New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2907209	28 (1.210)	3 (0.140)	3/238	NT	9.6%	coding (217/1359 nt)	PP_2558	outer membrane efflux protein
	?	NC_002947	= 2907231	30 (1.360)					coding (195/1359 nt)	PP_2558	outer membrane efflux protein

GCTGGCCCTGGCGGTACTCGGCCATCTTCTGTTTGTTGAACAACGGCTGGCGCAGGCGCACGTTGGCGCCCTTGGAGTCATAGTCGAGGTCATTGTCCTGGCCATTCTGGCGCTGGCTGCCATTGACCTGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACGGCAGCGCGGTAGATCGGGCCCTGGTACTGCAACAGGTCCCAGGCTTGCTTCAGGTCCATGGCACTGGCCTGTACGGCA  >  NC_002947/2907062‑2907357                                                                                                                                                    |                                                                                                                                                     gCTGGCCCTGGCGGTACTCGGCCATCTTCTGTTTGTTGAACAACGGCTGGCGCAGGCGCACGTTGGCGCCCTTGGAGTCATAGTCGAGGTCATTGTCCTGGCCATTCTGGCGCTGGCTGCCATTGACCTGGTTGAAGTAGGCCGAGGCGt                                                                                                                                                    >  1:309849/1‑150 (MQ=255)   tGGCCCTGGCGGTACTCGGCCATCTTCTGTTTGTTGAACAACGGCTGGCGCAGGCGCACGTTGGCGCCCTTGGAGTCATAGTCGAGGTCATTGTCCTGGCCATTCTGGCGCTGGCTGCCATTGACCTGGTTGAAGTAGGCCGAGGCGTTg                                                                                                                                                  >  1:390865/1‑150 (MQ=255)           gCGGTACTCGGCCATCTTCTGTTTGTTGAACAACGGCTGGCGCAGGCGCACGTTGGCGCCCTTGGAGTCATAGTCGAGGTCATTGTCCTGGCCATTCTGGCGCTGGCTGCCATTGACCTGGTTGAAGTAGGCCGAGGCGTTGATCTGCgg                                                                                                                                          >  2:401162/1‑150 (MQ=255)             ggTACTCGGCCATCTTCTGTTTGTTGAACAACGGCTGGCGCAGGCGCACGTTGGCGCCCTTGGAGTCATAGTCGAGGTCATTGTCCTGGCCATTCTGGCGCTGGCTGCCATTGACCTGGTTGAAGTAGGCCGAGGCGTTGATCTGCGgca                                                                                                                                        >  2:303892/1‑150 (MQ=255)                       cATCTTCTGTTTGTTGAACAACGGCTGGCGCAGGCGCACGTTGGCGCCCTTGGAGTCATAGTCGAGGTCATTGTCCTGGCCATTCTGGCGCTGGCTGCCATTGACCTGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGgc                                                                                                                              <  1:525445‑M2/150‑3 (MQ=255)                        aTCTTCTGTTTGTTGAACAACGGCTGGCGCAGGCGCACGTTGGCGCCCTTGGAGTCATAGTCGAGGTCATTGTCCTGGCCATTCTGGCGCTGGCTGCCATTGACCTGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGgcc                                                                                                                             >  2:281164‑M2/1‑147 (MQ=255)                                    ttgAACAACGGCTGGCGCAGGCGCACGTTGGCGCCCTTGGAGTCATAGTCGAGGTCATTGTCCTGGCCATTCTGGCGCTGGCTGCCATTGACCTGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGgcg                                                                                                                 >  2:578125/1‑150 (MQ=255)                                    ttgAACAACGGCTGGCGCAGGCGCACGTTGGCGCCCTTGGAGTCATAGTCGAGGTCATTGTCCTGGCCATTCTGGCGCTGGCTGCCATTGACATGGTTTAAGGAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGgcg                                                                                                                 <  2:457811/150‑1 (MQ=255)                                      gAACAACGGCTGGCGCAGGCGCACGTTGGCGCCCTTGGAGTCATAGTCGAGGTCATTGTCCTGGCCATTCTGGCGCTGGCTGCCATTGACCTGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGcgcg                                                                                                               <  2:309849/150‑1 (MQ=255)                                       aacaacGGCTGGCGCAGGCGCACGTTGGCGCCCTTGGAGTCATAGTCGAGGGCATTGTCCTGGCCATTCTGGCGCTGGCTGCCATTGACCTGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCgg                                                                                                              >  2:92117/1‑150 (MQ=255)                                          aacGGCTGGCGCAGGCGCACGTTGGCGCCCTTGGAGTCATAGTCGAGGTCATTGTCCTGGCCATTCTGGCGCTGGCTGCCATTGACCTGGTTGCAGTAGGCCGAGGCcggcctgctgccgcagatcaacgcctcggcctacttcaaccag                                                                                                           <  2:399772‑M1/150‑44 (MQ=255)                                                            aCGTTGGCGCCCTTGGAGTCATAGTCGAGGTCATTGTCCTGGCCATTCTGGCGCTGGCTGCCATTGACCTGGTTGAAGTAGGCCGAGGCcggcctgctgccgcagatcaacgcctcggcc                                                                                                                       <  1:303438‑M1/120‑32 (MQ=255)                                                            aCGTTGGCGCCCTTGGAGTCATAGTCGAGGTCATTGTCCTGGCCATTCTGGCGCTGGCTGCCATTGACCTGGTTGAAGTAGGCCGAGGCcggcctgctgccgcagatcaacgcctcggcc                                                                                                                       >  2:303438‑M1/1‑89 (MQ=255)                                                            aCGTTGGCGCCCTTGGAGTCATAGTCGAGGTCATTGTCCTGGCCATTCTGGCGCTGGCTGCCATTGACCTGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGtttt                                                                                         >  1:394596/1‑150 (MQ=255)                                                                      ccTTGGAGTCATAGTCGAGGTCATTGTCCTGGCCATTCTGGCGCTGGCTGCCATTGACCTGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACgg                                                                               <  2:525445/150‑1 (MQ=255)                                                                      ccTTGGAGTCATAGTCGAGGTCATTGTCCTGGCCATTCTGGCGCTGGCTGCCATTGACCTGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACgg                                                                               >  1:404537/1‑150 (MQ=255)                                                                              tCATAGTCGAGGTCATTGTCCTGGCCATTCTGGCGCTGGCTGCCATTGACCTGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACGGCAGCGCgg                                                                       >  2:444936/1‑150 (MQ=255)                                                                                    tCGAGGTCATTGTCCTGGCCATTCTGGCGCTGGCTGCCATTGACCTGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCAATGGAGCCCCTCTCATGATCGGCTGGTGTTTTATGCACGGGAGCGCGGTAGATc                                                                 >  2:529607/1‑150 (MQ=255)                                                                                           cATTGTCCTGGCCATTCTGGCGCTGGCTGCCATTGACCTGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACGGCAGCGCGGTAGATCGGGCCCt                                                          <  1:92117/150‑1 (MQ=255)                                                                                            aTTGTCCTGGCCATTCTGGCGCTGGCTGCCATTGACCTGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACGGCAGCGCGGTAGATCGGGCCCTg                                                         >  1:309207/1‑150 (MQ=255)                                                                                                 ccTGGCCATTCTGGCGCTGGCTGCCATTGACCTGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACGGCAGCGCGGTAGATCGGGCCCTGGTACt                                                    <  1:401162/150‑1 (MQ=255)                                                                                                   tGGCCATTCTGGCGCTGGCTGCCATTGACCTGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACGGCAGCGCGGTAGATCGGGCCCTGGTACTGc                                                  >  2:610347/1‑150 (MQ=255)                                                                                                            tGGCGCTGGCTGCCATTGACCTGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACGGCAGCGCGGTAGATCGGGCCCTGGTACTGCAACAGGTcc                                         <  2:390865/150‑1 (MQ=255)                                                                                                                          aTTGACCTGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACGGCAGCGCGGTAGATCGGGCCCTGGTACTGCACCAGGTCCCAGGCTTGCTTCAg                           >  2:79046/1‑150 (MQ=255)                                                                                                                          aTTGACCTGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACGGCAGCGCGGTAGATCGGGCCCTGGTACTGCAACAGGTCCCAGGCTTGCTTCAg                           >  1:458404/1‑150 (MQ=255)                                                                                                                          aTTGACCTGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACGGCAGCGCGGTAGATCGGGCCCTGGTACTGCAACAGGTCCCAGGCTTGCTTCAg                           <  1:529607/150‑1 (MQ=255)                                                                                                                                cTGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCTGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACGGCAGCGCGGTTGATCGGGCCTTTGTTTTGCCACAGGTCCCCGGCTTTCTTCAGGTCCAt                     >  2:79590/1‑150 (MQ=255)                                                                                                                                cTGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGgcctcggcctactgcaaccaggtcaatggcagccagcgccagaatggccaggacaatgacctcgactatgactccaagggcgccaacgtgcgcctgcgccagccgtt                     <  2:399772‑M2/150‑108 (MQ=255)                                                                                                                                cTGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACGGCAGCGCGGTAGATCGGGCCCTGGTACTGCAACAGGTCCCAGGCTTGCTTCAGGTCCAt                     >  2:225403/1‑150 (MQ=255)                                                                                                                                 tGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACGGCAGCGCGGTAGATCGGGCCCTGGTACTGCAACAGGTCCCAGGCTTGCTTCAGGTCCATg                    >  2:152159/1‑150 (MQ=255)                                                                                                                                 tGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACGGCAGCGCGGTAGATCGGGCCCTGGTACTGCAACAGGTCCCAGGCTTGCTTCAGGTCCATg                    <  2:441225/150‑1 (MQ=255)                                                                                                                                   gTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACGGCAGCGCGCTAGATCGGGCCCTGGTACTGCAACAGGTCCCAGGCTTGCTTCAGGTCCATGGc                  >  1:587386/1‑150 (MQ=255)                                                                                                                                        aGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGTCGCTGGTCCCTTTGTCGCTACCGGCTTGTTTTTCATGCACGGCAGCGCGGTAGATCGGGCCCTGGTACTGCAACAGGTCCCAGGCTTGCTTCAGGTCCATGGCACTgg             <  1:444936/150‑1 (MQ=255)                                                                                                                                         gTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACGGCAGCGCGGTAGATCGGGCCCTGGTACTGCAACAGGTCCCAGGCTTGCTTCAGGTCCATGGCACTGGc            <  1:578125/150‑1 (MQ=255)                                                                                                                                           aGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACGGCAGCGCGGTAGATCGGGCCCTGGTACTGCAACAGGTCCCAGGCTTGCTTCAGGTCCATGGCACTGGCCt          <  1:303892/150‑1 (MQ=255)                                                                                                                                            ggCCGAGGCGTTGATCTGCGGCAGCAGGCCGgcctcggcctacttcaaccaggtcaatggcagccagcgccagaatggccaggacaatgacctcgactatgactccaagggcgccaacgt                                       <  1:303438‑M2/120‑90 (MQ=255)                                                                                                                                            ggCCGAGGCGTTGATCTGCGGCAGCAGGCCGgcctcggcctacttcaaccaggtcaatggcagccagcgccagaatggccaggacaatgacctcgactatgactccaagggcgccaacgt                                       >  2:303438‑M2/1‑31 (MQ=255)                                                                                                                                            ggCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACGGCAGCGCGGTAGATCGGGCCCTGGTACTGCAACAGGTCCCAGGCTTGCTTCAGGTCCATGGCACTGGCCTg         <  2:394596/150‑1 (MQ=255)                                                                                                                                                 aGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTTTTTTTTTTTTTCGCGGTAGATCGGGCCCTGGTACTGCAACAGGTCCCAGGCTTGCTTCAGGTCCATGGCACTGGCCTGTACgg    >  2:610727/1‑150 (MQ=255)                                                                                                                                                  ggccggcctgctgccgcagatcaacgcctcggcctacttcaaccaggtcaatggcagccagcgccagaatggccaggacaatgacctcgactatgactccaagggcgccaacgtgcgcctgcgccagccgttgttcaacaaacagaagat   >  2:281164‑M1/1‑3 (MQ=255)                                                                                                                                                   gccggcctgctgccgcagatcaacgcctcggcctacttcaaccaggtcaatggcagccagcgccagaatggccaggacaatgacctcgactatgactccaagggcgccaacgtgcgcctgcgccagccgttgttcaacaaacagaagatg  <  1:525445‑M1/150‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                     GCTGGCCCTGGCGGTACTCGGCCATCTTCTGTTTGTTGAACAACGGCTGGCGCAGGCGCACGTTGGCGCCCTTGGAGTCATAGTCGAGGTCATTGTCCTGGCCATTCTGGCGCTGGCTGCCATTGACCTGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACGGCAGCGCGGTAGATCGGGCCCTGGTACTGCAACAGGTCCCAGGCTTGCTTCAGGTCCATGGCACTGGCCTGTACGGCA  >  NC_002947/2907062‑2907357

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.