| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4269857 = | 18 (0.780) | 2 (0.090) | 4/242 | NT | 9.9% | intergenic (‑513/‑48) | PP_3740/mrdA‑I | MFS transporter/transpeptidase |
| ? | NC_002947 | 4269876 = | 19 (0.850) | intergenic (‑532/‑29) | PP_3740/mrdA‑I | MFS transporter/transpeptidase | |||||
ATGACTCCGCAATGAACAAATCTTCATATTCCCCCTCAGCGCCCTGATCATGGGGCACACAGCCGATGCCAGCCAGCGGGCAGCCGGGGCTCGTCTTGAGGGTGCGGTACGGGTTGCGTAGCATCCGCGGCCCGATCGCGC‑GCGTATTGCCACCCCTCAGGATCGATTCACAGATGCCGCAACCCATCCCGCTAAAGGACCACGAAAAGGAAAAGCACCTGGTCAACCGTCGGCTTCTGGCCTGCGCTGCCATGGTGTTCAGCCTGTGTGCCGTCTTGGTGGG > NC_002947/4269732‑4270014 | atGACTCCGCAATGAACAAATCTTCATATTCCCCCTCAGCGCCCTGATCATGGGGCACACAGCCGATGCCAGCCAGCGGGCAGCCGGGGCTCGTCTTGAGGGTGCGGTACGGGTTGCGTAGCATCCGCGGCCCGATCGCGC‑GCGTATTGc > 1:226423/1‑150 (MQ=255) ccGAAATGAACAAATCTGCATATTCCCCCCCTCCGCCCTGATCATGGGGCACACAGCAGATGCCAGGCAGCGGGCAGCCGCGGCTCGTCTTGACGGTGCGGTACGGTTTGCGTAGCATCCGCGGCCCGATCGCGC‑GCGTATGGCCAcccc < 2:129416/150‑1 (MQ=255) aaTCTTCATATTCCCCCTCAGCGCCCTGATCATGGGGCACACAGCCGATGCCAGCCAGCGGGCAGCCGGGGCTCGTCTTGAGGGTGCGGTACGGGTTGCGTAGCATCCGCGGCCCGATCGCGC‑GCGTATAGCCACCCCTCgggtgcgact < 2:596642/150‑8 (MQ=255) tatTCCCCCTCAGCGCCCTGATCATGGGGCACACAGCCGATGCCAGCCAGCGGGCAGCCGGGGCTCGTCTTGAGGGTGCGGTACGGGTTGCGTAGCATCCGCGGCCCGATCGCGC‑GCGTATTGCCACCCCTCAGGATCGATTCACAGATg > 1:209795/1‑150 (MQ=255) atTCCCCCTCAGCGCCCTGATCATGGGGCACACAGCCGATGCCAGCCAGCGGGCAGCCGGGGCTCGTCTTGAGGGTGCGGTACGGGTTGCGTAGCATCCGCGGCCCGATCGCGC‑GCGTATTGCCACCCCTCAGGATCGATTcaca > 1:378344/1‑145 (MQ=255) atTCCCCCTCAGCGCCCTGATCATGGGGCACACAGCCGATGCCAGCCAGCGGGCAGCCGGGGCTCGTCTTGAGGGTGCGGTACGGGTTGCGTAGCATCCGCGGCCCGAGCGCGC‑GCGTATTGCCACCCCTCAGGATCGATTcaca < 2:378344/145‑1 (MQ=255) gCACACAGCCGATGCCAGCCAGCGGGCAGCCGGGGCTCGTCTTGAGGGTGCGGTACGGGTTGCGTAGCATCCGCGGCCCGATCGCGC‑GCGTATTGCCACCCCTCAGGATCGATTCACAGATGCCGCAACCCATCCCGCTAAAGGACCACg > 1:140576/1‑150 (MQ=255) ttttcgtggtcctttagcgggatgggttgcggcatctgtgaatcgatcctgaggggtggcaatacgcggcccgatcgcgcgcgTAtt < 2:83640‑M2/4‑1 (MQ=255) ttttcgtggtcctttagcgggatgggttgcggcatctgtgaatcgatcctgaggggtggcaatacgcggcccgatcgcgcgcgTAtt > 1:83640‑M2/84‑87 (MQ=255) cagccagcGGGCAGCCGGGGCTCGTCTTGAGGGTGCGGTACGGGTTGCGTAGCATCCGCGGCCCGATCGCGC‑GCGTATTGCCACCCCTCAGGATCGATTCACAGATGCCGCAACCCATCCCGCTAAAGGACCACGAAAAGGAAAAGCAcc < 2:356406/150‑1 (MQ=255) agccagcGGGCAGCCGGGGCTCGTCTTGAGGGTGCGGTACGGGTTGCGTAGCATCCGCGGCCCGATCGCGC‑GCGTATTGCCACCCCTCAGGATCGATTCACAGATGCCGCAAc > 2:226269/1‑113 (MQ=255) agccagcGGGCAGCCGGGGCTCGTCTTGAGGGTGCGGTACGGGTTGCGTAGCATCCGCGGCCCGATCGCGC‑GCGTATTGCCACCCCTCAGGATCGATTCACAGATGCCGCAAc < 1:226269/113‑1 (MQ=255) agccagcGGGCAGCCGGGGCTCGTCTTGAGGGTGCGGTACGGGTTGCGTAGCATCCGCGGCCCGATCGCGC‑GCGTATTGCCACCCCTCAGGATCGATTCACAGATGCCGCAACCCATCCCGCTAAAGGACCACGAAAAGGAAAAGCACCt > 