| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5373440 | 30 (1.300) | 4 (0.190) | 4/226 | NT | 13.3% | intergenic (‑65/+104) | PP_mr67/dapB | P32 ncRNA/4‑hydroxy‑tetrahydrodipicolinate reductase |
| ? | NC_002947 | = 5373519 | 25 (1.200) | intergenic (‑144/+25) | PP_mr67/dapB | P32 ncRNA/4‑hydroxy‑tetrahydrodipicolinate reductase | |||||
CCCGCTTTCATGTGCTGAATTCAATTCGCTGCGCGCTTTTAGTGGACACACTAAAGCTGTAGCTTACAGAAAAGTGTGTTTTCGGTCTACCGCGGATGTGTCTCTAAAACACATCAATGCGACAGACTGACATCTGTGTTGGCTTCTGCGCGGGCTGGTGCGCCCCCACAGGGATCGCACCAGCCCAAGAGCAACGCCGCACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCAACACCACACTTACGGCTTAACGCAGCTCAAGCACATCCTGCATGTCGTACAGCCCCGGCTC > NC_002947/5373294‑5373588 | cccGCTTTCATGTGCTGAATTCAATTCGCTGCGCGCTTTTAGTGGACACACTAAAGCTGTAGCTTACAGAAAAGTGTGTTTTCGGTCTACCGCGGATGTGTCTCTAAAACACATCAATGCGACAGACTGACATCTGTGTTGGCTTCTgcg > 2:58785/1‑150 (MQ=255)cccGCTTTCATGTGCTGAATTCAATTCGCTGCGCGCTTTTAGTGGACACACTAAAGCTGTAGCTTACAGAAAAGTGTGTTTTCGGTCTACCGCGGATGTGTCTCTAAAACACATCAATGCGACAGACTGACATCTGTGTTGGCTTCTgcg > 2:244849/1‑150 (MQ=255) ccGCTTTCATGTGCTGAATTCAATTCGCTGCGCGCTTTTAGTGGACACACTAAAGCTGTAGCTTACAGAAAAGTGTGTTTTCGGTCTACCGCGGATGTGTATCTACAACACATCAGTGCGACATAGTGACATCTGTGTTGGCTTCTgcgc > 1:291667/1‑150 (MQ=255) gCTTTCATGTGCTGAATTCAATTCGCTGCGCGCTTTTAGTGGACACACTAAAGCTGTAGCTTACAGAAAAGTGTGTTTTCGGTCTACCGCGGATGTGTCTCTAAAACACATCAATGCGACAGACTGACATCTGTGTTGGCTTCTGCGCgg < 1:58785/150‑1 (MQ=255) tGAATTCAATTCGCTGCGCGCTTTTAGTGGACACACTAAAGCTGTAGCTTACAGAAAAGTGTGTTTTCGGTCTACCGCGGATGTGTCTCTAAAACACATCAATGCGACAGACTGACATCTGTGTTGGCTTCTGCGCGGGCTGGTGTGccc > 1:460143/1‑150 (MQ=255) aattcaattcGCTGCGCGCTTTTAGTGGACACACTAAAGCTGTAGCTTACAGAAAAGTGTGTTTTCGGTCTACCGCGGATGTGTCTCTAAAACACATCAATGCGACAGACTGACATCTGTGTTGGCTTCTGCGCGGGCTGGTGCGccccc < 1:381358/150‑1 (MQ=255) tcGCTGCGCGCTTTTAGTGGACACACTAAAGCTGTAGCTTACAGAAAAGTGTGTTTTCGGTCTACCGCGGATGTGTCTCTAAAACACATCAATGCGACAGACTGACATCTGTGTTGGCTTCTGCGCGGGCTGGTGCGCCCCCACAGGGAt < 2:569736/150‑1 (MQ=255) cTGTAGCTTACAGAAAAGTGTGTTTTCGGTCTACCGCGGATGTGTCTCTAAAACACATCAATGCGACAGACTGACATCTGTGTTGGCTTCTGCGCGGGCTGGTGCGCCCCCACAGGGATCGCACCAGCCCAAGAGCAACGCCGCACCtgt > 1:308596/1‑150 (MQ=255) aCAGAAAAGTGTGTTTTCGGTCTACCGCGGATGTGTCTCTAAAACACATCAATGCGACAGACTGACATCTGTGTTGGCTTCTGCGCGGGCTGGTGCGCCCCCACAGGGATCGCACCAGCCCAAGAGCAACGCCGCACCTGTGGGAGCggg < 1:161055/150‑1 (MQ=255) aCAGAAAAGTGTGTTTTCGGTCTACCGCGGATGTGTCTCTAAAACACATCAATGCGACAGACTGACATCTGTGTTGGCTTCTGCGCGGGCTGGTGCGCCCCCACAGGGATCGCACCAGCCCAAGAGCAACGCCGCACCTGTGGGAGCggg > 1:328913/1‑150 (MQ=255) aGAAAAGTGTGTTTTCGGTCTACCGCGGATGTGTCTCTAAAACACATCAATGCGACAGACTGACATCTGTGTTGGCTTCTGCGCGGGCTGGTGCGCCCCCACAGGGATCGCACCAGCCCAAGAGCAACGCCGCACCTGTGGTAGCGGTCa > 2:207254/1‑150 (MQ=255) gAAAAGCGTGTTTTCTGTCTACCGCGGATGTGTCTCTAAAACACATCAATGCGACAGACTGACATCTGTGTTGGCTTCTGCGCGCGCTGGTGCGCCCCCACAGGGATCGCAGCAGCCCAAGAGCAACGCTGCACCTGTGGGAGCGGGCaa < 2:233552/150‑1 (MQ=255) aaaaGTGTGTTTTCGGTCTACCGCGGATGTGTCTCTAAAACACATCAATGCGACAGACTGACATCTGTGTTGGCTTCTGCGCGGGCTGGTGCGCCCCCACAg > 2:543798/1‑102 (MQ=255) aaaaGTGTGTTTTCGGTCTACCGCGGATGTGTCTCTAAAACACATCAATGCGACAGACTGACATCTGTGTTGGCTTCTGCGCGGGCTGGTGCGCCCCCACAg < 1:543798/102‑1 (MQ=255) aaaaGTGTGTTTTCGGTCTACCGCGGATGTGTCTCTAAAACACATCAATGCGACAGACTGACATCTGTGTTGGCTTCTGCGCGGGCTGGTGCGCCCCCACAGGGATCGCACCa > 2:21015/1‑113 (MQ=255) aaaaGTGTGTTTTCGGTCTACCGCGGATGTGTCTCTAAAACACATCAATGCGACAGACTGACATCTGTGTTGGCTTCTGCGCGGGCTGGTGCGCCCCCACAGGGATCGCACCa < 1:21015/113‑1 (MQ=255) gtgtgtTTTCGGTCTACCGCGGATGTGTCTCTAAAACACATCAATGCGACAGACTGACATCTGTGTTGGCTTCTGCGCGGGCTGATGCGCCCCCACAGGGATCGCACCAGCCCAAGAGCAACGCCGCACCTGTGGGAGCGGGCAAGCCcg > 1:105039/1‑150 (MQ=255) ttttCGGTCTACCGCGGATGTGTCTCTAAAACACATCAATGCGACAGACTGACATCTGTGTTGGCTTCTtcgcgggcttgcccgctcccacaggtgcggcgttgctcttgggctggtgcgatccctgtgggggcgcaccagcccgcgcag > 1:373578‑M1/1‑69 (MQ=255) ttttCGGTCTACCGCGGATGTGTCTCTAAAACACATCAATGCGACAGACTGACATCTGTGTTGGCTTCTGCGCGGGCTGGTGCGCCCCCACAGGGATCGCACCAGCCCAAGAGCAACGCCGCACCTGTGGGAGCGGGCAAGCCCGCGAag > 2:291667‑M2/1‑148 (MQ=255) ggTCTACCGCGGATGTGTCTCTAAAACACATCAATGCGACAGGCTGACATCTGTGTTGGCTTCTGCGCGGGCTGGTGCGCCCCCACAGGGATCGCACCAGCCCAAGAGCAACGCCGCACCTGTGGGAGCGGGCAAGCCCGCGAagaagcc > 1:174545‑M2/1‑143 (MQ=255) ggTCTACCGCGGATGTGTCTCTAAAACACATCAATGCGACAGACTGACATCTGTGTTGGCTTCTGCGCGGGCTGGTGCTCCCCCACAGGGATCGCACCAGCCCAAGAGCAACGCCGCACCTGTGGGAGCGGGCAAGCCCGCGAagaagcc > 1:174229‑M2/1‑143 (MQ=255) ggTCTACCGCGGATGTGTCTCTAAAACACATCAATGCGACAGACTGACATCTGTGTTGGCTTCTGCGCGGGCTGGTGCGCCCCCACAGGGATCGCACCAGCCCAAGAGCAACGCCGCACCTGTGGGAGCGGGCAAGCCCGCGAagaagcc < 1:19978‑M2/150‑8 (MQ=255) tCTACCGCGGATGTGTCTCTAAAACACATCAATGCGACAGACTGACATCTGTGTTGGCTTCTGCGCGGGCTGGTGCGCCCCCACAGGGATGGCACCAGCCCAAGAGCAACGCCGCACCTGTGGGAGCGGGCAAGCCCGCGAagaagccaa > 2:34330‑M2/1‑141 (MQ=255) tCTACCGCGGATGTGTCTCTAAAACACATCAATGCGACAGACTGACATCTGTGTTGGCTTCTGCGCGGGCTGGTGCGCCCCCACAGGGATCGCACCAGCCCAAGAGCAACGCCGCACCTGTGGGAGCGGGCAAGCCCGCGAagaagccaa > 2:308596‑M2/1‑141 (MQ=255) tACCGCGGATGTGTCTCTAAAACACATCAATGCGACAGACTGACATCTGTGTTGGCTTCTGCGCGGGCTGGTGCGCCCCCACAGGGATCGCACCAGCCCAAGAGCAACGCCGCACCTGTGGGAGCGGGCAAGCCCGCGAagaagccaaca < 2:492641‑M2/150‑12 (MQ=255) aCCGCGGATGTGTCTCTAAAACACATCAATGCGACAGACTGACATCTGTGTTGGCTTCTGCGCGGGCTGGTGCGCCCCCACAGGGATCGCACCAGCCCAAGAGCAACGCCGCACCTGTGGGAGCGGGCAAGCCCGCGAagaagccaacac > 1:492641‑M2/1‑138 (MQ=255) gcgGATGTGTCTCTAAAACACATCAATGCGACAGACTGACATCTGTGTTGGCTTCTGCGCGGGCTGGTGCGCCCCCACAGGGATCGCACCAGCCCAAGAGCAACGCCGCACCTGTGGGAGCGGGCAAGCCcgc > 2:472158/1‑133 (MQ=255) gcgGATGTGTCTCTAAAACACATCAATGCGACAGACTGACATCTGTGTTGGCTTCTGCGCGGGCTGGTGCGCCCCCACAGGGATCGCACCAGCCCAAGAGCAACGCCGCACCTGTGGGAGCGGGCAAGCCcgc < 1:472158/133‑1 (MQ=255) cgGATGTGTCTCTAAAACACATCAATGCGACAGACTGACATCTGTGTTGGCTTCTtcgcgggcttgcccgctcccacaggtgcggcgttgctcttgggctggtgcgatccctgtgggggcgcaccagcccgcgcagaagccaacacagat < 2:373578‑M1/150‑96 (MQ=255) gATGTGTCTCTAAAACACATCAATGCGACAGACTGACATCTGTGTTGGCTTCTGCGCGGGCTGGTGCGCCCCCACAGGGATCGCACCAGCCCAAGAGCAACGCCGCACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCAACACCACACt < 2:328913/150‑1 (MQ=255) tgtCGCTAAAACACATCAATGCGACAGACTGACATCTGTGTTGGCTTCTGCGCGGGCTGGTGCGCCCCCACAGGGATCGCACCAGCCCAAGAGCAACGCCGCACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCAACACCACACTTACg < 2:496423/150‑1 (MQ=255) tctcTAAAACACATCAATGCGACAGACTGACATCTGTGTTGGCTTCTGCGCGGGCTGGTGCGCCCCCACAGGGATCGCACCAGCCCAAGAGCAACGCCGCACCTGTGGGa < 2:269822/110‑1 (MQ=255) tctcTAAAACACATCAATGCGACAGACTGACATCTGTGTTGGCTTCTGCGCGGGCTGGTGCGCCCCCACAGGGATCGCACCAGCCCAAGAGCAACGCCGCACCTGTGGGa > 1:269822/1‑110 (MQ=255) tctAAAACACATCAATGCGACAGACTGACATCTGTGTTGGCTTCTGCGCGGGCTGGTGCGCCCCCACAGGGATCGCACCAGCCCAAGAGCAACGCCGCACCTGTGGCAGCGCGCAAGCCCGCGAACAAGCCAACACCACACTTACGGCtt > 2:344299/1‑150 (MQ=255) ctAAAACACATCAATGCGACAGACTGACATCTGTGTTGGCTTCTtcgcgggcttgcccgctcccacaggtgcggcgttgctcttgggctggtgcgatccctgtgggg > 2:327484‑M1/1‑44 (MQ=255) ctAAAACACATCAATGCGACAGACTGACATCTGTGTTGGCTTCTtcgcgggcttgcccgctcccacaggtgcggcgttgctcttgggctggtgcgatccctgtgggg < 1:327484‑M1/107‑64 (MQ=255) aaaCACATCAATGCGACAGACTGACATCTGTGTTGGCTTCTGCGCGGGCTGGTGCGCCCCCACAGGGATCGCACCAGCCCAAGAGCAACGCCGCACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCAACACCACACTTACGGCTTAACg > 1:82839/1‑150 (MQ=255) acacATCAATGCGACAGACTGACATCTGTGTTGGCTTCTGCGCGGGCTGGTGTGCCCCCACAGGGATCGCACCAGCCCAAGAGCAACGCCGCACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCAACACCACACTTACGGCTTAACTCa < 2:460143/150‑1 (MQ=255) aTCAATGCGACAGACTGACATCTGTGTTGGCTTCTGCGCGGGCTGGTGCGCCCCCACAGGGATCGCACCAGCCCAAGAGCAACGCCGCACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCAACACCACACTTACGGCTTAACGCAGCTc > 1:71288/1‑150 (MQ=255) gACAGACTGACATCTGTGTTGGCTTCTGCGCGGGCTGGTGCGCCCCCACAgg > 2:192407/1‑52 (MQ=255) gACAGACTGACATCTGTGTTGGCTTCTGCGCGGGCTGGTGCGCCCCCACAgg < 1:192407/52‑1 (MQ=255) gACAGACTGACATCTGTGTTGGCTTCTGCGCGGGCTGGTGCGCCCCCACAGGGATCGCACCAGCCCAAGAGCAACGCCGCACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCAACACCACACTTACGGCTTAACGCAGCTCAAGCACAt > 2:191958/1‑150 (MQ=255) aTCTGTGTTGGCTTCTGCGCGGGCTGGTGCGCCCCCACAGGGATCGCACCAGCCCAAGAGCAACGCCGCACCTGTGGGAGCGGGCAAGCCCGCGAagaagccaacacagatgtcagtctgtcgcattgatgtgttttagagacacatccg < 2:373578‑M2/150‑56 (MQ=255) cTGTGTTGGCTTCTGCGCGGGCTGGTGCGCCCCCACAGGGATCGCACCAGCCCAAGAGCAACGCCGCACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCAACACCACACTTACGGCTTAACGCAGCTCAAGCACATCCTGCATGTCGTa < 1:291550/150‑1 (MQ=255) gtgtTGGCTTCTtcgcgggcttgcccgctcccacaggtgcggcgttgctcttgggctggtgcgatccctgtgggggcgcaccagcccgcgcagaagccaacacagatgtcagtctgtcgcattgatgtgttttagagacacatccgcggt > 1:492641‑M1/1‑12 (MQ=255) gtgtTGGCTTCTGCGCGGGCTGGTGCGCCCCCACAGGGATCGCACCAGCCCAAGAGCAACGCCGCACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCAACACCACACTTACGGCTTAACGCAGCTCAAGCACATCCTGCATGTCGTACa < 2:19978/150‑1 (MQ=255) tgtTGGCTTCTtcgcgggcttgcccgctcccacaggtgcggcgttgctcttgggctggtgcgatccctgtgggggcgcaccagcccgcgcagaagccaacacagatgtcagtctgtcgcattgatgtgttttagagacacatccgcggta < 2:492641‑M1/150‑140 (MQ=255) ttGGCTTCTtcgcgggcttgcccgctcccacaggtgcggcgttgctcttgggctggtgcgatccctgtgggggcgcaccagcccgcgcagaagccaacacagatgtcagtctgtcgcattgatgtgttttagagacacatccgcggtaga > 2:308596‑M1/1‑9 (MQ=255) ttGGCTTCTtcgcgggcttgcccgctcccacaggtgcggcgttgctcttgggctggtgccatccctgtgggggcgcaccagcccgcgcagaagccaacacagatgtcagtctgtcgcattgatgtgttttagagacacatccgcggtaga > 2:34330‑M1/1‑9 (MQ=255) ggCTTCTtcgcgggcttgcccgctcccacaggtgcggcgttgctcttgggctggtgcgatccctgtgggggcgcaccagcccgcgcagaagccaacacagatgtcagtctgtcgcattgatgtgttttagagacacatccgcggtagacc < 1:19978‑M1/150‑144 (MQ=255) ggCTTCTtcgcgggcttgcccgctcccacaggtgcggcgttgctcttgggctggtgcgatccctgtgggggcgcaccagcccgcgcagaagccaacacagatgtcagcctgtcgcattgatgtgttttagagacacatccgcggtagacc > 1:174545‑M1/1‑7 (MQ=255) ggCTTCTtcgcgggcttgcccgctcccacaggtgcggcgttgctcttgggctggtgcgatccctgtgggggagcaccagcccgcgcagaagccaacacagatgtcagtctgtcgcattgatgtgttttagagacacatccgcggtagacc > 1:174229‑M1/1‑7 (MQ=255) ggCTTCTGCGCGGGCTGGTGCGCCCCCACAGGGATCGCACCAGCCCAAGAGCAACGCCGCACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCAACACCACACTTACGGCTTAACGCAGCTCAAGCACATCCTGCATGTCGTACAGcccc > 2:231288/1‑150 (MQ=255) ttCTGCGCGGGCTGGTGCGCCCCCACAGGGATCGCACCAGCCCAAGAGCAACGCCGCACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCAACACCACACTTACGGCTTAACGCAGCTCAAGCACATCCTGCATGTCGTACAGCCCCGGc > 1:34467/1‑150 (MQ=255) cttcgcgggcttgcccgctcccacaggtgcggcgttgctcttgggctggtgcgatccctgtgggggcgcaccagcccgcgcagaagccaacacagatgtcagtctgtcgcattgatgtgttttagagacacatccgcggtagaccgaaaa > 2:291667‑M1/1‑2 (MQ=255) cTGCGCGGGCTGGTGCGCCCCCACAGGGATCGCACCAGCCCAAGAGCAACGCCGCACCTGTGGGAGCGGGCAAGCCCGCGAagaagccaacacagatgtcagtctgtcgcattgatgtgttttagagacacatccgcggtagaccgaaaa > 1:373578‑M2/1‑81 (MQ=255) | CCCGCTTTCATGTGCTGAATTCAATTCGCTGCGCGCTTTTAGTGGACACACTAAAGCTGTAGCTTACAGAAAAGTGTGTTTTCGGTCTACCGCGGATGTGTCTCTAAAACACATCAATGCGACAGACTGACATCTGTGTTGGCTTCTGCGCGGGCTGGTGCGCCCCCACAGGGATCGCACCAGCCCAAGAGCAACGCCGCACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCAACACCACACTTACGGCTTAACGCAGCTCAAGCACATCCTGCATGTCGTACAGCCCCGGCTC > NC_002947/5373294‑5373588 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |