| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 6032840 | 22 (0.950) | 4 (0.240) | 4/184 | NT | 19.4% | intergenic (+48/+88) | dppA‑IV/PP_5284 | dipeptide transport protein/hypothetical protein |
| ? | NC_002947 | = 6032856 | 17 (1.000) | intergenic (+64/+72) | dppA‑IV/PP_5284 | dipeptide transport protein/hypothetical protein | |||||
CCTTGCTGCGCCAAGGCGTCGAGGGGTACCAGGTGAGCCCGTTCGGGCGGCTGGATTTCAGCAAGGTGACGGTGACCAAGTAAGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGTAGCGCCAGCCTGGCA‑GTTGACGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAG‑T‑ACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTCCCCATCACCAATGATGATGTGATCCAGCA > NC_002947/6032710‑6032998 | ccTTGCTGCGCCAAGGCGTCGAGGGGTACCAGGTGAGCCCGTTCGGGCGGCTGGATTTCAGCAAGGTGACGGTGACCAAGTAAGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGTAGCGCCAGCCTGGCA‑GTTGAc > 1:323895‑M2/1‑147 (MQ=255)ccTTGCTGCGCCAAGGCGTCGAGGGGTACCAGGTGAGCCCGTTCGGGCGGCTGGATTTCAGCAAGGTGACGGTGACCAAGTAAGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGTAGCGCCAGCCTGGCA‑GTTGAc < 2:323895‑M2/148‑2 (MQ=255) gctgcGCCAAGGCGTCGAGGGGTACCAGGTGAGCCCGTTCGGGCGGCTGGATTTCAGCAAGGTGACGGTGACCAAGTAAGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGTAGCGCCAGCCTGGCA‑GTTGAcgctacc > 2:489518‑M2/1‑143 (MQ=255) tgcCCCAAGTTGTCGAGGGGGACCAGGTGAGCCCGTTCGGGCGGCTGGATTTCAGCAAGGTGACGGTGACCAAGTAAGCCTGTACCGGCCTCTTCGCGGGTAAACCCACTCCTACAGGGGTAGCGCCAGCCTGGCA‑GTTGAcgctacccc > 2:342793‑M2/1‑141 (MQ=255) aaGGCGTCGAGGGGTACCAGGTGAGCCCGTTCGGGCGGCTGGATTTCAGCAAGGTGACGGTGACCAAGTAAGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGTAGCGCCAGCCTGGCA‑GTTGAcgctacccctgtagg < 2:492607‑M2/150‑16 (MQ=255) gTCGAGGGGTACCAGGTGAGCCCGTTCGGGCGGCTGGATTTCAGCAAGGTGACGGTGACCAAGTAAGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGTAGCGCCAGCCTGGCA‑GTTGAcgctacccctgtaggagcgg > 2:134613‑M2/1‑130 (MQ=255) tACCAGGTGAGCCCGTTCGGGCGGCTGGATTTCAGCAAGGTGACGGTGACCAAGTAAGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGTAGCGCCAGCCTGGCA‑GTTGAcgctacccctgtaggagcgggtttacccg < 1:324013‑M2/150‑30 (MQ=255) aGCCCGTTCGGGCGGCTGGATTTCAGCAAGGTGACGGTGACCAAGTAAGCCTGTATCGTCTTCTTCGCGGGTAAACCCGCTCCTACAGGGGTAGCGCCAGCCTGGCA‑GTTGACGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGc < 2:545220/150‑1 (MQ=255) gcggcTGGATTTCAGCAAGGTGACGGTGACCAAGTAAGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGTAGCGCCAGCCTGGCA‑GTTGAcgctacccctgtaggag < 2:561035‑M2/118‑18 (MQ=255) gcggcTGGATTTCAGCAAGGTGACGGTGACCAAGTAAGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGTAGCGCCAGCCTGGCA‑GTTGAcgctacccctgtaggag > 1:561035‑M2/1‑101 (MQ=255) ggATTTCAGCAAGGTGACGGTGACCAAGTAAGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGTAGCGCCAGCCTGGCA‑GTTGACGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATaa > 1:434914/1‑150 (MQ=255) aGGTGACGGTGACCAAGTAAGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGTAGCGCCAGCCTGGCA‑GTTGACGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAG‑T‑a < 1:492607/150‑1 (MQ=255) gacggtgacCAAGTAAGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGTAGCGCCAGCCTGGCA‑GTTGACGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAG‑T‑ACTcc < 2:324013/150‑1 (MQ=255) gTAAGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGTAGCGCCAGCCTGGCA‑GTTGAcgctacccctgtaggagcgg < 2:428929‑M2/88‑21 (MQ=255) gTAAGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGTAGCGCCAGCCTGGCA‑GTTGAcgctacccctgtaggagcgg > 1:428929‑M2/1‑68 (MQ=255) gTAAGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGTAGCGCCAGCCTGGCA‑GTTGACGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAG‑T‑ACTCCCTCAGACCACaa < 2:434914/150‑1 (MQ=255) aaGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGTAGCGCCAGCCTGGCA‑GTTGACGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAG‑T‑ACTCCCTCAGACCACAATc > 1:208590/1‑150 (MQ=255) catgtgCCGGCCTCTGCGGGGTTTAATGCGCTCGTCCAGGGCTAGGGGCAGCATGGCC‑GTTTAGGCTACCCCTGTAGCACCGCGTTTACCCGAGAAAGGGCCCGTACTGACCCTACAAGGCTCTCAG‑T‑ACTCCCTCAGACCACAATCCAc < 2:262485/148‑1 (MQ=255) ccTCTTCGCGGGGAAACCCGCTCCTACAGGGGCAGCGCCAGCCTGGCA‑GTTGACGCTACCCCTGTAACAGGGCGTTTACCCGCGAGCGGGCCCGTAATG‑‑GTTACACGACAGCCAGATGACTCCCTCAGACCACAATCCACCCATGCTCGa > 1:444850/1‑150 (MQ=255) cgGGTAAACCCGCTCCTACAGGGGTAGCGCCAGCCTGGCA‑GTTGACGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAG‑T‑ACTCCCTCAGACCACAATCCACCCATGCTc < 1:487146/140‑1 (MQ=255) cgGGTAAACCCGCTCCTACAGGGGTAGCGCCAGCCTGGCA‑GTTGACGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAG‑T‑ACTCCCTCAGACCACAATCCACCCATGCTc > 2:487146/1‑140 (MQ=255) ccGCTCCTACAGGGGTAGCTCCAGCCTGGCA‑GTTGACGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAG‑T‑ACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTcc > 2:517211/1‑150 (MQ=255) ccGCTCCTACAGGGGTAGCGTCA‑ACTGCCAGGCTGGCGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACTGACCCTATAAGGCTCTCAG‑T‑ACTCCCTCAGACCACAATCCAc < 2:277382/123‑1 (MQ=1) ccGCTCCTACAGGGGTAGCGTCA‑ACTGCCAGGCTGGCGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACTGACCCTATAAGGCTCTCAG‑T‑ACTCCCTCAGACCACAATCCAc > 1:277382/1‑123 (MQ=1) tACAGGGGTAGCGCCAGCCTGGCA‑GTTGACGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAG‑T‑ACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTCCCCATCAc > 1:287961/1‑150 (MQ=255) gggTAGCGCCAGCCTGGCA‑GTTGAcgctacccctgtaggagcgggtttacccgcgaagaggccggtacaggcttacttggtcaccgtcaccttgctgaaatccagccgcccgaacggg < 1:610721‑M2/118‑95 (MQ=255) gggTAGCGCCAGCCTGGCA‑GTTGAcgctacccctgtaggagcgggtttacccgcgaagaggccggtacaggcttacttggtcaccgtcaccttgctgaaatccagccgcccgaacggg > 2:610721‑M2/1‑24 (MQ=255) gTAGCGCCAGCCTGGCA‑GTTGAcgctacccctgtaggagcgggtttacccgcgaagaggccggtacaggcttacttggtcaccgtcaccttgctgaaatcc > 2:21879‑M2/1‑22 (MQ=255) gTAGCGCCAGCCTGGCA‑GTTGAcgctacccctgtaggagcgggtttacccgcgaagaggccggtacaggcttacttggtcaccgtcaccttgctgaaatcc < 1:21879‑M2/101‑80 (MQ=255) ccAGCCTGGCA‑GTTGACGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAG‑T‑ACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTCCCCATCACCAATGATGAtgtg > 2:520541/1‑150 (MQ=255) aGCATGGCA‑GTTGACCCTACCATGGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAG‑T‑ACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTCCCCATCACCAATGATGATGTGAt < 2:444850/150‑1 (MQ=255) gCCTGGCA‑GTTGACGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAG‑T‑ACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTCCCCATCACCAATGATGATGTGATc < 2:14547/150‑1 (MQ=255) gCA‑GTTGACGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAG‑T‑ACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTCCCCATCACCAATGATGATGTGATCCAGCa > 1:558252/1‑150 (MQ=255) | CCTTGCTGCGCCAAGGCGTCGAGGGGTACCAGGTGAGCCCGTTCGGGCGGCTGGATTTCAGCAAGGTGACGGTGACCAAGTAAGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGTAGCGCCAGCCTGGCA‑GTTGACGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAG‑T‑ACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTCCCCATCACCAATGATGATGTGATCCAGCA > NC_002947/6032710‑6032998 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |