New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1551725 =	33 (1.430)	3 (0.140)	3/234	NT	9.4%	coding (1139/1455 nt)	pykA	pyruvate kinase II
	?	NC_002947	1551778 =	27 (1.250)					coding (1086/1455 nt)	pykA	pyruvate kinase II

TGGGTGGCGCGGTGCGGCGACAGGGCGAAGATCGGTACATGCGAACGCAGGCGCGACATGATCAGCGGGGTGTAGCCGCTTTCGGTCAGGGCGATGATCGCCTTTACGCCCGGGAAGTGGTTGGCAGTGTACATGGCCGCCAAGGCGATGCTTTCGTCGCAGCGCTGGAAGGTGGTGTGCAGGCGATGGCTGGACTTCTGGCTGGTCGGGTGCTTTTCGGCACCCAGGCAGATGCGTGCCATGGCCTGGACAGCTTCGATCGGGTAGGAACCGGCGGCGCTTTCGGCCGACAGCATCAC  >  NC_002947/1551629‑1551927                                                                                                                                                      |                                                                                                                                                      gccatggcacgcatctgcctgggtgccgaaaagcacccgaccagccagaagtccagccatcgcctgcacaccaccttccagcgctgcgacgaaagcATCGCCTTTACGCCCGGGAAGTGGTTGGCAGTGTACATGGCCGCCAAGGCGATg                                                                                                                                                       >  2:402293‑M1/97‑150 (MQ=255)      ggCGCGGTGCGGCGACAGGGCGAAGATCGGTACATGCGAACGCAGGCGCGACATGATCAGCGGGGTGTAGCCGCTTTCGGTCAGGGCGATGATCGCCTTTACGCCCGGGAAGTGGTTGGCAGTGTACATGGCCGCCAAGGCGATGCTTtc                                                                                                                                                  <  1:551560/150‑1 (MQ=255)      ggCGCGGTGCGGCGACAGGGCGAAGAACGGGACATGCGAACGCAGGCGCGACATGATCAGCGGGGTGTAGCCGCTTTCGGTCAGGGCGATGATCGCCTTTACGCCCGGGAAGTGGTTGGCAGTGTACATGGCCGCCAAGGCGATGCTTtc                                                                                                                                                  <  1:157148/150‑1 (MQ=255)         gcgGTGCGGCGACAGGGCGAAGATCGGTACATGCGAACGCAGGCGCGACATGATCAGCGGGGTGTAGCCGCTTTCGGTCAGGGCGATGATCGCCTTTACGCCCGGGAAGTGGTTGGCAGTGTACATGGCCGCCAAGGCGATGCTTtcgtc                                                                                                                                               >  1:213171/1‑150 (MQ=255)                         gCGAAGATCGGTACATGCGAACGCAGGCGCGACATGATCAGCGGGGTGTAGCCGCTTTCGGTCAGGGCGATGATCGCCTTTACGCCCGGGAAGTGGTTGGCAGTGTACATGGCCGCCAAGGCGATGCTTTCGTCGCAGCGCTGGAAggtg                                                                                                                               >  2:567123/1‑150 (MQ=255)                           gAAGATCGGTACATGCGAACGCAGGCGCGACATGATCAGCGGGGTGTAGCCGCTTTCGGTCAGGGCGCGCCTCGTCTTTACGCCCGGGAAGTGGTTGGCAGTGTACATGGCCGCCAAGGCGATGCTTTCGTCGCAGCGCTGGAAggtggt                                                                                                                             <  1:568505/150‑1 (MQ=255)                                 cGGTACATGCGAACGCAGGCGCGACATGATCAGCGGGGTGTAGCCGCTTTCGGTCAGGGCGATGATCGCCTTTACGCCCGGGAAGTGGTTGGCAGTGTACATGGCCGCCAAGGCGATGCTTTCGTCGCAGCGCTGGAAGGTGGTGTGCAg                                                                                                                       <  1:496090/150‑1 (MQ=255)                                      cATGCGAACGCAGGCGCGACATGATCAGCGGGGTGTAGCCGCTTTCGGTCAGGGCGATGATCGCCTTTACGCCCGGGAAGTGGTTGGCAGTGTACATGGCCGCCAAGGCGATGCTTTCGTCGCAGCGCTGGAAGGTGGTGTGCAGGCGAt                                                                                                                  <  1:293293/150‑1 (MQ=255)                                           gAACGCAGGCGCGACATGATCAGCGGGGTGTAGCCGCTTTCGGTCAGGGCGATGATCGCCTTTACGCCCGGGAAGTGGTTGGCAGTGTACATGGCCGCCAAGGCGATGCTTTCGTCGCAGCGCTGGAAGGTGGTGTGCAGGCGATGGCTg                                                                                                             <  1:594156/150‑1 (MQ=255)                                              cGCAGGCGCGACATGATCAGCGGGGTGTAGCCGCTTTCGGTCAGGGCGATGATCGCCTTTACGCCCGGGAAGTGGTTGGCAGTGTACATGGCCGCCAAGGCGATGCTTTCGTCGCAGCGCTGGAAGGTGGTGTGCAGGCGATGGCTGGAc                                                                                                          <  2:314003/150‑1 (MQ=255)                                                     gcgACATGATCAGCGGGGTGTAGCCGCTTTCGGTCAGGGCGATGATCGCCTTTACGCGCGGGAAGTGGTTGGCAGTGTACATGGCCGCCAAGGCGATGCTTTCGTCGGAGCGCTGGAAGGTGGTGTGCAGGCGATGGCTGGACTTctggc                                                                                                   >  1:191776/1‑150 (MQ=255)                                                     gcgACATGATCAGCGGGGTGTAGCCGCTTTCGGTCAGGGCGATGATCGCCTTTACGCCCGGGAAGTGGTTGGCAGTGTACATGGCCGCCAAGGCGATGCTTTCGTCGCAGCGCTGGAAGGTGGTGTGCAGGCGATGGCTGGACTTctggc                                                                                                   <  2:213171/150‑1 (MQ=255)                                                       agccatcgcctgcacaccaccttccagcgctgcgacgaaagcATCGCCTTTACGCCCGGGAAGTGGTTGGCAGTGTACATGGCCGCCAAGGCGATGCTTtcgtcg                                                                                                                                              <  1:189430‑M1/63‑1 (MQ=255)                                                       agccatcgcctgcacaccaccttccagcgctgcgacgaaagcATCGCCTTTACGCCCGGGAAGTGGTTGGCAGTGTACATGGCCGCCAAGGCGATGCTTtcgtcg                                                                                                                                              >  2:189430‑M1/43‑105 (MQ=255)                                                          aTGATCAGCGGGGTGTAGCCGCTTTCGGTCAGGGCGATGATCGCCTTTACGCCCGGGAAGTGGTTGGCAGTGTACATGGCCGCCAAGGCGATGCTTTCGTCGCAGCGCTGGAAGGTGGTGTGCAGGCGATGGCTGGACTTCTGGCTGGTc                                                                                              >  2:106709/1‑150 (MQ=255)                                                                     ggTGTAGCCGCTTTCGGTCAGGGCGATGATCGCCTTTACGCCCGGGAAGTGGTTGGCAGTGTACATGGCCGCCAGCGCGTTGCTTTCGTCGCAGCGCTGAAAGGTCCGGTGCGGGCTTTGTCTGGACTTCTGGCTGGTCGGGTGCTTTTc                                                                                   >  1:139052/1‑150 (MQ=255)                                                                     ggTGTAGCCGCTTTCGGTCAGGGCGATGATCGCCTTTACGCCCGGGAAGTGGTTGGCAGTGTACATGGCCGCCAAGGCGATGCTTTCGTCGCAGCGCTGGAAGGTGGTGTGCAGGCGATGGCTGGACTTCTGGCTGGTCGGGTGCTTTTc                                                                                   <  2:197991/150‑1 (MQ=255)                                                                         tAGCCGCTTTCGGTCAGGGCGATGATCGCCTTTACGCCCGGGAAGTGGTTGGCAGTGTACATGGCCGCCAAGGCGATGCTTTCGTCGCAGCGCTGGAAGGTGGTGTGCAGGCGATGGCTGGACTTCTGGCTGGTCGGGTGCTTTTCGGCa                                                                               >  1:290174/1‑150 (MQ=255)                                                                           gCCGCTTTCGGTCAGGGCGATGATCGCCTTTACGCCCGGGAAGTGGTTGGCAGTGTACATGGCCGCCAAGGCGATGCTTTCGTCGCAGCGCTGGAAGGTGGTGTGCAGGCGATGGCTGGACTTCTGGCTGGTCGGGTGCTTTTCGGCAcc                                                                             >  2:60492/1‑150 (MQ=255)                                                                           gCCGCTTTCGGTCAGGGCGATGATCGCCTTTACGCCCGGGAAGTGGTTGGCAGTGTACATGGCCGCCAAGGCGATGCTTTCGTCGCAGCGCTGGAAGGTGGTGTGCAGGCGATGGCTGGACTTCTGGCTGGTCGGGTGCTTTTCGGCAcc                                                                             >  1:300394/1‑150 (MQ=255)                                                                                       cgacgaaagcatcgccttggcggccatgtacactgccaaccacttcccgggcgtaaaggcgatGCTTTCGTCGCAGCGCTGGAAGGTGGTGTGCAGGCGATGGCt                                                                                                              <  1:189430‑M2/42‑1 (MQ=255)                                                                                       cgacgaaagcatcgccttggcggccatgtacactgccaaccacttcccgggcgtaaaggcgatGCTTTCGTCGCAGCGCTGGAAGGTGGTGTGCAGGCGATGGCt                                                                                                              >  2:189430‑M2/64‑105 (MQ=255)                                                                                          ggCGATGATCGCCTTTACGCCCGGGAAGTGGTTGGCAGTGTACATGGCCGCCAAGGCGATGCt                                                                                                                                                     >  1:154691/1‑63 (MQ=255)                                                                                          ggCGATGATCGCCTTTACGCCCGGGAAGTGGTTGGCAGTGTACATGGCCGCCAAGGCGATGCt                                                                                                                                                     <  2:154691/63‑1 (MQ=255)                                                                                          ggCGATGATCGCCTTTACGCCCGGGAAGTGGTTGGCAGTGTACATGGCCGCCAAGGCGATGCTTTCGTCGCAGCGCTGGAAGGTGGTGTGCAGGCGATGGCTGGACTTCTGGCTGGTCGGGTGCTTTTc                                                                                   >  1:319317/1‑129 (MQ=255)                                                                                          ggCGATGATCGCCTTTACGCCCGGGAAGTGGTTGGCAGTGTACATGGCCGCCAAGGCGATGCTTTCGTCGCAGCGCTGGAAGGTGGTGTGCAGGCGATGGCTGGACTTCTGGCTGGTCGGGTGCTTTTc                                                                                   <  2:319317/129‑1 (MQ=255)                                                                                                gatCGCCTTTACGCCCGGGAAGTGGTTGGCAGTGTACATGGCCGCCAAGGCGATGCTTTCGTCGCAGCGCTGGAAGGTGGTGTGCAGGCGATGGCTGGACTTct                                                                                                      <  2:299494/104‑1 (MQ=255)                                                                                                gatCGCCTTTACGCCCGGGAAGTGGTTGGCAGTGTACATGGCCGCCAAGGCGATGCTTTCGTCGCAGCGCTGGAAGGTGGTGTGCAGGCGATGGCTGGACTTct                                                                                                      <  2:299657/104‑1 (MQ=255)                                                                                                gatCGCCTTTACGCCCGGGAAGTGGTTGGCAGTGTACATGGCCGCCAAGGCGATGCTTTCGTCGCAGCGCTGGAAGGTGGTGTGCAGGCGATGGCTGGACTTct                                                                                                      >  1:299657/1‑104 (MQ=255)                                                                                                gatCGCCTTTACGCCCGGGAAGTGGTTGGCAGTGTACATGGCCGCCAAGGCGATGCTTTCGTCGCAGCGCTGGAAGGTGGTGTGCAGGCGATGGCTGGACTTct                                                                                                      >  1:299494/1‑104 (MQ=255)                                                                                                catcgccttggcggccatgtacactgccaaccacttcccgggcgtaaaggcgatGCTTTCGTCGCAGCGCTGGAAGGTGGTGTGCAGGCGATGGCTGGACTTCTGGCTGGTCGGGTGCTTTTCGGCACCCAGGCAGATGCGTGCCATGGc                                                        >  2:402293‑M2/55‑150 (MQ=255)                                                                                                   