New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1053240 =	29 (1.250)	5 (0.230)	3/240	NT	15.9%	coding (130/1428 nt)	PP_0910	hypothetical protein
	?	NC_002947	1053338 =	25 (1.130)					coding (32/1428 nt)	PP_0910	hypothetical protein

CCCTCTGCTGCTGGCCTTGGCCTTGGCCGCCTGTGACGACGCCCCGCGCTTCACCCACGCCGAGCCCGGCGAAGCGTTGTCGGGTGGCCAGGCGA‑‑CCG‑‑TGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1053343‑1053240 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagcAGAGGGGGGAGTCGGGACAGCGACAAGGACATCGAGAATCCTGGGCGTGAGCGAAAAACCGGCGTGCAGCTTAGCAGGCCCAGGATCATTGAA  >  NC_002947/1053338‑1053430                                                                                                                                                                                                           CCCTCTGCTGCTGGCCTTGGCCTTGGCCGCCTGTGACGACGCCCCGCGCTTCACCCACGCCGAGCCCGGCGAAGCGTTGTCGGGTGGCCAGGCGA‑‑CCG‑‑TGCAGCAGAGGGGGGAGTCGGGACAGCGACAAGGACATCGAGAATCCTGGGC                                                 >  2:10910/1‑150    TCTGCTGCTGGCCTTGGCCTTGGCCGCCTGTGACGACGCCCCGCGCTTCACCCACGCCGAGCCCGGCGAAGCGTTGTCGGGTGGCCAGGCGA‑‑CCG‑‑TGCAGCAGAGGGGGGAGTCGGGACAGCGACAAGGACATCGAGAATCCTGGGCGTG                                              >  1:40172/1‑150                         GGCCGCCTGTGACGACGCCCCGCGCTTCACCCACGCCGAGCCCGGCGAAGCGTTGTCGGGTGGCCAGGCTA‑‑CCG‑‑TGCAGCAGAGGGGGGAGTCGGGACAGCGACAAGGACATCGAGAATCCTGGGCGTGAGCGAAAAACCGGCGTGCAGC                         <  1:10910/150‑1                                                                GCCCGGCGAAGCGTTGTCGGGTGGCCAGGCCAAGGCC‑‑AGCAGCAGAGGGGGGAGTCGGGACAGCGACAAGGACATCGAGAATCCTGGGCGTGAGCGAAAAACCGGCGTGCAGCTTAGCAGGCCCAGGATCATTGAA  >  1:531376/1‑136                                                                GCCCGGCGAAGCGTTGTCGGGTGGCCAGGCCA‑‑AGGCCAGCAGCAGAGGGGGGAGTCGGGACAGCGACAAGGACATCGAGAATCCTGGGCGTGAGCGAAAAACCGGCGTGCAGCTTAGCAGGCCCAGGATCATTGAA  <  2:531376/136‑1                                                                                                                                                                                                           CCCTCTGCTGCTGGCCTTGGCCTTGGCCGCCTGTGACGACGCCCCGCGCTTCACCCACGCCGAGCCCGGCGAAGCGTTGTCGGGTGGCCAGGCGA‑‑CCG‑‑TGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1053343‑1053240 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagcAGAGGGGGGAGTCGGGACAGCGACAAGGACATCGAGAATCCTGGGCGTGAGCGAAAAACCGGCGTGCAGCTTAGCAGGCCCAGGATCATTGAA  >  NC_002947/1053338‑1053430

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.