New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1394321 =	21 (0.910)	3 (0.140)	3/236	NT	15.5%	coding (52/1047 nt)	ruvB	Holliday junction ATP‑dependent DNA helicase RuvB
	?	NC_002947	1394357 =	13 (0.600)					coding (88/1047 nt)	ruvB	Holliday junction ATP‑dependent DNA helicase RuvB

ACAAGGCCGGCCTGAGCAGTGAAGAGCTGATCCGCCGCAGCCTGAAAGGGATGATTTCCAAGTGATCGAAGCCGACCGCCTGATCGCCGCCAGTGGCCGCGACCGCGAAGAAGTCCAGGACCGTGCGATTCGCCCGCTGAGCCTGGACGAGTACATCGGCCAGCCGGTGGTGCGCGAGCAGATGGCGCTGTTCATCCAGGCCGCCCGCGGCCGCGGCGAGTCGCTTGACCACACGCTGATCTTCGGCCCGCCCGGCCTGGGCAAGACCACCCTGGCCAACATCATCGCCCATGAAA  >  NC_002947/1394209‑1394504                                                                                                                                                     |                                                                                                                                                    ccaggccgggcgggccgaagatcagcgtgtggtcaagcgactcgccgcggccgcgggcggcctggatgaacagcgccatctgctcgcgcaccaccggctggccgatgtactcGTCCAGGACCGTGCGATTCGCCCGCTGAGCCTGGACGa                                                                                                                                                    >  2:15203‑M1/113‑150 (MQ=255) aCAAGGCCGGCCTGAGCAGTGAAGAGCTGATCCGCCGCAGCCTGAAAGGGATGATTTCCAAGTGATCGAAGCCGACCGCCTGATCGCCGCCAGTGGCCGCGACCGCGAAGAAGTCCAGGACCGTGCGATTCGCCCGCTGAGCCTGGACGa                                                                                                                                                    >  1:124432/1‑150 (MQ=255)    aGGCCGGCCTGAGCAGTGAAGAGCTGATCCGCCGCAGCCTGAAAGGGATGATTTCCAAGTGATCGAAGCCGACCGCCTGATCGCCGCCAGTGGCCGCGACCGCGAAGAAGTCCAGGACCGTGCGATTCGCCCGCTGAGCCTGGACGAGTa                                                                                                                                                 >  2:47087/1‑150 (MQ=255)          gccTGAGCAGTGAAGAGCTGATCCGCCGCAGCCTGAAAGGGATGATTTCCAAGTGATCGAAGCCGACCGCCTGATCGCCGCCAGTGGCCGCGACCGCGAAGAAGTCCAGGACCGTGCGATTCGCCCGCTGAGCCTGGACGAGTACATCgg                                                                                                                                           >  1:7346/1‑150 (MQ=255)                        gagCTGATCCGCCGCAGCCTGAAAGGGATGATTTCCAAGTGATCGAAGCCGACCGCCTGATCGCCGCCAGTGGCCGCGACCGCGAAGAAGTCCAGGACCGTGCGATTCGCCCGCTGAGCCTGGACGAGTACATCGGCCAGCCGGTGGTgc                                                                                                                             <  2:74336/150‑1 (MQ=255)                              aTCCGCCGCAGCCTGAAAGGGATGATTTCCAAGTGATCGAAGCCGACCGCCTGATCGCCGCCAGTGGCCGCGACCGCGAAGAAGTCCAGGACCGTGCGATTCGCCCGCTGAGCCTGGACGAGTACATCGGCCAGCCGGTGGTGCGCGAGc                                                                                                                       >  2:408672/1‑150 (MQ=255)                                        gCCTGAAAGGGATGATTTCCAAGTGATCGAAGCCGACCGCCTGATCGCCGCCAGTGGCCGCGACCGCGAAGAAGTCCAGGACCGTGCGATTCGCCCGCTGAGCCTGGACGAGTACATCGGCCAGCCGGTGGTGCGCGAGCAGATGGCGCt                                                                                                             <  1:408672/150‑1 (MQ=255)                                                    ggatTTCCAAGTGATCGAAGCCGACCGCCTGATCGCCGCCAGTGGCCGCGACCGCGAAGAAGTCCAGGACCGTGCGATTCGCCCGCTGAGCCTGGACGAGTACATCGGCCAGCCGGTGGTGCGCGAGCAGATGGCGCTGTTCATCCAGgc                                                                                                 >  2:105255/2‑150 (MQ=255)                                                         tCCAAGTGATCGAAGCCGACCGCCTGATCGCCGCCAGTGGCCGCGACCGCGAAGAAGTCCAGGACCGTGCGATTCGCCCGCTGAGCCTGGACGAGTACATCGGCCAGCCGGTGGTGCGCGAGCAGATGGCGCTGTTCATCCAGGccgccc                                                                                            <  1:42416/150‑1 (MQ=255)                                                                             cGCCTGATCGCCGCCAGTGGCCGCGACCGCGAAGAAGTCCAGGACCGTGCGATTCGCCCGCTGAGCCTGGACGAGTACATCGGCCAGCCGGTGGTGCGCGAGCAGATGGCGCTGTTCATCCAGGCCGCCCGCGGCCGCGGCGAGTCGCtt                                                                        <  2:19713/150‑1 (MQ=255)                                                                              gCCTGATCGCCGCCAGTGGCCGCGACCGCGAAGAAGTCCAGGACCGTGCGATTCGCCCGCTGAGCCTGGACGAGTACATCGGCCAGCCGGTGGTGCGCGAGCAGATGGCGCTGTTCATCCAGGCCGCCCGCGGCCGCGGCGa                                                                               <  2:176839/142‑1 (MQ=255)                                                                              gCCTGATCGCCGCCAGTGGCCGCGACCGCGAAGAAGTCCAGGACCGTGCGATTCGCCCGCTGAGCCTGGACGAGTACATCGGCCAGCCGGTGGTGCGCGAGCAGATGGCGCTGTTCATCCAGGCCGCCCGCGGCCGCGGCGa                                                                               >  1:176839/1‑142 (MQ=255)                                                                                cTGATCGCCGCCAGTGGCCGCGACCGCGAAGAAGTCCAGGACCGTGCGATTCGCCCGCTGAGCCTGGACGAGTACATCGGCCAGCCGGTGGTGCGCGAGCAGATGGCGCTGTTCATCCAGGCCGCCCGCGGCCGCGGCGAGTCGCTTGAc                                                                     <  2:124432/150‑1 (MQ=255)                                                                                         gccAGTGGCCGCGACCGCGAAGAAGTCCAGGACCGTGCGATTCGCCCGCTGAGCCTGGACGAGTACATCGGCCAGCCGGTGGTGCGCGAGCAGATGGCGCTGTTCATCCAGGCCGCCCGCGGCCGCGGCGAGTCGCTTGACCACACGCTg                                                            >  1:242506/1‑150 (MQ=255)                                                                                                         gcgaAGAAGTCCAGGACCGTGCGATTCGCCCGCTGAGCCTGGACGAGTACATCGGCCAGCCGGTGGTGCGCGAGCAGATGGCGCTGTTCATCCAGGCCGCCCGCGGCCGCGGCGAGTCGCTTGACCACACGCTGATCTTCGGcccgcccg                                            >  1:583698/1‑150 (MQ=255)                                                                                                               tcgtccaggctcagcgggcgaatcgcacggtcctggacGAGTACATCGGCCAGCCGGTGGTGCGCGAGCAGATGGCGCTGTTCATCCAGGCCGCCCGCGGCCGCGGCGAGTCGCTTGACCACACGCTGATCTTCGGCCCGCCCGGCCTgg                                      >  2:15203‑M2/39‑150 (MQ=255)                                                                                                                  tccaggctcagcgggcgaatcgcacggtcctggacGAGTACATCGGCCAGCCGGTGGTGCGCGa                                                                                                                         >  1:569683‑M2/36‑64 (MQ=255)                                                                                                                  tccaggctcagcgggcgaatcgcacggtcctggacGAGTACATCGGCCAGCCGGTGGTGCGCGa                                                                                                                         <  2:569683‑M2/29‑1 (MQ=255)                                                                                                                  tcaaGGACCGTGCGATTCGCCCGCTGAGCCTGGACGAGTACATCGGCCAGCCGGTGGTGCGCGAGCAGATGGCGCTGTTCATCCAGGCCGCCCGCGGCCGCGGCGAGTCGCTTGACCACACGCTGATCTTCGGCCCGCCCGGCCTGGGCa                                   >  1:614970/4‑150 (MQ=255)                                                                                                                   CCAGGACCGTGCGATTCGCCCGCTGAGCCTGGACGAGTACATCGGCCAGCCGGTGGTGCGCGAGCAGATGGCGCTGTTCATCCAGGCCGCCCGCGGCCGCGGCGAGTCGCTTGACCACACGCTGATCTTCGGCCCGCCCGGCCTGGGCaa                                  <  2:480975‑M1/150‑1 (MQ=255)                                                                                                                                                   acGAGTACATCGGCCAGCCGGTGGTGCGCGAGCAGATGGCGCTGTTCATCCAGGCCGCCCGCGGCCGCGGCGAGTCGCTTGACCACACGCTGATCTTCGGCCCGCCCGGCCTGGGCAAGACCACCCTGGCCAACATCATCGCCCATGaaa  <  1:47087‑M2/148‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    ACAAGGCCGGCCTGAGCAGTGAAGAGCTGATCCGCCGCAGCCTGAAAGGGATGATTTCCAAGTGATCGAAGCCGACCGCCTGATCGCCGCCAGTGGCCGCGACCGCGAAGAAGTCCAGGACCGTGCGATTCGCCCGCTGAGCCTGGACGAGTACATCGGCCAGCCGGTGGTGCGCGAGCAGATGGCGCTGTTCATCCAGGCCGCCCGCGGCCGCGGCGAGTCGCTTGACCACACGCTGATCTTCGGCCCGCCCGGCCTGGGCAAGACCACCCTGGCCAACATCATCGCCCATGAAA  >  NC_002947/1394209‑1394504

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.