2:367965/1‑150 (MQ=255) gccagcGGGCAGCCGGGGCTCGTCTTGAGGGTGCGGTACGGGTTGCGTAGCATCCGCGGCCCGATCGCGC‑GCGTATTGCCACCCCTCAGGATCGATTCACAGATGCCGCAACCCATCCCGCTAAAGGACCACGAAAAGGAAAAGCACCTg < 2:209795/150‑1 (MQ=255) tttagcgggatgggttgcggcatctgtgaatcgatcctgaggggtggcaatacgcggcccgatcgcgcgcgTATTGCCACCCCTCAGGAt > 1:65847‑M2/72‑90 (MQ=255) tttagcgggatgggttgcggcatctgtgaatcgatcctgaggggtggcaatacgcggcccgatcgcgcgcgTATTGCCACCCCTCAGGAt < 2:65847‑M2/19‑1 (MQ=255) cGGTACGGGTTGCGTAGCATCCGCGGCCCGATCGCGC‑GCGTATTGCCACCCCTCAGGATCGATTCACAGATGCCGCAACCCATCCCGCTAAAGGACCCCGAAAAGGAAATGCACCTGGTCAACCGTCGGCTTCTGGCCTGCGCTGCCATg < 2:226423/150‑1 (MQ=255) atcctgaggggtggcaataCGCG‑CGCGATCGGGCCGCGTATTGCCACCCCTCAGGATCGATTCACAGATGCCGCAACCCATCCCGCTaaa > 1:65847‑M1/20‑90 (MQ=255) atcctgaggggtggcaataCGCG‑CGCGATCGGGCCGCGTATTGCCACCCCTCAGGATCGATTCACAGATGCCGCAACCCATCCCGCTaaa < 2:65847‑M1/71‑1 (MQ=255) gggTTGCGTAGCATCCGCGGCCCGATCGCGC‑GCGTATTGCCACCCCTCAGGATCGATTCACAGATGCCGCAACCCATCCCGCTAAAGAACCACGAAAAGGAAAAGCACCTGGTCAACCGTCGGCTTCTGGCCTGCGCTGCCATGGTGTTc > 2:69031/1‑150 (MQ=255) ttGCGTAGCATCCGCGGCCCGATCGCGC‑GCGTCTTGCCACCCCTCAGGATCGATTCACAGATGCCGCAACCCATCCCGCTAAAGGACCACGAAAAGGAAAAGCACCTGGTCAACCGTCGGCTTCTGGCCTGCGCTGCCATGGTGTTCAGc > 2:227907/1‑150 (MQ=255) ttGCGTAGCATCCGCGGCCCGATCGCGC‑GCGTATTGCCACCCCTCAGGATCGATTCACAGATGCCGCAACCCATCCCGCTAAAGGACCACGAAAAGGAAAAGCACCTGGTCAACCGTCGGCTTCTGGCCTGCGCTGCCATGGTGTTCAGc > 2:405089/1‑150 (MQ=255) gTAGCATCCGCGGCCCGATCGCGC‑GCGTATTGCCACCCCTCAGGATCGATTCACAGATGCCGCAACCCATCCCGCTAAAGGACCACGAAAAGGAAAAGCACCTGGTCAACCGTCGGCTTCTGGCCTGCGCTGCCATGGTGTTCAGCCtgt > 1:212214/1‑150 (MQ=255) aataCGCG‑CGCGATCGGGCCGCGTATTGCCACCCCTCAGGATCGATTCACAGATGCCGCAACCCATCCCGCTAAAGGACCACgaaaa > 1:83640‑M1/5‑87 (MQ=255) aataCGCG‑CGCGATCGGGCCGCGTATTGCCACCCCTCAGGATCGATTCACAGATGCCGCAACCCATCCCGCTAAAGGACCACgaaaa < 2:83640‑M1/83‑1 (MQ=255) aTCCGCGGCCCGATCGCGC‑GCGTATTGCCACCCCTCAGGATCGATTCACAGATGCCGCAACCCATCCCGCTAAAGGACCACGAAAAGGAAAAGCACCTGGTCAACCGTCGGCTTCTGGCCTGCGCTGCCATGGTGTTCAGCCTGTGTGcc > 2:279154/1‑150 (MQ=255) GGCCCGATCGCGC‑GCGTATTGCCACCCCTGAGGATCGATTCACAGATGCCGCAACCCATCCCGCTAAAGGACCACGAAAAGGAAAAGCACCTGGTCAACCGTCGGCTTCTGGCCTGCGCTGCCATGGTGTTCAGCCTGTGTGCCGTCTTg > 2:91736‑M1/1‑150 (MQ=255) gATCGCGC‑GCGTATTGCCACCCCTCAGGATCGATTCACAGATGCCGCAACCCATCCCGCTAAAGGACCACGAAAAGGAAAAGCACCTGGTCAACCGTCGGCTTCTGGCCTGCGCTGCCATGGTGTTCAGCCTGTGTGCCGTCTTGGTggg < 1:405089/150‑1 (MQ=255) | ATGACTCCGCAATGAACAAATCTTCATATTCCCCCTCAGCGCCCTGATCATGGGGCACACAGCCGATGCCAGCCAGCGGGCAGCCGGGGCTCGTCTTGAGGGTGCGGTACGGGTTGCGTAGCATCCGCGGCCCGATCGCGC‑GCGTATTGCCACCCCTCAGGATCGATTCACAGATGCCGCAACCCATCCCGCTAAAGGACCACGAAAAGGAAAAGCACCTGGTCAACCGTCGGCTTCTGGCCTGCGCTGCCATGGTGTTCAGCCTGTGTGCCGTCTTGGTGGG > NC_002947/4269732‑4270014 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |