New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5373440	30 (1.300)	4 (0.190)	4/226	NT	13.3%	intergenic (‑65/+104)	PP_mr67/dapB	P32 ncRNA/4‑hydroxy‑tetrahydrodipicolinate reductase
	?	NC_002947	= 5373519	25 (1.200)					intergenic (‑144/+25)	PP_mr67/dapB	P32 ncRNA/4‑hydroxy‑tetrahydrodipicolinate reductase

TTTTCGGTCTACCGCGGATGTGTCTCTAAAACACATCAATGCGACAGACTGACATCTGTGTTGGCTTCTGCGCGGGCTGGTGCGCCCCCACAGGGATCGCACCAGCCCAAGAGCAACGCCGCACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCAACACCACACTTACGGCTTAACGCAGCTCAAGCACATCCTGCATGTCGTACAGCCCCGGCTCGCGCCCGTCCAGCCACAGCGCCGCACGCACGGCACCCTTGGCGAAAGTCATGCGGCTGGAGGCCTTGTGGGTGATTTCCA  >  NC_002947/5373372‑5373668                                                                                                                                                    |                                                                                                                                                      ttttCGGTCTACCGCGGATGTGTCTCTAAAACACATCAATGCGACAGACTGACATCTGTGTTGGCTTCTGCGCGGGCTGGTGCGCCCCCACAGGGATCGCACCAGCCCAAGAGCAACGCCGCACCTGTGGGAGCGGGCAAGCCCGCGAag                                                                                                                                                     >  2:291667‑M2/1‑148 (MQ=255)      ggTCTACCGCGGATGTGTCTCTAAAACACATCAATGCGACAGGCTGACATCTGTGTTGGCTTCTGCGCGGGCTGGTGCGCCCCCACAGGGATCGCACCAGCCCAAGAGCAACGCCGCACCTGTGGGAGCGGGCAAGCCCGCGAagaagcc                                                                                                                                                >  1:174545‑M2/1‑143 (MQ=255)      ggTCTACCGCGGATGTGTCTCTAAAACACATCAATGCGACAGACTGACATCTGTGTTGGCTTCTGCGCGGGCTGGTGCTCCCCCACAGGGATCGCACCAGCCCAAGAGCAACGCCGCACCTGTGGGAGCGGGCAAGCCCGCGAagaagcc                                                                                                                                                >  1:174229‑M2/1‑143 (MQ=255)      ggTCTACCGCGGATGTGTCTCTAAAACACATCAATGCGACAGACTGACATCTGTGTTGGCTTCTGCGCGGGCTGGTGCGCCCCCACAGGGATCGCACCAGCCCAAGAGCAACGCCGCACCTGTGGGAGCGGGCAAGCCCGCGAagaagcc                                                                                                                                                <  1:19978‑M2/150‑8 (MQ=255)        tCTACCGCGGATGTGTCTCTAAAACACATCAATGCGACAGACTGACATCTGTGTTGGCTTCTGCGCGGGCTGGTGCGCCCCCACAGGGATGGCACCAGCCCAAGAGCAACGCCGCACCTGTGGGAGCGGGCAAGCCCGCGAagaagccaa                                                                                                                                              >  2:34330‑M2/1‑141 (MQ=255)        tCTACCGCGGATGTGTCTCTAAAACACATCAATGCGACAGACTGACATCTGTGTTGGCTTCTGCGCGGGCTGGTGCGCCCCCACAGGGATCGCACCAGCCCAAGAGCAACGCCGCACCTGTGGGAGCGGGCAAGCCCGCGAagaagccaa                                                                                                                                              >  2:308596‑M2/1‑141 (MQ=255)          tACCGCGGATGTGTCTCTAAAACACATCAATGCGACAGACTGACATCTGTGTTGGCTTCTGCGCGGGCTGGTGCGCCCCCACAGGGATCGCACCAGCCCAAGAGCAACGCCGCACCTGTGGGAGCGGGCAAGCCCGCGAagaagccaaca                                                                                                                                            <  2:492641‑M2/150‑12 (MQ=255)           aCCGCGGATGTGTCTCTAAAACACATCAATGCGACAGACTGACATCTGTGTTGGCTTCTGCGCGGGCTGGTGCGCCCCCACAGGGATCGCACCAGCCCAAGAGCAACGCCGCACCTGTGGGAGCGGGCAAGCCCGCGAagaagccaacac                                                                                                                                           >  1:492641‑M2/1‑138 (MQ=255)                 gATGTGTCTCTAAAACACATCAATGCGACAGACTGACATCTGTGTTGGCTTCTGCGCGGGCTGGTGCGCCCCCACAGGGATCGCACCAGCCCAAGAGCAACGCCGCACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCAACACCACACt                                                                                                                                     <  2:328913/150‑1 (MQ=255)                     tgtCGCTAAAACACATCAATGCGACAGACTGACATCTGTGTTGGCTTCTGCGCGGGCTGGTGCGCCCCCACAGGGATCGCACCAGCCCAAGAGCAACGCCGCACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCAACACCACACTTACg                                                                                                                                 <  2:496423/150‑1 (MQ=255)                         tctAAAACACATCAATGCGACAGACTGACATCTGTGTTGGCTTCTGCGCGGGCTGGTGCGCCCCCACAGGGATCGCACCAGCCCAAGAGCAACGCCGCACCTGTGGCAGCGCGCAAGCCCGCGAACAAGCCAACACCACACTTACGGCtt                                                                                                                             >  2:344299/1‑150 (MQ=255)                             aaaCACATCAATGCGACAGACTGACATCTGTGTTGGCTTCTGCGCGGGCTGGTGCGCCCCCACAGGGATCGCACCAGCCCAAGAGCAACGCCGCACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCAACACCACACTTACGGCTTAACg                                                                                                                         >  1:82839/1‑150 (MQ=255)                               acacATCAATGCGACAGACTGACATCTGTGTTGGCTTCTGCGCGGGCTGGTGTGCCCCCACAGGGATCGCACCAGCCCAAGAGCAACGCCGCACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCAACACCACACTTACGGCTTAACTCa                                                                                                                       <  2:460143/150‑1 (MQ=255)                                   aTCAATGCGACAGACTGACATCTGTGTTGGCTTCTGCGCGGGCTGGTGCGCCCCCACAGGGATCGCACCAGCCCAAGAGCAACGCCGCACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCAACACCACACTTACGGCTTAACGCAGCTc                                                                                                                   >  1:71288/1‑150 (MQ=255)                                           gACAGACTGACATCTGTGTTGGCTTCTGCGCGGGCTGGTGCGCCCCCACAGGGATCGCACCAGCCCAAGAGCAACGCCGCACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCAACACCACACTTACGGCTTAACGCAGCTCAAGCACAt                                                                                                           >  2:191958/1‑150 (MQ=255)                                                      aTCTGTGTTGGCTTCTGCGCGGGCTGGTGCGCCCCCACAGGGATCGCACCAGCCCAAGAGCAACGCCGCACCTGTGGGAGCGGGCAAGCCCGCGAagaagccaacacagatgtcagtctgtcgcattgatgtgttttagagacacatccg                                                                                                <  2:373578‑M2/150‑56 (MQ=255)                                                        cTGTGTTGGCTTCTGCGCGGGCTGGTGCGCCCCCACAGGGATCGCACCAGCCCAAGAGCAACGCCGCACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCAACACCACACTTACGGCTTAACGCAGCTCAAGCACATCCTGCATGTCGTa                                                                                              <  1:291550/150‑1 (MQ=255)                                                          gtgtTGGCTTCTGCGCGGGCTGGTGCGCCCCCACAGGGATCGCACCAGCCCAAGAGCAACGCCGCACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCAACACCACACTTACGGCTTAACGCAGCTCAAGCACATCCTGCATGTCGTACa                                                                                            <  2:19978/150‑1 (MQ=255)                                                               