CGCCTTTACGCCCGGGAAGTGGTTGGCAGTGTACATGGCCGCCAAGGCGATGCTTTCGTCGCAGCGCTGGAAGGTGGTGTGCAGGCGATGGCTGGACTTCTGGCTGGTCGGGTGCTTTTCGGCACCCAGGCAGATGCGTGCCATGGCCTg                                                     >  2:139080‑M1/1‑150 (MQ=255)                                                                                                          aCGCCCGGGAAGTGGTTGGCAGTGTACATGGCCGCCAAGGCGATGCTTTCGTCGCAGCGCTGGAAGGTGGTGTGCAGGCGATGGCTGGACTTCTGGCTGGTCGGGTGCTTTTCGGCACCCAGGCAGATGCGTGCCATGGCCTGGACAGCt                                              <  2:300394/150‑1 (MQ=255)                                                                                                                               gtgtACATGGCCGCCAAGGCGATGCTTTCGTCGCAGCGCTGGAAGGTGGTGTGCAGGCGATGGCTGGACTTCTGGCTGGTCGGGTGCTTTTCGGCACCCAGGCAGATGCGTGCCATGGCCTGGACAGCTTCGa                                          <  1:472609/133‑1 (MQ=255)                                                                                                                               gtgtACATGGCCGCCAAGGCGATGCTTTCGTCGCAGCGCTGGAAGGTGGTGTGCAGGCGATGGCTGGACTTCTGGCTGGTCGGGTGCTTTTCGGCACCCAGGCAGATGCGTGCCATGGCCTGGACAGCTTCGa                                          >  2:472609/1‑133 (MQ=255)                                                                                                                                   aCATGGCCGCCAAGGCGATGCTTTCGTCGCAGCGCTGGAAGGTGGTGTGCAGGCGATGGCTGGACTTCTGGCTGGTCGGGTGCTTTTCGGCACCCAGGCAGATGCGTGCCATGGCCTGGACAGCTTCGATCGGGTAGGAACCGGCGgcgc                     >  2:176887/1‑150 (MQ=255)                                                                                                                                         ccgccAAGGCGATGCTTTCGTCGCAGCGCTGGAAGGTGGTGTGCAGGCGATGGCTGGACTTCTGGCTGGTCGGGTGCTTTTCGGCACCCAGGCAGATGCGTGCCATGGCCTGGACAGCTTCGATCGGGTAGGAACCGGCGGCGCTTTCgg               <  2:139052/150‑1 (MQ=255)                                                                                                                                          cgccAAGGCGATGCTTTCGTCGCAGCGCTGGAAGGTGGTGTGCAGGCGATGGCTGGACTTCTGGCTGGTCGGGTGCTTTTCGGCACCCAGGCAGATGCGTGCCATGGCCTGGACAGCTTCGATCGGGTAGGAACCGGCGGCGCTTTCGGc              >  1:517650/1‑150 (MQ=255)                                                                                                                                            ccAAGGCGATGCTTTCGTCGCAGCGCTGGAAGGTGGTGTGCAGGCGATGGCTGGACTTCTGGCTGGTCGGGTGCTTTTCGGCACCCAGGCAGATGCGTGCCATGGCCTGGACAGCTTCGATCGGGTAGGAACCGGCGGCGCTTTCGGCCg            <  2:290174/150‑1 (MQ=255)                                                                                                                                             cAAGGCGATGCTTTCGTCGCAGCGCTGGAAGGTGGTGTGCAGGCGATGGCTGGACTTCTGGCTGGTCGGGTGCTTTTCGGCACCCAGGCAGATGCGTGCCATGGCCTGGACAGCTTCGATCGGGTAGGAACCGGCGGCGCTTTCGGCCGa           <  1:567123/150‑1 (MQ=255)                                                                                                                                                      gCTTTCGTCGCAGCGCTGGAAGGTGGTGTGCAGCCATAGACTGGACTTCTGGCTGGTCGGGTGCTTTTCGGCACCCAGGCAGATGCGTGCCATGGCCTGGACAGCTTCGATCGGGTAGGAACCGGCGGCGCTTTCGGCCGACAGCATCAc  >  1:580231/1‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                                      TGGGTGGCGCGGTGCGGCGACAGGGCGAAGATCGGTACATGCGAACGCAGGCGCGACATGATCAGCGGGGTGTAGCCGCTTTCGGTCAGGGCGATGATCGCCTTTACGCCCGGGAAGTGGTTGGCAGTGTACATGGCCGCCAAGGCGATGCTTTCGTCGCAGCGCTGGAAGGTGGTGTGCAGGCGATGGCTGGACTTCTGGCTGGTCGGGTGCTTTTCGGCACCCAGGCAGATGCGTGCCATGGCCTGGACAGCTTCGATCGGGTAGGAACCGGCGGCGCTTTCGGCCGACAGCATCAC  >  NC_002947/1551629‑1551927

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.