCTCAGCGCCCTGATCATGGGGCACACAGCCGATGCCAGCCAGCGGGCAGCCGGGGCTCGTCTTGAGGGTGCGGTACGGGTTGCGTAGCATCCGCGGCCCGATCGCGC‑GCGTATTGCCACCCCTCAGGATCGATTCACAGATGCCGCAACCCATCCCGCTAAAGGACCACGAAAAGGAAAAGCACCTGGTCAACCGTCGGCTTCTGGCCTGCGCTGCCATGGTGTTCAGCCTGTGTGCC  >  NC_002947/4269715‑4270003                                                                                                                                               |                                                                                                                                                    accCCTGACTCGTCATCATGACTCCGCAATGAACAAATCTTCATATTCCCCCTCAGCGCCCTGATCATGGGGCACACAGCCGATGCCAGCCAGCGGGCAGCCGGGGCTCGTCTTGAGGGTGCGGTACGGGTTGCGTAGCATCCGCGGccc                                                                                                                                              <  1:70536/150‑1 (MQ=255)                  atGACTCCGCAATGAACAAATCTTCATATTCCCCCTCAGCGCCCTGATCATGGGGCACACAGCCGATGCCAGCCAGCGGGCAGCCGGGGCTCGTCTTGAGGGTGCGGTACGGGTTGCGTAGCATCCGCGGCCCGATCGCGC‑GCGTATTGc                                                                                                                            >  1:226423/1‑150 (MQ=255)                        ccGAAATGAACAAATCTGCATATTCCCCCCCTCCGCCCTGATCATGGGGCACACAGCAGATGCCAGGCAGCGGGCAGCCGCGGCTCGTCTTGACGGTGCGGTACGGTTTGCGTAGCATCCGCGGCCCGATCGCGC‑GCGTATGGCCAcccc                                                                                                                      <  2:129416/150‑1 (MQ=255)                                    aaTCTTCATATTCCCCCTCAGCGCCCTGATCATGGGGCACACAGCCGATGCCAGCCAGCGGGCAGCCGGGGCTCGTCTTGAGGGTGCGGTACGGGTTGCGTAGCATCCGCGGCCCGATCGCGC‑GCGTATAGCCACCCCTCgggtgcgact                                                                                                          <  2:596642/150‑8 (MQ=255)                                            tatTCCCCCTCAGCGCCCTGATCATGGGGCACACAGCCGATGCCAGCCAGCGGGCAGCCGGGGCTCGTCTTGAGGGTGCGGTACGGGTTGCGTAGCATCCGCGGCCCGATCGCGC‑GCGTATTGCCACCCCTCAGGATCGATTCACAGATg                                                                                                  >  1:209795/1‑150 (MQ=255)                                             atTCCCCCTCAGCGCCCTGATCATGGGGCACACAGCCGATGCCAGCCAGCGGGCAGCCGGGGCTCGTCTTGAGGGTGCGGTACGGGTTGCGTAGCATCCGCGGCCCGATCGCGC‑GCGTATTGCCACCCCTCAGGATCGATTcaca                                                                                                      >  1:378344/1‑145 (MQ=255)                                             atTCCCCCTCAGCGCCCTGATCATGGGGCACACAGCCGATGCCAGCCAGCGGGCAGCCGGGGCTCGTCTTGAGGGTGCGGTACGGGTTGCGTAGCATCCGCGGCCCGAGCGCGC‑GCGTATTGCCACCCCTCAGGATCGATTcaca                                                                                                      <  2:378344/145‑1 (MQ=255)                                                                        gCACACAGCCGATGCCAGCCAGCGGGCAGCCGGGGCTCGTCTTGAGGGTGCGGTACGGGTTGCGTAGCATCCGCGGCCCGATCGCGC‑GCGTATTGCCACCCCTCAGGATCGATTCACAGATGCCGCAACCCATCCCGCTAAAGGACCACg                                                                      >  1:140576/1‑150 (MQ=255)                                                                                       cagccagcGGGCAGCCGGGGCTCGTCTTGAGGGTGCGGTACGGGTTGCGTAGCATCCGCGGCCCGATCGCGC‑GCGTATTGCCACCCCTCAGGATCGATTCACAGATGCCGCAACCCATCCCGCTAAAGGACCACGAAAAGGAAAAGCAcc                                                       <  2:356406/150‑1 (MQ=255)                                                                                        agccagcGGGCAGCCGGGGCTCGTCTTGAGGGTGCGGTACGGGTTGCGTAGCATCCGCGGCCCGATCGCGC‑GCGTATTGCCACCCCTCAGGATCGATTCACAGATGCCGCAAc                                                                                           >  2:226269/1‑113 (MQ=255)                                                                                        agccagcGGGCAGCCGGGGCTCGTCTTGAGGGTGCGGTACGGGTTGCGTAGCATCCGCGGCCCGATCGCGC‑GCGTATTGCCACCCCTCAGGATCGATTCACAGATGCCGCAAc                                                                                           <  1:226269/113‑1 (MQ=255)                                                                                        agccagcGGGCAGCCGGGGCTCGTCTTGAGGGTGCGGTACGGGTTGCGTAGCATCCGCGGCCCGATCGCGC‑GCGTATTGCCACCCCTCAGGATCGATTCACAGATGCCGCAACCCATCCCGCTAAAGGACCACGAAAAGGAAAAGCACCt                                                      >  2:367965/1‑150 (MQ=255)                                                                                         gccagcGGGCAGCCGGGGCTCGTCTTGAGGGTGCGGTACGGGTTGCGTAGCATCCGCGGCCCGATCGCGC‑GCGTATTGCCACCCCTCAGGATCGATTCACAGATGCCGCAACCCATCCCGCTAAAGGACCACGAAAAGGAAAAGCACCTg                                                     <  2:209795/150‑1 (MQ=255)                                                                                                                          cGGTACGGGTTGCGTAGCATCCGCGGCCCGATCGCGC‑GCGTATTGCCACCCCTCAGGATCGATTCACAGATGCCGCAACCCATCCCGCTAAAGGACCCCGAAAAGGAAATGCACCTGGTCAACCGTCGGCTTCTGGCCTGCGCTGCCATg                    <  2:226423/150‑1 (MQ=255)                                                                                                                            atcctgaggggtggcaataCGCG‑CGCGATCGGGCCGCGTATTGCCACCCCTCAGGATCGATTCACAGATGCCGCAACCCATCCCGCTaaa                                                                              >  1:65847‑M1/20‑90 (MQ=255)                                                                                                                            atcctgaggggtggcaataCGCG‑CGCGATCGGGCCGCGTATTGCCACCCCTCAGGATCGATTCACAGATGCCGCAACCCATCCCGCTaaa                                                                              <  2:65847‑M1/71‑1 (MQ=255)                                                                                                                                gggTTGCGTAGCATCCGCGGCCCGATCGCGC‑GCGTATTGCCACCCCTCAGGATCGATTCACAGATGCCGCAACCCATCCCGCTAAAGAACCACGAAAAGGAAAAGCACCTGGTCAACCGTCGGCTTCTGGCCTGCGCTGCCATGGTGTTc              >  2:69031/1‑150 (MQ=255)                                                                                                                                   ttGCGTAGCATCCGCGGCCCGATCGCGC‑GCGTCTTGCCACCCCTCAGGATCGATTCACAGATGCCGCAACCCATCCCGCTAAAGGACCACGAAAAGGAAAAGCACCTGGTCAACCGTCGGCTTCTGGCCTGCGCTGCCATGGTGTTCAGc           >  2:227907/1‑150 (MQ=255)                                                                                                                                   ttGCGTAGCATCCGCGGCCCGATCGCGC‑GCGTATTGCCACCCCTCAGGATCGATTCACAGATGCCGCAACCCATCCCGCTAAAGGACCACGAAAAGGAAAAGCACCTGGTCAACCGTCGGCTTCTGGCCTGCGCTGCCATGGTGTTCAGc           >  2:405089/1‑150 (MQ=255)                                                                                                                                       gTAGCATCCGCGGCCCGATCGCGC‑GCGTATTGCCACCCCTCAGGATCGATTCACAGATGCCGCAACCCATCCCGCTAAAGGACCACGAAAAGGAAAAGCACCTGGTCAACCGTCGGCTTCTGGCCTGCGCTGCCATGGTGTTCAGCCtgt       >  1:212214/1‑150 (MQ=255)                                                                                                                                           aataCGCG‑CGCGATCGGGCCGCGTATTGCCACCCCTCAGGATCGATTCACAGATGCCGCAACCCATCCCGCTAAAGGACCACgaaaa                                                                  >  1:83640‑M1/5‑87 (MQ=255)                                                                                                                                           aataCGCG‑CGCGATCGGGCCGCGTATTGCCACCCCTCAGGATCGATTCACAGATGCCGCAACCCATCCCGCTAAAGGACCACgaaaa                                                                  <  2:83640‑M1/83‑1 (MQ=255)                                                                                                                                            aTCCGCGGCCCGATCGCGC‑GCGTATTGCCACCCCTCAGGATCGATTCACAGATGCCGCAACCCATCCCGCTAAAGGACCACGAAAAGGAAAAGCACCTGGTCAACCGTCGGCTTCTGGCCTGCGCTGCCATGGTGTTCAGCCTGTGTGcc  >  2:279154/1‑150 (MQ=255)                                                                                                                                               |                                                                                                                                                    ACCCCTGACTCGTCATCATGACTCCGCAATGAACAAATCTTCATATTCCCCCTCAGCGCCCTGATCATGGGGCACACAGCCGATGCCAGCCAGCGGGCAGCCGGGGCTCGTCTTGAGGGTGCGGTACGGGTTGCGTAGCATCCGCGGCCCGATCGCGC‑GCGTATTGCCACCCCTCAGGATCGATTCACAGATGCCGCAACCCATCCCGCTAAAGGACCACGAAAAGGAAAAGCACCTGGTCAACCGTCGGCTTCTGGCCTGCGCTGCCATGGTGTTCAGCCTGTGTGCC  >  NC_002947/4269715‑4270003

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.