ggCTTCTGCGCGGGCTGGTGCGCCCCCACAGGGATCGCACCAGCCCAAGAGCAACGCCGCACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCAACACCACACTTACGGCTTAACGCAGCTCAAGCACATCCTGCATGTCGTACAGcccc                                                                                       >  2:231288/1‑150 (MQ=255)                                                                  ttCTGCGCGGGCTGGTGCGCCCCCACAGGGATCGCACCAGCCCAAGAGCAACGCCGCACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCAACACCACACTTACGGCTTAACGCAGCTCAAGCACATCCTGCATGTCGTACAGCCCCGGc                                                                                    >  1:34467/1‑150 (MQ=255)                                                                    cTGCGCGGGCTGGTGCGCCCCCACAGGGATCGCACCAGCCCAAGAGCAACGCCGCACCTGTGGGAGCGGGCAAGCCCGCGAagaagccaacacagatgtcagtctgtcgcattgatgtgttttagagacacatccgcggtagaccgaaaa                                                                                  >  1:373578‑M2/1‑81 (MQ=255)                                                                         cgGGCTGGTGCGCCCCCACAGGGATCGCACCAGCCCAAGAGCAACGCCGCACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCAACACCACACTTACGGCTTAACGCAg                                                                                                                      <  1:58993/109‑1 (MQ=255)                                                                         cgGGCTGGTGCGCCCCCACAGGGATCGCACCAGCCCAAGAGCAACGCCGCACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCAACACCACACTTACGGCTTAACGCAg                                                                                                                      >  2:58993/1‑109 (MQ=255)                                                                               ggTGCGCCCCCAAAGGGATCGTACAAGCCCAAGAGCAACGCCGCACCTGTGGGAGCGGGCAAGCCCGAGAAGAAGCCAACACCCCCCTTACGGCTTACCGCAGCTCAAGCACATCCTGCATGTCGTATAGCCCCGGCTCGCGCCCGTCCa                                                                       <  2:105039/150‑1 (MQ=255)                                                                                 tGCGCCCCCACAGGGATCGCACCAGCCCAAGAGCAACGCCGCACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCAACACCACACTTACGGCTTAACGCAGCTCAAGCACATCCTGCATGTCGTACAGCCCCGGCTCGCGCCCGTCCAGc                                                                     <  2:71288/150‑1 (MQ=255)                                                                                      ccccACAGGGATCGCACCAGCCCAAGAGCAACGCCGCACCTGTGGGAGCGGGCAAGCCCGCGAagaagccaacacagatgtcagtctgtcgcattgatgtgttttag                                                                                                           >  2:327484‑M2/1‑63 (MQ=255)                                                                                      ccccACAGGGATCGCACCAGCCCAAGAGCAACGCCGCACCTGTGGGAGCGGGCAAGCCCGCGAagaagccaacacagatgtcagtctgtcgcattgatgtgttttag                                                                                                           <  1:327484‑M2/107‑45 (MQ=255)                                                                                                     aCCAGCCCAAGAGCAACGCCGCACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCAACACCACACTTACGGCTTAACGCAGCTCAAGCACATCCTGCATGTCGTACAGCCCCGGCTCGCGCCCGTCCAGCCACAGCGCCGCACGCACGGc                                                 >  1:125447/1‑150 (MQ=255)                                                                                                               gagCAACGCCGCACCTGTGGGAGCGGGCAAGCCCGCGCAGAAGCCAACACCACACTTACGGCTCAACGCAGCTCAAGCACATCCTGCATGTCGTACAGCCCCGCCTCGCGCCCGTCCAGCCACAGCGCCGCACGCACGGCACCCTTGGCg                                       >  2:514184/1‑150 (MQ=255)                                                                                                                  cAACGCCGCACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCAACACCACACTTACGGCTTAACGCAGCTCAAGCACATCCTGCATGTCGTACAGCCCCGGCTCGCGCCCGTCCAGCCACAGCGCCGCACGCACGGCACCCTTGGCGaaa                                    <  2:82839/150‑1 (MQ=255)                                                                                                                  cAACGCCGCACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCAACACCACACTTACGGCTTAACGCAGCTCAAGCACATCCTGCATGTCGTACAGCCCCGGCTCGCGCCCGTCCAGCCACAGCGCCGCACGCACGGCACCCTTGGCGaaa                                    <  1:191958/150‑1 (MQ=255)                                                                                                                    aCGCCGCACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCAACACCACACTTACGGCTTAACGCAGCTCAAGCACATCCTGCATGTCGTACAGCCCCGGCTCGCGCCCGTCCAGCCACAGCGCCGCACGCACGGCACCCTTGGCGAAAGt                                  >  1:595344/1‑150 (MQ=255)                                                                                                                             cTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCAACACCACACTTACGGCTTAACGCAGCTCAAGCACATCCTACATGTCGTACAGCCCCGGCTCGCGCCCGTCCAGCCACAGCGCCGCACGCACGGCACCCTTGGCGAAAGTCATGCGGCt                         >  1:234377/1‑150 (MQ=255)                                                                                                                                  ttcgCGGGCTTGCCCGCGAAGAAGCCAACACCACACTTACGGCTTAACGCAGCTCAAGCACATCCTGCATGTCGTACAGCCCCGGCTCGCGCCCGTCCAGCCACAGCGCCGCACGCACGGCACCCTTGGCGAAAGTCATGCGGCTGGAgg                    >  1:515930/4‑150 (MQ=255)                                                                                                                                          cAAGCCCGCGAAGAAGCCAACACCACACTTACGGCTTAACGCAGCTCAAGCACATCCTGCATGTCGTACCGCCCCGGAACGCGCCCGTACACTTAGTTGGCCGCACGCACGGCACCCTTGGCGAAAGTCATGCGGCTGGAGGCCTTGTgg            <  1:231288/150‑1 (MQ=255)                                                                                                                                            tgCCCGCGAAGAAGCCAACACCACACTTACGGCTTAACGCAGCTCAAGCACATCCTGCATGTCGTACAGCCCCGGCTCGCGCCCGTCCAGCCACAGCGCCGCACGCACGGCACCCTTGGCGAAAGTCATGCGGCTGGAGGCCTTGTGGGt          <  2:515930/149‑1 (MQ=255)                                                                                                                                               ccGCGAAGAAGCCAACACCACACTTACGGCTTAACGCAGCTCAAGCACATCCTGCATGTCGTACAGCCCCGGCTCGCGCCCGTCCAGCCACAGCGCCGCACGCACGGCACCCTTGGCGAAAGTCATGCGGCTGGAGGCCTTGTGGGTGAt       >  1:386527/1‑150 (MQ=255)                                                                                                                                                    aagaagCCAACACCACACTTACGGCTTAACGCAGCTCAAGCACATCCTGCATGTCGTACAGCCCCGGCTCGCGCCCGTCCAGCCACAGCGCCGCACGCACGGCACCCTTGGCGAAAGTCATGCGGCTGGAGGCCTTGTGGGTGATTTCCa  <  2:125447/150‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                      TTTTCGGTCTACCGCGGATGTGTCTCTAAAACACATCAATGCGACAGACTGACATCTGTGTTGGCTTCTGCGCGGGCTGGTGCGCCCCCACAGGGATCGCACCAGCCCAAGAGCAACGCCGCACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCAACACCACACTTACGGCTTAACGCAGCTCAAGCACATCCTGCATGTCGTACAGCCCCGGCTCGCGCCCGTCCAGCCACAGCGCCGCACGCACGGCACCCTTGGCGAAAGTCATGCGGCTGGAGGCCTTGTGGGTGATTTCCA  >  NC_002947/5373372‑5373668

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.