| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 6032840 | 22 (0.950) | 4 (0.240) | 4/184 | NT | 19.4% | intergenic (+48/+88) | dppA‑IV/PP_5284 | dipeptide transport protein/hypothetical protein |
| ? | NC_002947 | = 6032856 | 17 (1.000) | intergenic (+64/+72) | dppA‑IV/PP_5284 | dipeptide transport protein/hypothetical protein | |||||
AGCAGCAGGCGCTGTGGGTGCCACTGGCGCACCCGACGGCGGCGACCTTGCTGCGCCAAGGCGTCGAGGGGTACCAGGTGAGCCCGTTCGGGCGGCTGGATTTCAGCAAGGTGACGGTGACCAAGTAAGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGTAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/6032665‑6032840‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggtaaacccgctcctacaggggtagcgTCAACTGCCAGGCTGGCGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCTTACTTGGTCACCGTCACCTTGCTGAAATCCAGCCGCCCGAACGGGCTCACCTGGTACCCCTCGACGCCTTGGCGCAGCAAGG < NC_002947/6032856‑6032710 AGCAGCAGGCGCTGTGGGTGCCACTGGCGCACCCGACGGCGGCGACCTTGCTGCGCCAAGGCGTCGAGGGGTACCAGGTGAGCCCGTTCGGGCTGCTGGATTTCAGCAAGGTGACGGTGACCAAGTAAGCCTGTACCGGCCTCTTCGCGG < 2:545849/150‑1AGCAGCAGGCGCTGTGGGTGCCACTGGCGCACCCGACGGCGGCGACCTTGCTGCGCCAAGGCGTCGAGGGGTACCAGGTGAGCCCGTTCGGGCGGCTGGATTTCAGCAAGGTGACGGTGACCAAGTAAGCCTGTACCGGCCTCTTCGCGG < 1:2120/150‑1 CAGGCGCTGTGGGTGCCACTGGCGCACCCGACGGCGGCGACCTTGCTGCGCCAAGGCGTCGAGGGGTACCAGGTGAGCCCGTTCGGGCGGCTGGATTTCAGCAAGGTGACGGTGACCAAGTAAGCCTGTACCGGCCTCTTCGCGGGTAAA > 1:522449/1‑150 GCGCTGTGGGTGCCACTGGCGCACCCGACGGCGGCGACCTTGCTGCGCCAAGGCGTCGAGGGGTACCAGGTGAGCCCGTTCGGGCGGCTGGATTTCAGCAAGGTGACGGTGACCAAGTAAGCCTGTACCGGCCTCTTCGCGGGTAAACCC > 1:221459/1‑150 TGCCACTGGCGCACCCGACGGCGGCGACCTTGCTGCGCCAAGGCGTCGAGGGGTACCAGGTGAGCCCGTTCGGGCGGCTGGATTTCAGCAAGGTGACGGTGACCAAGTAAGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAG < 1:250197/150‑1 GCCACTGGCGCACCCGACGGCGGCGACCTTGCTGCGCAAAGGCGTCGAGGGGTACCAGGTGAGCCCGTTCGGGCGGCTGGATTTCAGCAAGGTGACGGTGACCAAGTAAGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGG < 2:167979/150‑1 CCGACGGCGGCGACCTTGCTGCGCCAAGGCGTCGAGGGGTACCAGGTGAGCCCGTTCGGGCGGCTGGATTTCAGCAAGGTGACGGTGACCAAGTAAGCCTGTACCGGCCTCTTCGCGGGTAAAC > 2:544804/1‑124 CCGACGGCGGCGACCTTGCTGCGCCAAGGCGTCGAGGGGTACCAGGTGAGCCCGTTCGGGCGGCTGGATTTCAGCAAGGTGACGGTGACCAAGTAAGCCTGTACCGGCCTCTTCGCGGGTAAAC < 1:544804/124‑1 CCTTGCTGCGCCAAGGCGTCGAGGGGTACCAGGTGAGCCCGTTCGGGCGGCTGGATTTCAGCAAGGTGACGGTGACCAAGTAAGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAG > 2:403449/1‑123 CCTGGCTGCGCCAAGGCGTCGAGGGGTACCAGGTGAGCCCGTTCGGGCGGCTGGATTTCAGCAAGGTGACGGTGACCAAGTAAGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAG < 1:403449/123‑1 CCCGTTCGGGCGGCTGGATTTCAGCAAGGTGACGGTGACCAAGTAAGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGTAGCGTCAACTGCCAGGCTGGCGCTACCC > 2:610721/1‑118 CCCGTTCGGGCGGCTGGATTTCAGCAAGGTGACGGTGACCAAGTAAGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGTAGCGTCAACTGCCAGGCTGGCGCTACCC < 1:610721/118‑1 GGATTTCAGCAAGGTGACGGTGACCAAGTAAGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGTAGCGTCAACTGCCAGGCTGGCGCTAC < 1:21879/101‑1 GGATTTCAGCAAGGTGACGGTGACCAAGTAAGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGTAGCGTCAACTGCCAGGCTGGCGCTAC > 2:21879/1‑101 AGCAAGGTGACGGTGACCAAGTAAGCCTGTACCGGCCCTTTCGCGGG < 1:467147/47‑1 AGCAAGGTGACGGTGACCAAGTAAGCCTGTACCGGCCCTTTCGCGGG > 2:467147/1‑47 CGGGTAAACCCGCTCCTACAGGGGTAGCGTCAACTGCCAGGCTGGCGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCTTACTTGGTCACCGTCACCTTGCTGAAATCCAGCCGCCCGAACGGGCTCACCTGGTA < 1:324013/150‑1 CCGCTCCTACAGGGGTAGCGTCAACTGCCAGGCTGGCGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCTTACTTGGTCACCGTCACCTTGCTGAAATCCAGCCGCCCGAACGGGCTCACCTGGTACCCCTCGAC > 2:134613/1‑150 CCGCTCCTACAGGGGTAGCGTCAACTGCCAGGCTGGCGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCTTAC < 2:428929/88‑1 CCGCTCCTACAGGGGTAGCGTCAACTGCCAGGCTGGCGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCTTAC > 1:428929/1‑88 CTCCTACAGGGGTAGCGTCAACTGCCAGGCTGGCGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCTTACTTGGTCACCGTCACCTTGCTGAAATCCAGCCGC > 1:561035/1‑118 CTCCTACAGGGGTAGCGTCAACTGCCAGGCTGGCGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCTTACTTGGTCACCGTCACCTTGCTGAAATCCAGCCGC < 2:561035/118‑1 CCTACAGGGGTAGCGTCAACTGCCAGGCTGGCGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCTTACTTGGTCACCGTCACCTTGCTGAAATCCAGCCGCCCGAACGGGCTCACCTGGTACCCCTCGACGCCTT < 2:492607/150‑1 GGGGTAGCGTCAACTGCCAGGCTGGCGCTACCCCTGTAGGAGTGGGTTTACCCGCGAAGAGGCCGGTACAGGCTTACTTGGTCACCGTCACCTTGCTGAAATCCAGCCGCCCGAACGGGCTCACCTGGTCCCCCTCGACAACTTGGGGCA > 2:342793/1‑150 GGTAGCGTCAACTGCCAGGCTGGCGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCTTACTTGGTCACCGTCACCTTGCTGAAATCCAGCCGCCCGAACGGGCTCACCTGGTACCCCTCGACGCCTTGGCGCAGC > 2:489518/1‑150 GTCAACTGCCAGGCTGGCGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCTTACTTGGTCACCGTCACCTTGCTGAAATCCAGCCGCCCGAACGGGCTCACCTGGTACCCCTCGACGCCTTGGCGCAGCAAGG < 2:323895/148‑1 GTCAACTGCCAGGCTGGCGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCTTACTTGGTCACCGTCACCTTGCTGAAATCCAGCCGCCCGAACGGGCTCACCTGGTACCCCTCGACGCCTTGGCGCAGCAAGG > 1:323895/1‑148 AGCAGCAGGCGCTGTGGGTGCCACTGGCGCACCCGACGGCGGCGACCTTGCTGCGCCAAGGCGTCGAGGGGTACCAGGTGAGCCCGTTCGGGCGGCTGGATTTCAGCAAGGTGACGGTGACCAAGTAAGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGTAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/6032665‑6032840‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggtaaacccgctcctacaggggtagcgTCAACTGCCAGGCTGGCGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCTTACTTGGTCACCGTCACCTTGCTGAAATCCAGCCGCCCGAACGGGCTCACCTGGTACCCCTCGACGCCTTGGCGCAGCAAGG < NC_002947/6032856‑6032710 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |