New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2907209	28 (1.210)	3 (0.140)	3/238	NT	9.6%	coding (217/1359 nt)	PP_2558	outer membrane efflux protein
	?	NC_002947	= 2907231	30 (1.360)					coding (195/1359 nt)	PP_2558	outer membrane efflux protein

CATCTTCTGTTTGTTGAACAACGGCTGGCGCAGGCGCACGTTGGCGCCCTTGGAGTCATAGTCGAGGTCATTGTCCTGGCCATTCTGGCGCTGGCTGCCATTGACCTGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACGGCAGCGCGGTAGATCGGGCCCTGGTACTGCAACAGGTCCCAGGCTTGCTTCAGGTCCATGGCACTGGCCTGTACGGCAACTCCCAGCAGGCACACCATCAG  >  NC_002947/2907084‑2907380                                                                                                                                                    |                                                                                                                                                      cATCTTCTGTTTGTTGAACAACGGCTGGCGCAGGCGCACGTTGGCGCCCTTGGAGTCATAGTCGAGGTCATTGTCCTGGCCATTCTGGCGCTGGCTGCCATTGACCTGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGgc                                                                                                                                                     <  1:525445‑M2/150‑3 (MQ=255)  aTCTTCTGTTTGTTGAACAACGGCTGGCGCAGGCGCACGTTGGCGCCCTTGGAGTCATAGTCGAGGTCATTGTCCTGGCCATTCTGGCGCTGGCTGCCATTGACCTGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGgcc                                                                                                                                                    >  2:281164‑M2/1‑147 (MQ=255)              ttgAACAACGGCTGGCGCAGGCGCACGTTGGCGCCCTTGGAGTCATAGTCGAGGTCATTGTCCTGGCCATTCTGGCGCTGGCTGCCATTGACCTGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGgcg                                                                                                                                        >  2:578125/1‑150 (MQ=255)              ttgAACAACGGCTGGCGCAGGCGCACGTTGGCGCCCTTGGAGTCATAGTCGAGGTCATTGTCCTGGCCATTCTGGCGCTGGCTGCCATTGACATGGTTTAAGGAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGgcg                                                                                                                                        <  2:457811/150‑1 (MQ=255)                gAACAACGGCTGGCGCAGGCGCACGTTGGCGCCCTTGGAGTCATAGTCGAGGTCATTGTCCTGGCCATTCTGGCGCTGGCTGCCATTGACCTGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGcgcg                                                                                                                                      <  2:309849/150‑1 (MQ=255)                 aacaacGGCTGGCGCAGGCGCACGTTGGCGCCCTTGGAGTCATAGTCGAGGGCATTGTCCTGGCCATTCTGGCGCTGGCTGCCATTGACCTGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCgg                                                                                                                                     >  2:92117/1‑150 (MQ=255)                                      aCGTTGGCGCCCTTGGAGTCATAGTCGAGGTCATTGTCCTGGCCATTCTGGCGCTGGCTGCCATTGACCTGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGtttt                                                                                                                >  1:394596/1‑150 (MQ=255)                                                ccTTGGAGTCATAGTCGAGGTCATTGTCCTGGCCATTCTGGCGCTGGCTGCCATTGACCTGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACgg                                                                                                      >  1:404537/1‑150 (MQ=255)                                                ccTTGGAGTCATAGTCGAGGTCATTGTCCTGGCCATTCTGGCGCTGGCTGCCATTGACCTGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACgg                                                                                                      <  2:525445/150‑1 (MQ=255)                                                        tCATAGTCGAGGTCATTGTCCTGGCCATTCTGGCGCTGGCTGCCATTGACCTGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACGGCAGCGCgg                                                                                              >  2:444936/1‑150 (MQ=255)                                                              tCGAGGTCATTGTCCTGGCCATTCTGGCGCTGGCTGCCATTGACCTGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCAATGGAGCCCCTCTCATGATCGGCTGGTGTTTTATGCACGGGAGCGCGGTAGATc                                                                                        >  2:529607/1‑150 (MQ=255)                                                                     cATTGTCCTGGCCATTCTGGCGCTGGCTGCCATTGACCTGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACGGCAGCGCGGTAGATCGGGCCCt                                                                                 <  1:92117/150‑1 (MQ=255)                                                                      aTTGTCCTGGCCATTCTGGCGCTGGCTGCCATTGACCTGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACGGCAGCGCGGTAGATCGGGCCCTg                                                                                >  1:309207/1‑150 (MQ=255)                                                                           ccTGGCCATTCTGGCGCTGGCTGCCATTGACCTGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACGGCAGCGCGGTAGATCGGGCCCTGGTACt                                                                           <  1:401162/150‑1 (MQ=255)                                                                             tGGCCATTCTGGCGCTGGCTGCCATTGACCTGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACGGCAGCGCGGTAGATCGGGCCCTGGTACTGc                                                                         >  2:610347/1‑150 (MQ=255)                                                                                      tGGCGCTGGCTGCCATTGACCTGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACGGCAGCGCGGTAGATCGGGCCCTGGTACTGCAACAGGTcc                                                                <  2:390865/150‑1 (MQ=255)                                                                                                    aTTGACCTGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACGGCAGCGCGGTAGATCGGGCCCTGGTACTGCACCAGGTCCCAGGCTTGCTTCAg                                                  >  2:79046/1‑150 (MQ=255)                                                                                                    aTTGACCTGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACGGCAGCGCGGTAGATCGGGCCCTGGTACTGCAACAGGTCCCAGGCTTGCTTCAg                                                  >  1:458404/1‑150 (MQ=255)                                                                                                    aTTGACCTGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACGGCAGCGCGGTAGATCGGGCCCTGGTACTGCAACAGGTCCCAGGCTTGCTTCAg                                                  <  1:529607/150‑1 (MQ=255)                                                                                                          cTGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCTGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACGGCAGCGCGGTTGATCGGGCCTTTGTTTTGCCACAGGTCCCCGGCTTTCTTCAGGTCCAt                                            >  2:79590/1‑150 (MQ=255)                                                                                                          cTGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGgcctcggcctactgcaaccaggtcaatggcagccagcgccagaatggccaggacaatgacctcgactatgactccaagggcgccaacgtgcgcctgcgccagccgtt                                            <  2:399772‑M2/150‑108 (MQ=255)                                                                                                          cTGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACGGCAGCGCGGTAGATCGGGCCCTGGTACTGCAACAGGTCCCAGGCTTGCTTCAGGTCCAt                                            >  2:225403/1‑150 (MQ=255)                                                                                                           tGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACGGCAGCGCGGTAGATCGGGCCCTGGTACTGCAACAGGTCCCAGGCTTGCTTCAGGTCCATg                                           <  2:441225/150‑1 (MQ=255)                                                                                                           tGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACGGCAGCGCGGTAGATCGGGCCCTGGTACTGCAACAGGTCCCAGGCTTGCTTCAGGTCCATg                                           >  2:152159/1‑150 (MQ=255)                                                                                                             gTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACGGCAGCGCGCTAGATCGGGCCCTGGTACTGCAACAGGTCCCAGGCTTGCTTCAGGTCCATGGc                                         >  1:587386/1‑150 (MQ=255)                                                                                                                  aGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGTCGCTGGTCCCTTTGTCGCTACCGGCTTGTTTTTCATGCACGGCAGCGCGGTAGATCGGGCCCTGGTACTGCAACAGGTCCCAGGCTTGCTTCAGGTCCATGGCACTgg                                    <  1:444936/150‑1 (MQ=255)                                                                                                                   gTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACGGCAGCGCGGTAGATCGGGCCCTGGTACTGCAACAGGTCCCAGGCTTGCTTCAGGTCCATGGCACTGGc                                   <  1:578125/150‑1 (MQ=255)                                                                                                                     aGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACGGCAGCGCGGTAGATCGGGCCCTGGTACTGCAACAGGTCCCAGGCTTGCTTCAGGTCCATGGCACTGGCCt                                 <  1:303892/150‑1 (MQ=255)                                                                                                                      ggCCGAGGCGTTGATCTGCGGCAGCAGGCCGgcctcggcctacttcaaccaggtcaatggcagccagcgccagaatggccaggacaatgacctcgactatgactccaagggcgccaacgt                                                              >  2:303438‑M2/1‑31 (MQ=255)                                                                                                                      ggCCGAGGCGTTGATCTGCGGCAGCAGGCCGgcctcggcctacttcaaccaggtcaatggcagccagcgccagaatggccaggacaatgacctcgactatgactccaagggcgccaacgt                                                              <  1:303438‑M2/120‑90 (MQ=255)                                                                                                                      ggCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACGGCAGCGCGGTAGATCGGGCCCTGGTACTGCAACAGGTCCCAGGCTTGCTTCAGGTCCATGGCACTGGCCTg                                <  2:394596/150‑1 (MQ=255)                                                                                                                           aGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTTTTTTTTTTTTTCGCGGTAGATCGGGCCCTGGTACTGCAACAGGTCCCAGGCTTGCTTCAGGTCCATGGCACTGGCCTGTACgg                           >  2:610727/1‑150 (MQ=255)                                                                                                                               gTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACGGCAGCGCGGTAGATCGGGCCCTGGTACTGCACCAGGTCCCAGGCTTGCTTCAGGTCCATGGCACTGGCCTGTACGGCAAc                       <  1:13654/150‑1 (MQ=255)                                                                                                                                         ggCAGCAGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACGGCAGCGCGGTAGATCGGGCCCTGGTACTGCAACAGGTCCCAGGCTTGCTTCAGGTCCATGGCACTGGCCTGTACGGCAACTCCCAGCAgg             <  1:565871/150‑1 (MQ=255)                                                                                                                                          gcagcaGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACGGCAGCGCGGTAGATCGGGCCCTGGTACTGCAACAGGTCCCAGGCTTGCTTCAGGTCCATGGCACTGCCCTGTACGGCAACTCCCAGCAGGc            >  2:450543/1‑150 (MQ=255)                                                                                                                                                  ccggccTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACGGCAGCGCGGTAGATCGGGCCCTGGTACTGCAACAGGTCCCAGGCTTGCTTCAGGTCCATGGCACTGGCCTGTACGGCAACTCCCAGCAGGCACACCATc    <  1:610347/150‑1 (MQ=255)                                                                                                                                                    ggccTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACGGCAGCGCGGTAGATCGGGCCCTGGTACTGCAACAGGTCCCAGGCTTGCTTCAGGTCCATGGCACTGGCCTGTACGGCAACTCCCAGCAGGCACACCATCAg  <  1:152159/150‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                      CATCTTCTGTTTGTTGAACAACGGCTGGCGCAGGCGCACGTTGGCGCCCTTGGAGTCATAGTCGAGGTCATTGTCCTGGCCATTCTGGCGCTGGCTGCCATTGACCTGGTTGAAGTAGGCCGAGGCGTTGATCTGCGGCAGCAGGCCGGCCTCGCCGATGGCGCGGTTTTCGCCACCGGCTTGTTTTTCATGCACGGCAGCGCGGTAGATCGGGCCCTGGTACTGCAACAGGTCCCAGGCTTGCTTCAGGTCCATGGCACTGGCCTGTACGGCAACTCCCAGCAGGCACACCATCAG  >  NC_002947/2907084‑2907380

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.