New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 1251009 = | 18 (0.780) | 3 (0.140) | 3/234 | NT | 16.7% | coding (268/549 nt) | PP_1093 | electron transport complex protein |
? | NC_002947 | 1251060 = | 13 (0.600) | coding (217/549 nt) | PP_1093 | electron transport complex protein |
GTGCCTTGCGAGCAGGCGCCAGCGGCGTTGGTCAGGTAGCAGGTGGTCACTGGCCAGGCATTGCAGGCACAACAATGCGGGATAGTGGCCCAGGGCAATGGCCAGTGGTAGCAGCCAGGCCCGCAGGGCCAACTGCAGGCAACTGGCCAAGGCTGCCAGCAGCAACAGGCTAGCCAGTACATAGGCCCAGCTGGCCATGTGTTTACGCAGTGGCGCCAGCAACAGTTGGTGCAGGCACCCCATCAGTACTGCGCACAGGCCGATGGCCGCGCCTTCAGCCAGCGTTCGGGT > NC_002947/1250911‑1251201 | gTGCCTTGCGAGCAGGCGCCAGCGGCGTTGGTCAGGTAGCAGGTGGTCACTGGCCAGGCATTGCAGGCACAACAATGCGGGATAGTGGCCCAGGGCAATGGCCAGTGGTAGCAGCCAGGCCCGCAGGGCCACCTGCAGGCAACTGGCCaa > 2:266796/1‑150 (MQ=255) gTGCCTTGCGAGCAGGCGCCAGCGGCGTTGGTCAGGTAGCAGGTGGTCACTGGCCAGGCATTGCAGGCACAACAATGCGGGATAGTGGCCCAGGGCAATGGCCAGTGGTAGCAGCCAGGCCCGCAGGGCCAACTGCAGGCAACTGGCCaa < 1:590087/150‑1 (MQ=255) gTGCCTTCCGAGCAGGCGCCAGCGGCGTTGGTCAGGTAGCAGGCGGTCTGATAGTAGTGATTGCAGGCACAACAATGCGGGATAGTGGCCCAGGGCAATGGCCAGTGGTAGCAGCCAGGCCCGCAGGGCCAACTGCAGGCAACTGGCCaa < 2:324584/150‑1 (MQ=255) actgatggggtgcctgcaccaactgttgctggcgccactgcgtaaacacatggccagctgggcctatgtactggctagcctgttgctgctggcagcctTGGCCAGTGGTAGCAGCCAGGCCCGCAGGGCCAACTGCAGGCAACTGGTCaa > 1:150200‑M1/99‑150 (MQ=255) tGCGAGCAGGCGCCAGCGGCGTTGGTCAGGTAGCAGGTGGTCACTGGCCAGGCATTGCAGGCACAACAATGCGGGATAGTGGCCCAGGGCAATGGCCAGTGGTAGCAGCCAGGCCCGCAGGGCCAACTGCAGGCAACTGGCCAAGGCTGc < 2:231483/150‑1 (MQ=255) gcgcCAGCGGCGTTGGTCAGGTAGCAGGTGGTCACTGGCCAGGCATTGCAGGCACAACAATGCGGGATAGTGGCCCAGGGCAATGGCCAGTGGTAGCAGCCAGGCCCGCAGGGCCAACTGCAGGCAACTGGCCAAGGCTGCCAGCAGCaa < 2:201128/150‑1 (MQ=255) aGCAGGTGGTCACTGGCCAGGCATTGCAGGCACAACAATGCGGGATAGTGGCCCAGGGCAATGGCCAGTGGTAGCAGCCAGGCCCGCAGGGCCAACTGCAGGCAACTGGCCAAGGCTGCCAGCAGCAACAGGCTAGCCAGTACATAGGcc < 1:21190/150‑1 (MQ=255) gtggtCACTGGCCAGGCATTGCAGGCACAACAATGCGGGATAGTGGCCCAGGGCAATGGCCAGTGGTAGCAGCCAGGCCCGCAGGGCCAACTGCAGGCAACTGGCCAAGGCTGCCAGCAGCAACAGGCTAGCCAGTACATAGGCCCAGCt > 2:221004/1‑150 (MQ=255) tggtCACTGGCCAGGCATTGCAGGCACAACAATGCGGGATAGTGGCCCAGGGCAATGGCCAGTGGTAGCAGCCAGGCCCGCAGGGCCAACTGCAGGCAACTGGCCAAGGCTGCCAGCAGCAACAGGCTAGCCAGTACATAGGCCCAGCTg > 1:301382/1‑150 (MQ=255) aacaaTGCGGGATAGTGGCCCAGGGCAATGGCCAGTGGTAGCAGCCAGGCCCGCAGGGCCAACTGCAGGCAACTGGCCAAGGCTGCCAGCAGCAACAGGCTAGCCAGTACATAGGCCCAGCTGGCCATGTGTTTACGCAGTg < 1:504992/142‑1 (MQ=255) aacaaTGCGGGATAGTGGCCCAGGGCAATGGCCAGTGGTAGCAGCCAGGCCCGCAGGGCCAACTGCAGGCAACTGGCCAAGGCTGCCAGCAGCAACAGGCTAGCCAGTACATAGGCCCAGCTGGCCATGTGTTTACGCAGTg > 2:504992/1‑142 (MQ=255) ccAGGGCAATGGCCAGTGGTAGCAGCCAGGCCCGCAGGGCCAACTGCAGGCAACTGGCCAAGGCTGCCAGCAGCAACAGGCTAGCCAGTACATAGGCCCAGCTGGCCATGTGTTTACGCAGTGGCGCCAGCAACAGTTGGTGCAGGCAcc < 1:521131/150‑1 (MQ=255) ggCAATGGCCAGTGGTAGCAGCCAGGCCCGCAGGGCCAACTGCAGGCAACTGGCCAAGGCTGCCAGCAGCAACAGGCTAGCCAGTACATAGGCCCAGCTGGCCATGTGTTTACGCAGTGGCGCCAGCAACAGTTGGTGCAGGCACCCCAt < 1:148428/150‑1 (MQ=255) aaTGGCCAGTGGTAGCAGACAGGCCCGCAGGGCCAACTGCAGGCAACTGGCCAAGGCTGCCAGCAGCAACAGGCTAGCCAGTACATAGGCCCAGCTGGCCATGTGTTTACGCAGTGGCGCCAGCAACAGTTGGTGCAGGCACCCCATCAg > 2:257681/1‑150 (MQ=255) ttgaccagttgcctgcagttggccctgcgggcctggctgctaccactggccaAGGCTGCCAGCAGCAACAGGCTAGCCAGTACATAGGCCCAGCTGGCCATGTGTTTACGCAGTGGCGCCAGCAACAGTTGGTGCAGGCACCCCATCAGt > 1:150200‑M2/53‑150 (MQ=255) GCCAGTGGTAGCAGCCAGGCCCGCAGGGCCAACTGCAGGCAACTGGCCAAGGCTGCCAGCAGCAACAGGCTAGCCAGTACATAGGCCCAGCTGGCCAtgt < 1:439565‑M1/100‑1 (MQ=255) GCCAGTGGTAGCAGCCAGGCCCGCAGGGCCAACTGCAGGCAACTGGCCAAGGCTGCCAGCAGCAACAGGCTAGCCAGTACATAGGCCCAGCTGGCCAtgt > 2:439565‑M1/1‑100 (MQ=255) cagttgcctgcagttggccctgcgggcctggctgctaccactggccaAGGCTGCCAGCAGCAACAGGCTAGCCAGTACATAGGCCCAGCTGGcc < 2:605443‑M2/47‑1 (MQ=255) cagttgcctgcagttggccctgcgggcctggctgctaccactggccaAGGCTGCCAGCAGCAACAGGCTAGCCAGTACATAGGCCCAGCTGGcc > 1:605443‑M2/48‑94 (MQ=255) TGGTAGCAGCCAGGCCCGCAGGGCCAACTGCAGGCAACTGGCCAAGGCTGCCAGCAGCAACAGGCTAGCCAGTACATAGGCCCAGCTGGCCATGTGTTTACGCAGTGGCGCCAGCAACAGTTGGTGCAGGCACCCCATCAGTACTGCGCa > 2:408192‑M1/1‑150 (MQ=255) gcCAGGCCCGCAGGGCCAACTGCAGGCAACTGGCCAAGGCTGCCAGCAGCAACAGGCTAGCCAGTACATAGGCCCAGCTGGCCATGTGTTTACGCAGTGGCGCCAGCAACAGTTGGTGCAGGCACCCCATCAGTACTGCGCACAGGCCGa < 2:301382/150‑1 (MQ=255) aGGCCCGCAGGGCCAACTGCAGGCAACTGGCCAAGGCTGCCAGCAGCAACAGGCTAGCCAGTACATAGGCCCAGCTGGCCATGTGTTTACGCAGTGGCGCCAGCAACAGTTGGTGCAGGCACCCCATCAGTACTGCGCACAGGCCGATgg < 2:175059/150‑1 (MQ=255) tGCAGGCAACTGGCCAAGGCTGCCAGCAGCAACAGGCTAGCCAGTACATAGGCCCAGCTGGCCATGTGTTTACGCAGTGGCGCCAGCAACAGTTGGTGCAGGCACCCCATCAGTACTGCGCACAGGCCGATGGCCGCGCCTTcagccagc > 2:355010/1‑150 (MQ=255) actggccaAGGCTGCCAGCAGCAACAGGCTAGCCAGTACATAGGCCCAGCTGGCCATGTGTTTACGCTGTGGCGCCAGCAACAGTTGGTGCAGGCACCCCATCAGTACTGCGCACAGGCCGATGGCCGCGCCTTCAGCCAGCGTTCGGGt < 1:221004‑M2/142‑1 (MQ=255) tggccaAGGCTGCCAGCAGCAACAGGCTAGCCAGTACATAGGCCCAGCTGGCCATGTGTTTACGCAGTGGCGCCAGCAACAGt < 2:230869‑M2/77‑1 (MQ=255) tggccaAGGCTGCCAGCAGCAACAGGCTAGCCAGTACATAGGCCCAGCTGGCCATGTGTTTACGCAGTGGCGCCAGCAACAGt > 1:230869‑M2/7‑83 (MQ=255) | GTGCCTTGCGAGCAGGCGCCAGCGGCGTTGGTCAGGTAGCAGGTGGTCACTGGCCAGGCATTGCAGGCACAACAATGCGGGATAGTGGCCCAGGGCAATGGCCAGTGGTAGCAGCCAGGCCCGCAGGGCCAACTGCAGGCAACTGGCCAAGGCTGCCAGCAGCAACAGGCTAGCCAGTACATAGGCCCAGCTGGCCATGTGTTTACGCAGTGGCGCCAGCAACAGTTGGTGCAGGCACCCCATCAGTACTGCGCACAGGCCGATGGCCGCGCCTTCAGCCAGCGTTCGGGT > NC_002947/1250911‑1251201 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |