| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5447841 = | 38 (1.630) | 3 (0.140) | 3/230 | NT | 7.9% | intergenic (+14/‑231) | hemL/PP_4785 | glutamate‑1‑semialdehyde 2,1‑aminomutase/hypothetical protein |
| ? | NC_002947 | 5447926 = | 36 (1.710) | intergenic (+99/‑146) | hemL/PP_4785 | glutamate‑1‑semialdehyde 2,1‑aminomutase/hypothetical protein | |||||
TGCGTATTTATTGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAAGGGGGTGTCGCTTTCTTGAGTGTAGGAGTGGGTTGGCTCACGAAGAGGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5447944‑5447841‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaagaggccggCACAGGCAATAAATACGCACACACAATCAGCTGACTTCCCCAACCAAGCAGAAATTCGAGTAAAACTTT > NC_002947/5447926‑5447994 TGCGTATTTATTGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCATACAAGGGGGTGTCGCTTTCTTGAGTGTAGGAGTGGGTTGGCTCACGAAGAGGCCG > 1:37230/1‑103TGCGTATTTATTGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCATACAAGGGGGTGTCGCTTTCTTGAGTGTAGGAGTGGGTTGGCTCACGAAGAGGCCG < 2:37230/103‑1 TGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAAGGGGGTGTCGCTTTCTTGAGTGTAGGAGTGGGTTGGCTCACGAAGAGGCCGGCACAGGCAATAAATACGCACACACAATCAGCTGACTTCCCCAACCAA > 1:365342/1‑136 TGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAAGGGGGTGTCGCTTTCTTGAGTGTAGGAGTGGGTTGGCTCACGAAGAGGCCGGCACAGGCAATAAATACGCACACACAATCAGCTGACTTCCCCAACCAA < 2:365342/136‑1 CCTCTTCGCGGGTGAACCCGCTCCTACAAGGGGGTGTCGCTTTCTTGAGTGTAGGAGTGGGTTGGCTCACGAAGAGGCCGGCACAGGCAATAAATACTCACACACAATCAGCTGACTTCCCCAACCAAGCAGAAATTCGAGTAAAACTTT > 1:234262/1‑150 TTCGCGGGTGAACCCGCTCCTACAAGGGGGTGTCGCTTTCTTGAGTGTAGGAGTGGGTTGGCTCACGAAGAGGCCG > 1:118935/1‑76 TTCGCGGGTGAACCCGCTCCTACAAGGGGGTGTCGCTTTCTTGAGTGTAGGAGTGGGTTGGCTCACGAAGAGGCCG < 2:118935/76‑1 TGCGTATTTATTGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAAGGGGGTGTCGCTTTCTTGAGTGTAGGAGTGGGTTGGCTCACGAAGAGGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5447944‑5447841‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaagaggccggCACAGGCAATAAATACGCACACACAATCAGCTGACTTCCCCAACCAAGCAGAAATTCGAGTAAAACTTT > NC_002947/5447926‑5447994 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |