New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1551725 =	33 (1.430)	3 (0.140)	3/234	NT	9.4%	coding (1139/1455 nt)	pykA	pyruvate kinase II
	?	NC_002947	1551778 =	27 (1.250)					coding (1086/1455 nt)	pykA	pyruvate kinase II

CGGCCGGGTCGAAGGCAATCGGGTACACGCCACGGAACATCGAGGCGCGCGCCTGGGTGGCGCGGTGCGGCGACAGGGCGAAGATCGGTACATGCGAACGCAGGCGCGACATGATCAGCGGGGTGTAGCCGCTTTCGGTCAGGGCGATGATCGCCTTTACGCCCGGGAAGTGGTTGGCAGTGTACATGGCCGCCAAGGCGATGCTTTCGTCGCAGCGCTGGAAGGTGGTGTGCAGGCGATGGCTGGACTTCTGGCTGGTCGGGTGCTTTTCGGCACC  >  NC_002947/1551576‑1551852                                                                                                                                                      |                                                                                                                                cggccggcTCGAAGGCAATCGGGTACACGCCACGGAACATCGATGCGCGCGCTTGGGTGGTGCAGGGCGGCGACAGGGCGAAGATCGGTACATGCGAACGCAGGCGCGACATGATCAGCGGGGTGTAGCCGCTTTCGGTCAGGGCgatga                                                                                                                                 <  1:8645/150‑1 (MQ=255)         tCGAAGGCAATCGGGTACACGCCACGGAACATCGAGGCGCGCGCCTGGGTGGCGCGGTGCGGCGACAGGGCGAAGATCGGTACATGCGAACGCAGGCGCGACATGATCAGCGGGGTGTAGCCGCTTTCGGTCAGGGCGATGATCGCCttt                                                                                                                         >  1:338071/1‑150 (MQ=255)                 aaTCGGGTACACGCCACGGAACATCGAGGCGCGCGCCTGGGTGGCGCGGTGCGGCGACAGGGCGAAGATCGGTACATGCGAACGCAGGCGCGACATGATCAGCGGGGTGTAGCCGCTTTCGGTCAGGGCGATGATCGCCTTTACGCCCgg                                                                                                                 <  2:526951/150‑1 (MQ=255)                     gggTACACGCCACGGAACATCGAGGCGCGCGCCTGGGTGGCGCGGTGCGGCGACAGGGCGAAGATCGGTACATGCGAACGCAGGCGCGACATGATCAGCGGGGTGTAGCCGCTTTCGGTCAGGGCGATGATCGCCTTTACGCCCGGGAAg                                                                                                             >  2:551560/1‑150 (MQ=255)                         acacGCCACGGAACATCGAGGCGCGCGCCTGGGTGGCGCGGTGCGGCGACAGGGCGAAGATCGGTACATGCGAACGCAGGCGCGACATGATCAGCGGGGTGTAGCCGCTTTCGGTCAGGGCGATGATCGCCTTTAc                                                                                                                       >  2:156507/1‑136 (MQ=255)                         acacGCCACGGAACATCGAGGCGCGCGCCTGGGTGGCGCGGTGCGGCGACAGGGCGAAGATCGGTACATGCGAACGCAGGCGCGACATGATCAGCGGGGTGTAGCCGCTTTCGGTCAGGGCGATGATCGCCTTTAc                                                                                                                       <  1:156507/136‑1 (MQ=255)                               cACGGAACATCGAGGCGCGCGCCTGGGTGGCGCGGTGCGGCGACAGGGCGAAGATCGGTACATGCGAACGCAGGCGCGACATGATCAGCGGGGTGTAGCCGCTTTCGGTCAGGGCGATGATCGCCTTTACGCCCGGGAAGTGGTTGGCAg                                                                                                   >  1:197991/1‑150 (MQ=255)                                 cGGAACATCGAGGCGCGCGCCTGGGTGGCGCGGTGCGGCGACAGGGCGAAGATCGGTACATGCGAACGCAGGCGCGACATGATCAGCGGGGTGTAGCCGCTTTCGGTCAGGGCGATGATCGCCTTTACGCCCGGGAAGTGGTTGGCAgtg                                                                                                 <  2:41953/150‑1 (MQ=255)                                   gAACATCGAGGCGCGCGCCTGGGTGGCGCGGTGCGGCGACAGGGCGAAGATCGGTACATGCGAACGCAGGCGCGACATGATCAGCGGGGTGTAGCCGCTTTCGGTCAGGGCGATGATCGCCTTTACGCCCGGGAAGTGGTTGGCAGTGTa                                                                                               >  2:293293/1‑150 (MQ=255)                                       aTCGAGGCGCGCGCCTGGGTGGCGCGGTGCGGCGACAGGGCGAAGATCGGTACATGCGAACGCAGGCGCGCCATGATCAGCGGGGTGTAGCCCCTCAAGATCCGCCTTGTGATCGCCTTTACGCCCGGGAAGTGGTTGGCAGTGTACATg                                                                                           >  1:139080/1‑150 (MQ=255)                                             gcgcgcgcCTGGGTGGCGCGGTGCGGCGACAGGGCGAAGATCGGTACATGCGAACGCAGGCGCGACATGATCAGCGGGGTGTAGCCGCTTTCGGTCAGGGCGATGATCGCCTTTACGCCCGGGAAGTGGTTGGCAGTGTACATGgccgcc                                                                                     <  1:430054/150‑1 (MQ=255)                                                    ccTGGGTGGCGCGGTGCGGCGACAGGGCGAAGATCGGTACATGCGAACGCAGGCGCGACATGATCAGCGGGGTGTAGCCGCTTTCGGTCAGGGCGATGATCGCCTTTACGCCCGGGAAGTGGTTGGCAGTGTACATGGCCGCCAAGGCGa                                                                              <  2:558798/150‑1 (MQ=255)                                                     cTGGGTGGCGCGGTGCGGCGACAGGGCGAAGATCGGTACATGCGAACGCAGGCGCGACATGATCAGCGGGGTGTAGCCGCTTTCGGTCAGGGCGATGATCGCCTTTACGCCCGGGAAGTGGTTGGCAGTGTACATGGCCGCCAAGGCGAt                                                                             <  2:227499/150‑1 (MQ=255)                                                      gccatggcacgcatctgcctgggtgccgaaaagcacccgaccagccagaagtccagccatcgcctgcacaccaccttccagcgctgcgacgaaagcATCGCCTTTACGCCCGGGAAGTGGTTGGCAGTGTACATGGCCGCCAAGGCGATg                                                                            >  2:402293‑M1/97‑150 (MQ=255)                                                           ggCGCGGTGCGGCGACAGGGCGAAGATCGGTACATGCGAACGCAGGCGCGACATGATCAGCGGGGTGTAGCCGCTTTCGGTCAGGGCGATGATCGCCTTTACGCCCGGGAAGTGGTTGGCAGTGTACATGGCCGCCAAGGCGATGCTTtc                                                                       <  1:551560/150‑1 (MQ=255)                                                           ggCGCGGTGCGGCGACAGGGCGAAGAACGGGACATGCGAACGCAGGCGCGACATGATCAGCGGGGTGTAGCCGCTTTCGGTCAGGGCGATGATCGCCTTTACGCCCGGGAAGTGGTTGGCAGTGTACATGGCCGCCAAGGCGATGCTTtc                                                                       <  1:157148/150‑1 (MQ=255)                                                             cgcgGTGCGGCGACAGGGCGAAGATCGGTACATGCGAACGCAGGCGCGACATGATCAGCGGGGTGTAGCCGCTTTCGGTCAGGGCGATGATc                                                                                                                               >  1:176135/1‑92 (MQ=255)                                                             cgcgGTGCGGCGACAGGGCGAAGATCGGTACATGCGAACGCAGGCGCGACATGATCAGCGGGGTGTAGCCGCTTTCGGTCAGGGCGATGATc                                                                                                                               <  2:176135/92‑1 (MQ=255)                                                              gcgGTGCGGCGACAGGGCGAAGATCGGTACATGCGAACGCAGGCGCGACATGATCAGCGGGGTGTAGCCGCTTTCGGTCAGGGCGATGATCGCCTTTACGCCCGGGAAGTGGTTGGCAGTGTACATGGCCGCCAAGGCGATGCTTtcgtc                                                                    >  1:213171/1‑150 (MQ=255)                                                                              gCGAAGATCGGTACATGCGAACGCAGGCGCGACATGATCAGCGGGGTGTAGCCGCTTTCGGTCAGGGCGATGATCGCCTTTACGCCCGGGAAGTGGTTGGCAGTGTACATGGCCGCCAAGGCGATGCTTTCGTCGCAGCGCTGGAAggtg                                                    >  2:567123/1‑150 (MQ=255)                                                                                gAAGATCGGTACATGCGAACGCAGGCGCGACATGATCAGCGGGGTGTAGCCGCTTTCGGTCAGGGCGCGCCTCGTCTTTACGCCCGGGAAGTGGTTGGCAGTGTACATGGCCGCCAAGGCGATGCTTTCGTCGCAGCGCTGGAAggtggt                                                  <  1:568505/150‑1 (MQ=255)                                                                                      cGGTACATGCGAACGCAGGCGCGACATGATCAGCGGGGTGTAGCCGCTTTCGGTCAGGGCGATGATCGCCTTTACGCCCGGGAAGTGGTTGGCAGTGTACATGGCCGCCAAGGCGATGCTTTCGTCGCAGCGCTGGAAGGTGGTGTGCAg                                            <  1:496090/150‑1 (MQ=255)                                                                                           cATGCGAACGCAGGCGCGACATGATCAGCGGGGTGTAGCCGCTTTCGGTCAGGGCGATGATCGCCTTTACGCCCGGGAAGTGGTTGGCAGTGTACATGGCCGCCAAGGCGATGCTTTCGTCGCAGCGCTGGAAGGTGGTGTGCAGGCGAt                                       <  1:293293/150‑1 (MQ=255)                                                                                                gAACGCAGGCGCGACATGATCAGCGGGGTGTAGCCGCTTTCGGTCAGGGCGATGATCGCCTTTACGCCCGGGAAGTGGTTGGCAGTGTACATGGCCGCCAAGGCGATGCTTTCGTCGCAGCGCTGGAAGGTGGTGTGCAGGCGATGGCTg                                  <  1:594156/150‑1 (MQ=255)                                                                                                   cGCAGGCGCGACATGATCAGCGGGGTGTAGCCGCTTTCGGTCAGGGCGATGATCGCCTTTACGCCCGGGAAGTGGTTGGCAGTGTACATGGCCGCCAAGGCGATGCTTTCGTCGCAGCGCTGGAAGGTGGTGTGCAGGCGATGGCTGGAc                               <  2:314003/150‑1 (MQ=255)                                                                                                          gcgACATGATCAGCGGGGTGTAGCCGCTTTCGGTCAGGGCGATGATCGCCTTTACGCGCGGGAAGTGGTTGGCAGTGTACATGGCCGCCAAGGCGATGCTTTCGTCGGAGCGCTGGAAGGTGGTGTGCAGGCGATGGCTGGACTTctggc                        >  1:191776/1‑150 (MQ=255)                                                                                                          gcgACATGATCAGCGGGGTGTAGCCGCTTTCGGTCAGGGCGATGATCGCCTTTACGCCCGGGAAGTGGTTGGCAGTGTACATGGCCGCCAAGGCGATGCTTTCGTCGCAGCGCTGGAAGGTGGTGTGCAGGCGATGGCTGGACTTctggc                        <  2:213171/150‑1 (MQ=255)                                                                                                            agccatcgcctgcacaccaccttccagcgctgcgacgaaagcATCGCCTTTACGCCCGGGAAGTGGTTGGCAGTGTACATGGCCGCCAAGGCGATGCTTtcgtcg                                                                   >  2:189430‑M1/43‑105 (MQ=255)                                                                                                            agccatcgcctgcacaccaccttccagcgctgcgacgaaagcATCGCCTTTACGCCCGGGAAGTGGTTGGCAGTGTACATGGCCGCCAAGGCGATGCTTtcgtcg                                                                   <  1:189430‑M1/63‑1 (MQ=255)                                                                                                               aTGATCAGCGGGGTGTAGCCGCTTTCGGTCAGGGCGATGATCGCCTTTACGCCCGGGAAGTGGTTGGCAGTGTACATGGCCGCCAAGGCGATGCTTTCGTCGCAGCGCTGGAAGGTGGTGTGCAGGCGATGGCTGGACTTCTGGCTGGTc                   >  2:106709/1‑150 (MQ=255)                                                                                                                          ggTGTAGCCGCTTTCGGTCAGGGCGATGATCGCCTTTACGCCCGGGAAGTGGTTGGCAGTGTACATGGCCGCCAGCGCGTTGCTTTCGTCGCAGCGCTGAAAGGTCCGGTGCGGGCTTTGTCTGGACTTCTGGCTGGTCGGGTGCTTTTc        >  1:139052/1‑150 (MQ=255)                                                                                                                          ggTGTAGCCGCTTTCGGTCAGGGCGATGATCGCCTTTACGCCCGGGAAGTGGTTGGCAGTGTACATGGCCGCCAAGGCGATGCTTTCGTCGCAGCGCTGGAAGGTGGTGTGCAGGCGATGGCTGGACTTCTGGCTGGTCGGGTGCTTTTc        <  2:197991/150‑1 (MQ=255)                                                                                                                              tAGCCGCTTTCGGTCAGGGCGATGATCGCCTTTACGCCCGGGAAGTGGTTGGCAGTGTACATGGCCGCCAAGGCGATGCTTTCGTCGCAGCGCTGGAAGGTGGTGTGCAGGCGATGGCTGGACTTCTGGCTGGTCGGGTGCTTTTCGGCa    >  1:290174/1‑150 (MQ=255)                                                                                                                                gCCGCTTTCGGTCAGGGCGATGATCGCCTTTACGCCCGGGAAGTGGTTGGCAGTGTACATGGCCGCCAAGGCGATGCTTTCGTCGCAGCGCTGGAAGGTGGTGTGCAGGCGATGGCTGGACTTCTGGCTGGTCGGGTGCTTTTCGGCAcc  >  2:60492/1‑150 (MQ=255)                                                                                                                                gCCGCTTTCGGTCAGGGCGATGATCGCCTTTACGCCCGGGAAGTGGTTGGCAGTGTACATGGCCGCCAAGGCGATGCTTTCGTCGCAGCGCTGGAAGGTGGTGTGCAGGCGATGGCTGGACTTCTGGCTGGTCGGGTGCTTTTCGGCAcc  >  1:300394/1‑150 (MQ=255)                                                                                                                                               ggCGATGATCGCCTTTACGCCCGGGAAGTGGTTGGCAGTGTACATGGCCGCCAAGGCGATGCt                                                                          >  1:154691/1‑63 (MQ=255)                                                                                                                                               ggCGATGATCGCCTTTACGCCCGGGAAGTGGTTGGCAGTGTACATGGCCGCCAAGGCGATGCt                                                                          <  2:154691/63‑1 (MQ=255)                                                                                                                                               ggCGATGATCGCCTTTACGCCCGGGAAGTGGTTGGCAGTGTACATGGCCGCCAAGGCGATGCTTTCGTCGCAGCGCTGGAAGGTGGTGTGCAGGCGATGGCTGGACTTCTGGCTGGTCGGGTGCTTTTc        <  2:319317/129‑1 (MQ=255)                                                                                                                                               ggCGATGATCGCCTTTACGCCCGGGAAGTGGTTGGCAGTGTACATGGCCGCCAAGGCGATGCTTTCGTCGCAGCGCTGGAAGGTGGTGTGCAGGCGATGGCTGGACTTCTGGCTGGTCGGGTGCTTTTc        >  1:319317/1‑129 (MQ=255)                                                                                                                                                     gatCGCCTTTACGCCCGGGAAGTGGTTGGCAGTGTACATGGCCGCCAAGGCGATGCTTTCGTCGCAGCGCTGGAAGGTGGTGTGCAGGCGATGGCTGGACTTct                           <  2:299657/104‑1 (MQ=255)                                                                                                                                                     gatCGCCTTTACGCCCGGGAAGTGGTTGGCAGTGTACATGGCCGCCAAGGCGATGCTTTCGTCGCAGCGCTGGAAGGTGGTGTGCAGGCGATGGCTGGACTTct                           >  1:299657/1‑104 (MQ=255)                                                                                                                                                     gatCGCCTTTACGCCCGGGAAGTGGTTGGCAGTGTACATGGCCGCCAAGGCGATGCTTTCGTCGCAGCGCTGGAAGGTGGTGTGCAGGCGATGGCTGGACTTct                           >  1:299494/1‑104 (MQ=255)                                                                                                                                                     gatCGCCTTTACGCCCGGGAAGTGGTTGGCAGTGTACATGGCCGCCAAGGCGATGCTTTCGTCGCAGCGCTGGAAGGTGGTGTGCAGGCGATGGCTGGACTTct                           <  2:299494/104‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                CGGCCGGGTCGAAGGCAATCGGGTACACGCCACGGAACATCGAGGCGCGCGCCTGGGTGGCGCGGTGCGGCGACAGGGCGAAGATCGGTACATGCGAACGCAGGCGCGACATGATCAGCGGGGTGTAGCCGCTTTCGGTCAGGGCGATGATCGCCTTTACGCCCGGGAAGTGGTTGGCAGTGTACATGGCCGCCAAGGCGATGCTTTCGTCGCAGCGCTGGAAGGTGGTGTGCAGGCGATGGCTGGACTTCTGGCTGGTCGGGTGCTTTTCGGCACC  >  NC_002947/1551576‑1551852

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.